mRNA_F-serratus_M_contig6756.17776.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6756.17776.1
Unique NamemRNA_F-serratus_M_contig6756.17776.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 200 bits (509), Expect = 9.550e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.110e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    7 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: UPI001F077499 (histone H4-like n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F077499)

HSP 1 Score: 198 bits (503), Expect = 1.460e-63
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   40 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 144
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 196 bits (499), Expect = 1.580e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    7 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: G3UKU6_LOXAF (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXAF)

HSP 1 Score: 196 bits (499), Expect = 1.630e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    4 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: A0A0B6YRU8_9EUPU (Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 196 bits (499), Expect = 1.740e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    4 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: A0A2S2QRE4_9HEMI (Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 RepID=A0A2S2QRE4_9HEMI)

HSP 1 Score: 197 bits (500), Expect = 1.740e-63
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            SNM+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 SNMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 196 bits (499), Expect = 1.970e-63
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    4 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    7 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 196 bits (498), Expect = 2.800e-63
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            S+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 SSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
[Close]
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Match: UPI001ED88992 (histone H4-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88992)

HSP 1 Score: 197 bits (500), Expect = 2.820e-63
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 315
            SNM+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   28 SNMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6756.17776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V663_9STRA9.550e-65100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A024G0M5_9STRA1.110e-63100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
UPI001F0774991.460e-6398.10histone H4-like n=1 Tax=Hypomesus transpacificus T... [more]
H4_SOLLC1.580e-6399.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
G3UKU6_LOXAF1.630e-6398.08Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3U... [more]
A0A0B6YRU8_9EUPU1.740e-6398.08Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=3321... [more]
A0A2S2QRE4_9HEMI1.740e-6397.14Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 ... [more]
W5QFN7_SHEEP1.970e-6398.08Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q... [more]
UPI000528D6F72.800e-6397.14histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta... [more]
UPI001ED889922.820e-6397.14histone H4-like n=2 Tax=Ischnura elegans TaxID=197... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6756contigF-serratus_M_contig6756:22192..22509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size318
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932065.9273305-UTR-F-serratus_M_contig6756:22191..221971622932065.9273305-UTR-F-serratus_M_contig6756:22191..22197Fucus serratus maleUTRF-serratus_M_contig6756 22192..22197 +
1690964129.1369412-UTR-F-serratus_M_contig6756:22191..221971690964129.1369412-UTR-F-serratus_M_contig6756:22191..22197Fucus serratus maleUTRF-serratus_M_contig6756 22192..22197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932065.956994-CDS-F-serratus_M_contig6756:22197..225091622932065.956994-CDS-F-serratus_M_contig6756:22197..22509Fucus serratus maleCDSF-serratus_M_contig6756 22198..22509 +
1690964129.1489563-CDS-F-serratus_M_contig6756:22197..225091690964129.1489563-CDS-F-serratus_M_contig6756:22197..22509Fucus serratus maleCDSF-serratus_M_contig6756 22198..22509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6756.17776.1prot_F-serratus_M_contig6756.17776.1Fucus serratus malepolypeptideF-serratus_M_contig6756 22198..22509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6756.17776.1

>prot_F-serratus_M_contig6756.17776.1 ID=prot_F-serratus_M_contig6756.17776.1|Name=mRNA_F-serratus_M_contig6756.17776.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
back to top

mRNA from alignment at F-serratus_M_contig6756:22192..22509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6756.17776.1 ID=mRNA_F-serratus_M_contig6756.17776.1|Name=mRNA_F-serratus_M_contig6756.17776.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig6756:22192..22509+ (Fucus serratus male)
TCAAACATGTCCGGACGCGGAAAGGGAGGGAAGGGTCTGGGCAAGGGTGG
TGCAAAGCGCCACCGAAAGGTTCTACGCGACAACATCCAGGGTATCACCA
AGCCCGCGATCCGCCGGCTGGCCCGTCGTGGCGGTGTAAAGCGTATCTCT
GGCCTTATCTACGAGGAAACGCGCGGTGTGCTCAAGGTATTCTTGGAGAA
CGTCATACGCGACTCGGTGACCTACACAGAGCACGCTCGCCGTAAGACTG
TGACGGCAATGGATGTGGTGTACGCTCTTAAGCGCCAGGGCCGCACCCTC
TACGGTTTTGGCGGCTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6756:22192..22509+

>mRNA_F-serratus_M_contig6756.17776.1 ID=mRNA_F-serratus_M_contig6756.17776.1|Name=mRNA_F-serratus_M_contig6756.17776.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig6756:22192..22509+ (Fucus serratus male)
ATGTCCGGACGCGGAAAGGGAGGGAAGGGTCTGGGCAAGGGTGGTGCAAA
GCGCCACCGAAAGGTTCTACGCGACAACATCCAGGGTATCACCAAGCCCG
CGATCCGCCGGCTGGCCCGTCGTGGCGGTGTAAAGCGTATCTCTGGCCTT
ATCTACGAGGAAACGCGCGGTGTGCTCAAGGTATTCTTGGAGAACGTCAT
ACGCGACTCGGTGACCTACACAGAGCACGCTCGCCGTAAGACTGTGACGG
CAATGGATGTGGTGTACGCTCTTAAGCGCCAGGGCCGCACCCTCTACGGT
TTTGGCGGCTAAATGTCCGGACGCGGAAAGGGAGGGAAGGGTCTGGGCAA
GGGTGGTGCAAAGCGCCACCGAAAGGTTCTACGCGACAACATCCAGGGTA
TCACCAAGCCCGCGATCCGCCGGCTGGCCCGTCGTGGCGGTGTAAAGCGT
ATCTCTGGCCTTATCTACGAGGAAACGCGCGGTGTGCTCAAGGTATTCTT
GGAGAACGTCATACGCGACTCGGTGACCTACACAGAGCACGCTCGCCGTA
AGACTGTGACGGCAATGGATGTGGTGTACGCTCTTAAGCGCCAGGGCCGC
ACCCTCTACGGTTTTGGCGGCTAA
back to top