mRNA_F-serratus_M_contig6745.17768.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6745.17768.1
Unique NamemRNA_F-serratus_M_contig6745.17768.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.640e-59
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDM-VSPDG 349
            LHLVDLAGSERL+RSNATGDRLKETVAINKSLSSLTDVF++ISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPT++SYHESLCSLRFA+QVNQCELGRPKR +RDM  S DG
Sbjct: 1170 LHLVDLAGSERLSRSNATGDRLKETVAINKSLSSLTDVFVSISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTDQSYHESLCSLRFASQVNQCELGRPKRQLRDMSTSSDG 1286          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A835YR54_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR54_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.000e-55
Identity = 98/127 (77.17%), Postives = 113/127 (88.98%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDMVSP--DGASTPSKGST 376
            LHLVDLAGSERL+RS ATG RLKET AINKSLS+LTDVF A++NK++H+PFRNSKLTYLLQPALSG+GKTLMMVNLSPT++SY ESLCSLRFA+QVNQCELGR KR++RD  +   DGAST S  S+
Sbjct:  392 LHLVDLAGSERLDRSGATGQRLKETQAINKSLSALTDVFTALANKTAHVPFRNSKLTYLLQPALSGEGKTLMMVNLSPTDDSYSESLCSLRFASQVNQCELGRAKRNIRDASATIDDGASTCSSSSS 518          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A7S1U336_9STRA (Kinesin-like protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U336_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.820e-51
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDMVSPDGAST 358
            L+LVDLAGSERL+RS ATGDRLKE   IN+SLS LTDVF A+ NK+ H+PFRNSKLT LLQPALSGDGKTLM+VNLSPT+ESY ESLCSLRFA+ VNQCELGRPKR ++  VS D  ST
Sbjct:  149 LNLVDLAGSERLSRSCATGDRLKEAQNINRSLSCLTDVFTALRNKAGHVPFRNSKLTQLLQPALSGDGKTLMIVNLSPTQESYQESLCSLRFASNVNQCELGRPKRQMKS-VSTDRDST 266          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A7S3HL69_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HL69_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.170e-51
Identity = 97/140 (69.29%), Postives = 110/140 (78.57%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDM------------VSPDGASTPSKGSTSSR 385
            L LVDLAGSERL+RS ATG++LKETVAINKSLS+L DVF+AI NK SHIPFRNSKLTYLLQ ALSGDGKTLMMVNLSPT ES+ ESLCSLR A Q+NQCELG+PK+ V+++            V PD  S P+  ST SR
Sbjct:  314 LSLVDLAGSERLDRSGATGEQLKETVAINKSLSALADVFVAIGNKQSHIPFRNSKLTYLLQSALSGDGKTLMMVNLSPTLESFQESLCSLRLAKQINQCELGKPKKQVKEVTNVKESTSSKMQVCPDTPSGPTVXSTPSR 453          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: K3WUH1_GLOUD (Kinesin-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUH1_GLOUD)

HSP 1 Score: 175 bits (443), Expect = 3.910e-51
Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDMVSP 343
            L+LVDLAGSER +RSN +GDRLKET AINKSLS L DVF AI NKSSHIPFRNSKLTYLLQ +LSGDGKTLMMVNLSPT ES  ESLCSLRFA QVNQCELG+PKR ++    P
Sbjct:  250 LNLVDLAGSERASRSNVSGDRLKETQAINKSLSCLADVFTAIGNKSSHIPFRNSKLTYLLQTSLSGDGKTLMMVNLSPTLESASESLCSLRFAKQVNQCELGKPKRQIKSKKDP 363          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A7S2MNW6_9STRA (Kinesin-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MNW6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.640e-50
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDM 334
            L+LVDLAGSERL RS ATGDR KE V+INKSLS+LTDVF AI  K  H+P+RNSKLTYLLQP LSGDGKTLM+VNLSPTEES  ESLCSLRFA+QVNQCELG+ KR + ++
Sbjct:  108 LNLVDLAGSERLERSGATGDRAKEAVSINKSLSALTDVFAAIGRKGGHVPYRNSKLTYLLQPCLSGDGKTLMLVNLSPTEESTQESLCSLRFASQVNQCELGKAKRTIEEL 218          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A7S2GW29_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW29_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.740e-50
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRD 331
            L+LVDLAGSERL+RSNATG+RL+E  +INKSLS L+DVF AIS K+SHIPFRNSKLT++L PALSGDGKTLMMVNLSPT+ SYHESLCSLRFA+ VN+CELGRPKR VR+
Sbjct:  440 LNLVDLAGSERLSRSNATGERLREAQSINKSLSCLSDVFNAISKKASHIPFRNSKLTHILSPALSGDGKTLMMVNLSPTDASYHESLCSLRFASTVNKCELGRPKRQVRE 549          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A3F2RRB6_9STRA (Kinesin-like protein (Fragment) n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRB6_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.390e-49
Identity = 87/111 (78.38%), Postives = 96/111 (86.49%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDM 334
            L+LVDLAGSER +RSN +G+RLKET AINKSLS L DVF AI NK+SHIPFRNSKLTYLLQ +LSGDGKTLMMVNLSPT ES  ESLCSLRFA QVNQCELG+PKR ++  
Sbjct:  240 LNLVDLAGSERASRSNVSGERLKETQAINKSLSCLADVFNAIGNKASHIPFRNSKLTYLLQSSLSGDGKTLMMVNLSPTLESASESLCSLRFAKQVNQCELGKPKRQIKSQ 350          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A067BSS9_SAPPC (Kinesin motor domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BSS9_SAPPC)

HSP 1 Score: 166 bits (420), Expect = 1.600e-49
Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHV 325
            L LVDLAGSERL+RS ATGDRLKE  AINKSLSSL DVF AI+ K +HIP+RNSKLTY+LQPALSGDGKTLMMVNLSPT+ S  ESLCSLRFA QVNQCELG   R V
Sbjct:   48 LSLVDLAGSERLSRSGATGDRLKEAQAINKSLSSLADVFSAIAKKQNHIPYRNSKLTYVLQPALSGDGKTLMMVNLSPTDASIDESLCSLRFATQVNQCELGAAGRQV 155          
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Match: A0A7S0BX78_9STRA (Kinesin-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX78_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.520e-49
Identity = 94/128 (73.44%), Postives = 107/128 (83.59%), Query Frame = 2
Query:    2 LHLVDLAGSERLNRSNATGDRLKETVAINKSLSSLTDVFMAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCSLRFAAQVNQCELGRPKRHVRDMVSPDGAS--TPSKGSTS 379
            L+LVDLAGSERL RS  TG  +KE +AINKSLSSLTDVF++I  KSSH+PFRNSKLTYLLQP+LSGDGKTLM+VNLSPTEES  ES+CSLRFAAQVN+CELG+ KR + DM     AS  TPSK S+S
Sbjct:  516 LNLVDLAGSERLKRSGVTGSMMKEAMAINKSLSSLTDVFVSIGKKSSHVPFRNSKLTYLLQPSLSGDGKTLMVVNLSPTEESTQESICSLRFAAQVNKCELGQAKRSLEDMPGTGSASSTTPSKRSSS 643          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6745.17768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJH6_9PHAE1.640e-5990.60Kinesin motor domain-containing protein (Fragment)... [more]
A0A835YR54_9STRA5.000e-5577.17P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1U336_9STRA2.820e-5176.47Kinesin-like protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HL69_9STRA3.170e-5169.29Kinesin-like protein (Fragment) n=1 Tax=Spumella e... [more]
K3WUH1_GLOUD3.910e-5178.95Kinesin-like protein n=1 Tax=Globisporangium ultim... [more]
A0A7S2MNW6_9STRA2.640e-5076.58Kinesin-like protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2GW29_9STRA2.740e-5080.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3F2RRB6_9STRA1.390e-4978.38Kinesin-like protein (Fragment) n=3 Tax=Phytophtho... [more]
A0A067BSS9_SAPPC1.600e-4979.63Kinesin motor domain-containing protein n=1 Tax=Sa... [more]
A0A7S0BX78_9STRA3.520e-4973.44Kinesin-like protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6745contigF-serratus_M_contig6745:15651..17205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.1e-25
Seed eggNOG ortholog65071.PYU1_T008618
KEGG koko:K10405
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons3
Model size416
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6745.17768.1prot_F-serratus_M_contig6745.17768.1Fucus serratus malepolypeptideF-serratus_M_contig6745 15769..17195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932064.0876696-UTR-F-serratus_M_contig6745:15650..157681622932064.0876696-UTR-F-serratus_M_contig6745:15650..15768Fucus serratus maleUTRF-serratus_M_contig6745 15651..15768 +
1690964128.2358758-UTR-F-serratus_M_contig6745:15650..157681690964128.2358758-UTR-F-serratus_M_contig6745:15650..15768Fucus serratus maleUTRF-serratus_M_contig6745 15651..15768 +
1622932064.1544108-UTR-F-serratus_M_contig6745:17195..172051622932064.1544108-UTR-F-serratus_M_contig6745:17195..17205Fucus serratus maleUTRF-serratus_M_contig6745 17196..17205 +
1690964128.2811177-UTR-F-serratus_M_contig6745:17195..172051690964128.2811177-UTR-F-serratus_M_contig6745:17195..17205Fucus serratus maleUTRF-serratus_M_contig6745 17196..17205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932064.1054308-CDS-F-serratus_M_contig6745:15768..157951622932064.1054308-CDS-F-serratus_M_contig6745:15768..15795Fucus serratus maleCDSF-serratus_M_contig6745 15769..15795 +
1690964128.2481384-CDS-F-serratus_M_contig6745:15768..157951690964128.2481384-CDS-F-serratus_M_contig6745:15768..15795Fucus serratus maleCDSF-serratus_M_contig6745 15769..15795 +
1622932064.1188798-CDS-F-serratus_M_contig6745:16246..163871622932064.1188798-CDS-F-serratus_M_contig6745:16246..16387Fucus serratus maleCDSF-serratus_M_contig6745 16247..16387 +
1690964128.263943-CDS-F-serratus_M_contig6745:16246..163871690964128.263943-CDS-F-serratus_M_contig6745:16246..16387Fucus serratus maleCDSF-serratus_M_contig6745 16247..16387 +
1622932064.1350887-CDS-F-serratus_M_contig6745:17075..171951622932064.1350887-CDS-F-serratus_M_contig6745:17075..17195Fucus serratus maleCDSF-serratus_M_contig6745 17076..17195 +
1690964128.2726126-CDS-F-serratus_M_contig6745:17075..171951690964128.2726126-CDS-F-serratus_M_contig6745:17075..17195Fucus serratus maleCDSF-serratus_M_contig6745 17076..17195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6745.17768.1

>prot_F-serratus_M_contig6745.17768.1 ID=prot_F-serratus_M_contig6745.17768.1|Name=mRNA_F-serratus_M_contig6745.17768.1|organism=Fucus serratus male|type=polypeptide|length=96bp
MAISNKSSHIPFRNSKLTYLLQPALSGDGKTLMMVNLSPTEESYHESLCS
LRFAAQVNQCELGRPKRHVRDMVSPDGASTPSKGSTSSRKGSGRT*
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mRNA from alignment at F-serratus_M_contig6745:15651..17205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6745.17768.1 ID=mRNA_F-serratus_M_contig6745.17768.1|Name=mRNA_F-serratus_M_contig6745.17768.1|organism=Fucus serratus male|type=mRNA|length=1555bp|location=Sequence derived from alignment at F-serratus_M_contig6745:15651..17205+ (Fucus serratus male)
CCTTCATCTCGTGGATCTTGCGGGAAGTGAGCGCCTGAATCGCTCCAACG CTACGGGTGACCGCCTCAAGGAGACCGTAGCCATTAACAAGTCGCTCAGC TCGCTCACGGACGTGTTCATGGCCATCTCCAATAAAAGCTCCCACGTGAG AGAGTATAAGTATTGCGCACCAGACCTTCTTTACATGCTGCTGCACAGGC TCATAATACTCGTTTTTTTCCTTGCAAAGCTGTACCTGGATACAGTGCCA TACTATTTATAAGTGATAATAACAAAAATGAGGAAAAAGCGCTTGTTGTG TTGATCCTTAGGCAAGACCAAGCCTGTAGATCGAAGTTGAGGTGCAACCA AGCCTCAAGAAATAAGTTACACCATGTTTGTTTTTGTTGTTTTGTTGCCT TCACTCATTGATACGGCCTGTCTCACACCTCTAGCCCAGCCCCTGTTTTA CCCCCGTTTCACTCCGCAGAGAGAGGTTGAAACATCCATATGTTTAATAT TATAGACTATTGTTAGTAGTAGGCTGTCCATCCTGTCAACTTTTTTCTCT CCGTCGTCGCCCCCCACGCCTCCTGCCTTGTGAAAACCCTGATCAGATTC CTTTCCGAAACTCTAAGCTTACGTACCTGCTTCAGCCCGCCCTCTCCGGA GATGGCAAGACGCTCATGATGGTCAACCTCAGCCCCACAGAAGAATCGTA CCACGAGTCGCTGTGCTCTCTGCGATTCGCAGCTCAGGCACGGTGCACCT TTTGATTCTACGGTTTATTTAGAGCACTTTCGATCGACGGTGTTAGCGCG TTGAGCTGTTCAAATTAATAATGCTATATGGTATAAATTATAATGTAAGA TGCTGATTTAGGGCATTAAAAGGGGAAGCCTTCATTCCCCCCCCCCCCAT CTCCCACTCCTCGTGAATATATTGAATTAATTACTGAATTTATGTCTTGA ACTACAACATACGTTCAAATTACGACCGAAAACTTTTTGTAAGGCTATGA GGCGGCAATGCTACAAATAACTTACTGGGGGGGAGTTTTCCTTTTATACG ACTACCGTTACGTTTGGTAGAGAACGCGCCCCCGGGGGAACCCCCTCACC TCCCCCACCCACTGTTCTCTTGAGTGCAGACTGCACCGACGTTCAAAATA TTTTTGGGGGATACTGATAGTGATAGTCCTTATGCGCGAGATCTTTCCAT CGCCGCGTTGTTTGATGGAATCTAGCTCGTCAATCAAAAAGAGAAAATGG AGGAGGGGAGAGTATTTTTTACCCCTCGGGGGGGGGGGGGGGGGGGCGTT CTCTCCGAACATCACGGTAAACTACAGGCGAGGTCACCCACCCTTCTTAC CCCTCTCTCAAAAACTACTCTCGAGCTGATTGAGCGCTGCACCGATTCAA CTCCCCTGTTTGTTACGGGCGCCAGGTTAATCAGTGCGAGCTGGGAAGAC CCAAAAGACATGTCCGGGACATGGTATCTCCGGACGGCGCTTCGACGCCG TCTAAGGGCAGCACAAGCTCCCGGAAAGGCTCCGGCCGAACATGAGGCGA CGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6745:15651..17205+

>mRNA_F-serratus_M_contig6745.17768.1 ID=mRNA_F-serratus_M_contig6745.17768.1|Name=mRNA_F-serratus_M_contig6745.17768.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig6745:15651..17205+ (Fucus serratus male)
ATGGCCATCTCCAATAAAAGCTCCCACATGGCCATCTCCAATAAAAGCTC
CCACATTCCTTTCCGAAACTCTAAGCTTACGTACCTGCTTCAGCCCGCCC
TCTCCGGAGATGGCAAGACGCTCATGATGGTCAACCTCAGCCCCACAGAA
GAATCGTACCACGAGTCGCTGTGCTCTCTGCGATTCGCAGCTCAGATTCC
TTTCCGAAACTCTAAGCTTACGTACCTGCTTCAGCCCGCCCTCTCCGGAG
ATGGCAAGACGCTCATGATGGTCAACCTCAGCCCCACAGAAGAATCGTAC
CACGAGTCGCTGTGCTCTCTGCGATTCGCAGCTCAGGTTAATCAGTGCGA
GCTGGGAAGACCCAAAAGACATGTCCGGGACATGGTATCTCCGGACGGCG
CTTCGACGCCGTCTAAGGGCAGCACAAGCTCCCGGAAAGGCTCCGGCCGA
ACATGAGTTAATCAGTGCGAGCTGGGAAGACCCAAAAGACATGTCCGGGA
CATGGTATCTCCGGACGGCGCTTCGACGCCGTCTAAGGGCAGCACAAGCT
CCCGGAAAGGCTCCGGCCGAACATGA
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