prot_F-serratus_M_contig1235.1775.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1235.1775.1
Unique Name	prot_F-serratus_M_contig1235.1775.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	446

Homology

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BLAST of mRNA_F-serratus_M_contig1235.1775.1 vs. uniprot
Match: A0A6H5L2P0_9PHAE (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.710e-52
Identity = 134/317 (42.27%), Postives = 182/317 (57.41%), Query Frame = 0

Query:   92 RADAIDFSSDDEEE----RKFVPKRRREMDEAA-MQAIVNATIEDNLRSDDEDGESLPRTAAADREFQRMKDEIARAERFDLPT----RSCAPGGARGGPSRAAAEAAEALKQAAAARSKRELDSRRVKLTMVRSKNRRHVFHTKLGSRVGAIEEACREQVALVSRDEQ-GAEICLYHEESLLNPTRTLAEVGLKSDAT-IRLDVKGGEVPD---VQGDPLTLTVKVEGGKPFKAEITTEMKFKTFTEGFIAAVGIPLERASECVFKVDGDRLDPEGTPQAEDLEDGDQIDATFPADVMTGVQASPETVNLLAPLKK 394
            R  AID  SD ++E     +  PKRR++   A  + A V A ++  L S D  G S  R A ++ +  RMK ++A A   D+ +    R   PG A G P          +    AAR +RE + + VKL + RSK ++H+FHTKLG+ V  +E+ CRE   LVSR+E+  AE+ L+ ++  L   +TL E G+      +RLDVKGG         G P+TL ++VEGGK F    TT  KF  F E F   VGIP ERASE VFK DGD+L+P+GTP+ ED+E  + IDA FPAD+M  VQA+P  ++L AP KK
Sbjct:  112 RKQAIDLLSDSDDEFGAPPRPAPKRRKKAPTAEELDAQVRAKVDALLESSDGGGCSSSRAATSEEDQARMKQKLADATNIDMASTVIGRQRPPGVATGSP---------VVSAETAARREREQNQKGVKLMVKRSKQQQHLFHTKLGTLVSVVEDKCREDPDLVSREEEEDAEVALFWKDKQLESGKTLRESGIPPGRVDLRLDVKGGSGGGGDCASGAPITLKLRVEGGKAFMVTTTTGTKFSAFMEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPKKK 419

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BLAST of mRNA_F-serratus_M_contig1235.1775.1 vs. uniprot
Match: D7G8L3_ECTSI (Rad60-SLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.170e-41
Identity = 112/257 (43.58%), Postives = 143/257 (55.64%), Query Frame = 0

Query:  156 MKDEIARAERFDL-PT---RSCAPGGARGGPSRAAAEAAEALKQAAAARSKRELDSRRVKLTMVRSKNRRHVFHTKLGSRVGAIEEACREQVALVSRDEQGA-------EICLYHE---ESLLNPTRTLAEVGLKSDAT-IRLDVKGGEVPD---VQGDPLTLTVKVEGGKPFKAEITTEMKFKTFTEGFIAAVGIPLERASECVFKVDGDRLDPEGTPQAEDLEDGDQIDATFPADVMTGVQASPETVNLLAPLKK 394
            MK ++A A   D+ PT   R  A G A G P          +    AAR +RE + + VKL + RSK ++H+FHTKLG+ V  +EE CRE   L      G        E  ++ +   E  L   +TL E G+      +RLDVKGG         G P+TL ++VEGGK F    TT  KF  F E F   VGIP ERASECVFK DGD+L+P+GTP+ ED+E  + IDA FPADVM  VQA+P  ++L AP KK
Sbjct:    1 MKQKLADATNIDMAPTVMGRLRASGVATGSP---------VVSAETAARREREQNQKGVKLMVTRSKQQQHLFHTKLGTLVSVVEEKCREDPDLGLPGGGGGCGGRSFLEDDIFDQSLAEKQLESGKTLRESGIPPGRVDLRLDVKGGSGGGGDCASGAPITLKLRVEGGKAFMVTTTTGTKFSAFMEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKK 248

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1235.1775.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1235.1775.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L2P0_9PHAE	2.710e-52	42.27	Rad60-SLD domain-containing protein n=1 Tax=Ectoca...	[more]
D7G8L3_ECTSI	4.170e-41	43.58	Rad60-SLD domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 292..371 e-value: 3.8E-11 score: 44.7
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 299..369 e-value: 8.3E-10 score: 38.4
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 295..370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1235	contig	F-serratus_M_contig1235:79164..91857 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1235.1775.1	mRNA_F-serratus_M_contig1235.1775.1	Fucus serratus male	mRNA	F-serratus_M_contig1235 78267..92019 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1235.1775.1 ID=prot_F-serratus_M_contig1235.1775.1|Name=mRNA_F-serratus_M_contig1235.1775.1|organism=Fucus serratus male|type=polypeptide|length=446bp
MELGESNTEKGEVPSEEVGNASDAESDAESDEVLFPYKVPEDVKPNSESD
DDDEDDDENLENDDDEGCDFNSSPEVSRVRRSKEESPSGATRADAIDFSS
DDEEERKFVPKRRREMDEAAMQAIVNATIEDNLRSDDEDGESLPRTAAAD
REFQRMKDEIARAERFDLPTRSCAPGGARGGPSRAAAEAAEALKQAAAAR
SKRELDSRRVKLTMVRSKNRRHVFHTKLGSRVGAIEEACREQVALVSRDE
QGAEICLYHEESLLNPTRTLAEVGLKSDATIRLDVKGGEVPDVQGDPLTL
TVKVEGGKPFKAEITTEMKFKTFTEGFIAAVGIPLERASECVFKVDGDRL
DPEGTPQAEDLEDGDQIDATFPADVMTGVQASPETVNLLAPLKKAAAMSR
VSRMASGGGGQDMPERIGTQSTSGGDGAVSDGGGRSDSDGCIVLD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022617	Rad60/SUMO-like_dom
IPR029071	Ubiquitin-like_domsf