mRNA_F-serratus_M_contig674.17763.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig674.17763.1
Unique NamemRNA_F-serratus_M_contig674.17763.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig674.17763.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.060e-5
Identity = 47/161 (29.19%), Postives = 70/161 (43.48%), Query Frame = 1 
Query:    1 LKALLMVLNDAYNGQLQHQWYVSTKQIPLVSVELCVTCRRLETSCIVVTTDTPLHLWRRRKVGETSED---RGHSRLPTLRISELIWKRSVAELPKESGQF--EVSPTNMVARSCNDRDRLDAAWSSASFRHLQRLSLMPVYNGAINDVVWPAPLLQLTLG 468
            L AL++ LN A  G+    WY ST Q+ L S+ELC +CR +    + V   TP  LWR       +     R  +R+P +R   + WK     L   +G    EV+  ++     +D  R    W       L  L L P +N ++  +  PA +  L  G
Sbjct:   13 LDALIIALNQASGGE----WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPR-GIQWPEK----LTLLGLGPGFNRSVEHLSLPASVRFLVFG 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig674.17763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT95_ECTSI3.060e-529.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig674contigF-serratus_M_contig674:371534..374340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2136
Cds size2121
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig674.17763.1prot_F-serratus_M_contig674.17763.1Fucus serratus malepolypeptideF-serratus_M_contig674 371549..374340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.2564383-UTR-F-serratus_M_contig674:371533..3715481622932063.2564383-UTR-F-serratus_M_contig674:371533..371548Fucus serratus maleUTRF-serratus_M_contig674 371534..371548 +
1690964127.8097308-UTR-F-serratus_M_contig674:371533..3715481690964127.8097308-UTR-F-serratus_M_contig674:371533..371548Fucus serratus maleUTRF-serratus_M_contig674 371534..371548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.270946-CDS-F-serratus_M_contig674:371548..3723431622932063.270946-CDS-F-serratus_M_contig674:371548..372343Fucus serratus maleCDSF-serratus_M_contig674 371549..372343 +
1690964127.8238325-CDS-F-serratus_M_contig674:371548..3723431690964127.8238325-CDS-F-serratus_M_contig674:371548..372343Fucus serratus maleCDSF-serratus_M_contig674 371549..372343 +
1622932063.2858446-CDS-F-serratus_M_contig674:372457..3728311622932063.2858446-CDS-F-serratus_M_contig674:372457..372831Fucus serratus maleCDSF-serratus_M_contig674 372458..372831 +
1690964127.8344457-CDS-F-serratus_M_contig674:372457..3728311690964127.8344457-CDS-F-serratus_M_contig674:372457..372831Fucus serratus maleCDSF-serratus_M_contig674 372458..372831 +
1622932063.2991583-CDS-F-serratus_M_contig674:373023..3734251622932063.2991583-CDS-F-serratus_M_contig674:373023..373425Fucus serratus maleCDSF-serratus_M_contig674 373024..373425 +
1690964127.843704-CDS-F-serratus_M_contig674:373023..3734251690964127.843704-CDS-F-serratus_M_contig674:373023..373425Fucus serratus maleCDSF-serratus_M_contig674 373024..373425 +
1622932063.3188682-CDS-F-serratus_M_contig674:373614..3739891622932063.3188682-CDS-F-serratus_M_contig674:373614..373989Fucus serratus maleCDSF-serratus_M_contig674 373615..373989 +
1690964127.856248-CDS-F-serratus_M_contig674:373614..3739891690964127.856248-CDS-F-serratus_M_contig674:373614..373989Fucus serratus maleCDSF-serratus_M_contig674 373615..373989 +
1622932063.3367853-CDS-F-serratus_M_contig674:374165..3743401622932063.3367853-CDS-F-serratus_M_contig674:374165..374340Fucus serratus maleCDSF-serratus_M_contig674 374166..374340 +
1690964127.872427-CDS-F-serratus_M_contig674:374165..3743401690964127.872427-CDS-F-serratus_M_contig674:374165..374340Fucus serratus maleCDSF-serratus_M_contig674 374166..374340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig674.17763.1

>prot_F-serratus_M_contig674.17763.1 ID=prot_F-serratus_M_contig674.17763.1|Name=mRNA_F-serratus_M_contig674.17763.1|organism=Fucus serratus male|type=polypeptide|length=707bp
MVLNDAYNGQLQHQWYVSTKQIPLVSVELCVTCRRLETSCIVVTTDTPLH
LWRRRKVGETSEDRGHSRLPTLRISELIWKRSVAELPKESGQFEVSPTNM
VARSCNDRDRLDAAWSSASFRHLQRLSLMPVYNGAINDVVWPAPLLQLTL
GGCFNFSVESVVWPVSLQYLKFGDAFNQPIAQVVWPPALRQVVLGRDFNM
PIESVVWPNSLQHLAFGYKFNQPIASAVWPASLQTLTLGEHFRQSVRDAI
WPAALQQIKLKNYLQSVDNVLWSSSLQQIIFGKDFNQPIIEVVWPPLLQW
LSFGHNFNQPIDGVVWSAALQQLIFGHDFNQSIVDVVWPPSLQLLSFGHN
FNQPIDHLVWTATIQKLTLGWCFDKPLCSVTWPTSPRLIALTFGYDFNQG
IDKMAWPSGLQQLVFGKTFNQSITGIVWPDSIKELSFGWDFNQPIDNVMW
PAALQQLMFGYDFNQPIADVVWPPYLQGLRFGHNFNQPIDHLVWPATFQK
LSLGWCFDKPLCSVTWPTSPRLIALTFGYNFNQAIEKMTWPLGLQHLVFG
KMFNQSIAGIVLQDSIKYLTFGWDFNQPIADVKWPSSLRHLEFGHDFNQP
IDNVAWPAELRLVRFGHDFDQPIVDVKWPPTLEQLTFGHDFNQPPTNITK
PPLDEMNWPVSLKSLIFGRGFNQPVDGEKWPVSLVHLYLGPNFGHPIDCV
RWPASLK
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mRNA from alignment at F-serratus_M_contig674:371534..374340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig674.17763.1 ID=mRNA_F-serratus_M_contig674.17763.1|Name=mRNA_F-serratus_M_contig674.17763.1|organism=Fucus serratus male|type=mRNA|length=2807bp|location=Sequence derived from alignment at F-serratus_M_contig674:371534..374340+ (Fucus serratus male)
CTGAAGGCCTTGCTTATGGTCCTAAATGACGCTTACAACGGGCAGCTACA
GCATCAGTGGTATGTATCCACCAAGCAAATACCGCTCGTGTCTGTGGAGC
TTTGCGTCACCTGCCGTAGGCTTGAGACATCGTGTATCGTTGTAACGACG
GACACACCGCTTCACCTCTGGCGACGGCGAAAGGTCGGGGAAACCTCAGA
GGATCGGGGACACTCGCGTTTACCGACGTTGAGAATCAGCGAACTAATTT
GGAAGAGATCGGTTGCCGAGCTACCAAAGGAAAGTGGGCAGTTCGAGGTG
TCACCCACGAACATGGTGGCGAGATCGTGTAATGATAGGGACCGATTAGA
CGCTGCGTGGTCGTCGGCTTCTTTTCGACACCTACAACGACTATCGCTGA
TGCCCGTATATAATGGGGCCATCAATGACGTCGTGTGGCCGGCCCCGCTC
CTACAACTTACGCTTGGGGGTTGTTTCAACTTCTCAGTAGAGAGCGTCGT
GTGGCCAGTATCACTACAATATTTGAAGTTTGGAGATGCTTTCAATCAGC
CCATCGCTCAGGTCGTGTGGCCACCCGCCTTGCGCCAAGTGGTATTAGGG
AGAGACTTCAATATGCCGATTGAATCCGTTGTATGGCCAAACTCCTTGCA
GCACTTGGCATTCGGGTATAAATTTAATCAGCCGATTGCCAGCGCCGTGT
GGCCGGCGTCGTTGCAGACGCTGACATTAGGGGAACACTTCCGCCAGTCA
GTTCGCGATGCCATCTGGCCAGCCGCACTACAACAGATCAAGCTGAAAAA
CTACTTGCAAGTAGAGTTCCTCACGGCTATGTGGTCTGACCGTTTACCAC
TCTACGGCCGAGCGGAGCCCAAGATCGTGATTGTCGAAATGGGGGCGTTG
TGTTTCAGGTGGAACCTCAATCAGTCGGTCGACAACGTGCTATGGTCATC
CTCGCTGCAGCAGATAATTTTCGGCAAAGACTTCAACCAGCCCATCATTG
AAGTGGTGTGGCCACCCTTGCTGCAGTGGCTGAGTTTTGGGCATAACTTT
AACCAGCCGATCGACGGCGTAGTTTGGTCGGCAGCACTGCAGCAGTTGAT
CTTCGGTCATGATTTCAACCAGTCTATAGTTGACGTGGTATGGCCGCCTT
CCCTGCAGTTGCTGAGTTTTGGGCATAACTTCAACCAGCCAATCGATCAC
CTTGTATGGACGGCAACGATTCAAAAGTTGACGTTAGGATGGTGCTTTGA
TAAGCCGCTTTGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCGT
TCGAGGTGCAAGGCTGCACTACAGAGGAGTTCGTTTCTCCAGTGGATAGG
CGACCTGAAGTGGATGTTGTGTGGGATTTCAACAAGCCACTCGACGGGGC
TATATTGCCTGCCCGATCGACTTGGCTCACATTCGGGAAGTACTTCAACC
AATCGATGGACTCCGTAGTTTGGCCGGAGTCATTGACGAGATTGACGTTC
GGCTATGACTTCAACCAGGGAATTGATAAAATGGCGTGGCCGTCGGGTTT
GCAGCAGCTAGTGTTTGGAAAAACGTTCAATCAATCAATCACCGGAATTG
TATGGCCAGACTCAATCAAAGAGCTATCTTTTGGGTGGGACTTTAACCAG
CCTATTGATAACGTGATGTGGCCAGCAGCACTGCAACAGTTGATGTTCGG
TTATGACTTCAATCAGCCTATCGCTGACGTGGTATGGCCACCTTATCTGC
AGGGGCTGAGGTTCGGACATAACTTCAACCAGCCGATTGATCACCTTGTT
TGGCCGGCAACATTTCAAAAACTGTCGTTAGGATGGTGTTTCGATAAGCC
GCTTTGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCGTTTGAAG
CGCAAGACTTCACTACGGAGTTTGTTTCTCCGGCGGGTAGGCGACGTGAA
GTGGATGTTGTTTGGGCTTTCAACAAGCCGCTCGACCGGGCTATGTTGCC
ACTCCAATCGACTCGGCTTACATTCGGGCGGCACTTCAACCAATCGATGG
ACCCCTTAGTTTGGCCGGAATTATTGACGAGACTGACATTTGGCTATAAC
TTCAACCAGGCAATTGAAAAAATGACGTGGCCGTTGGGGTTACAGCATCT
GGTGTTTGGAAAGATGTTCAATCAATCGATCGCAGGGATTGTATTACAAG
ACTCAATAAAATACTTGACCTTTGGGTGGGACTTTAACCAGCCTATTGCT
GACGTAAAGTGGCCGTCTTCTTTGAGGCATCTGGAGTTTGGCCATGACTT
TAACCAGCCCATCGATAACGTAGCGTGGCCGGCAGAGTTAAGGCTTGTGC
GATTCGGCCATGACTTTGACCAGCCTATCGTTGACGTAAAGTGGCCGCCT
ACTTTGGAACAGCTGACGTTTGGTCACGACTTCAACCAGCCCCCCACAAA
CATTACGTACCGTCTACTCTGCAACACCTGGTATTTGGTCACAACTTCAA
CCACTTCCTCATCAAGGTTATGTGACCGTCTACCCTGGAGCACCTGGCGT
GTGGTGACATGTTCGACCAGCCGATCGAAGCCGCCTTGTGGCCACAATTA
CTGGAGAAGCTTGAGATTTGCGGTGATTTTAGCAAGCCACCACTTGACGA
AATGAATTGGCCGGTGTCGCTTAAGAGTTTGATTTTTGGGCGGGGATTTA
ATCAACCAGTAGACGGTGAAAAGTGGCCGGTGTCTCTGGTGCACCTCTAT
CTAGGACCAAACTTTGGTCACCCAATAGACTGCGTGAGGTGGCCTGCATC
ACTCAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig674:371534..374340+

>mRNA_F-serratus_M_contig674.17763.1 ID=mRNA_F-serratus_M_contig674.17763.1|Name=mRNA_F-serratus_M_contig674.17763.1|organism=Fucus serratus male|type=CDS|length=4242bp|location=Sequence derived from alignment at F-serratus_M_contig674:371534..374340+ (Fucus serratus male)
ATGGTCCTAAATGACGCTTACAACGGGCAGCTACAGCATCAGTGGTATGT
ATCCACCAAGCAAATACCGCTCGTGTCTGTGGAGCTTTGCGTCACCTGCC
GTAGGCTTGAGACATCGTGTATCGTTGTAACGACGGACACACCGCTTCAC
CTCTGGCGACGGCGAAAGGTCGGGGAAACCTCAGAGGATCGGGGACACTC
GCGTTTACCGACGTTGAGAATCAGCGAACTAATTTGGAAGAGATCGGTTG
CCGAGCTACCAAAGGAAAGTGGGCAGTTCGAGGTGTCACCCACGAACATG
GTGGCGAGATCGTGTAATGATAGGGACCGATTAGACGCTGCGTGGTCGTC
GGCTTCTTTTCGACACCTACAACGACTATCGCTGATGCCCGTATATAATG
GGGCCATCAATGACGTCGTGTGGCCGGCCCCGCTCCTACAACTTACGCTT
GGGGGTTGTTTCAACTTCTCAGTAGAGAGCGTCGTGTGGCCAGTATCACT
ACAATATTTGAAGTTTGGAGATGCTTTCAATCAGCCCATCGCTCAGGTCG
TGTGGCCACCCGCCTTGCGCCAAGTGGTATTAGGGAGAGACTTCAATATG
CCGATTGAATCCGTTGTATGGCCAAACTCCTTGCAGCACTTGGCATTCGG
GTATAAATTTAATCAGCCGATTGCCAGCGCCGTGTGGCCGGCGTCGTTGC
AGACGCTGACATTAGGGGAACACTTCCGCCAGTCAGTTCGCGATGCCATC
TGGCCAGCCGCACTACAACAGATCAAGCTGAAAAACTACTTGCAAATGGT
CCTAAATGACGCTTACAACGGGCAGCTACAGCATCAGTGGTATGTATCCA
CCAAGCAAATACCGCTCGTGTCTGTGGAGCTTTGCGTCACCTGCCGTAGG
CTTGAGACATCGTGTATCGTTGTAACGACGGACACACCGCTTCACCTCTG
GCGACGGCGAAAGGTCGGGGAAACCTCAGAGGATCGGGGACACTCGCGTT
TACCGACGTTGAGAATCAGCGAACTAATTTGGAAGAGATCGGTTGCCGAG
CTACCAAAGGAAAGTGGGCAGTTCGAGGTGTCACCCACGAACATGGTGGC
GAGATCGTGTAATGATAGGGACCGATTAGACGCTGCGTGGTCGTCGGCTT
CTTTTCGACACCTACAACGACTATCGCTGATGCCCGTATATAATGGGGCC
ATCAATGACGTCGTGTGGCCGGCCCCGCTCCTACAACTTACGCTTGGGGG
TTGTTTCAACTTCTCAGTAGAGAGCGTCGTGTGGCCAGTATCACTACAAT
ATTTGAAGTTTGGAGATGCTTTCAATCAGCCCATCGCTCAGGTCGTGTGG
CCACCCGCCTTGCGCCAAGTGGTATTAGGGAGAGACTTCAATATGCCGAT
TGAATCCGTTGTATGGCCAAACTCCTTGCAGCACTTGGCATTCGGGTATA
AATTTAATCAGCCGATTGCCAGCGCCGTGTGGCCGGCGTCGTTGCAGACG
CTGACATTAGGGGAACACTTCCGCCAGTCAGTTCGCGATGCCATCTGGCC
AGCCGCACTACAACAGATCAAGCTGAAAAACTACTTGCAATCGGTCGACA
ACGTGCTATGGTCATCCTCGCTGCAGCAGATAATTTTCGGCAAAGACTTC
AACCAGCCCATCATTGAAGTGGTGTGGCCACCCTTGCTGCAGTGGCTGAG
TTTTGGGCATAACTTTAACCAGCCGATCGACGGCGTAGTTTGGTCGGCAG
CACTGCAGCAGTTGATCTTCGGTCATGATTTCAACCAGTCTATAGTTGAC
GTGGTATGGCCGCCTTCCCTGCAGTTGCTGAGTTTTGGGCATAACTTCAA
CCAGCCAATCGATCACCTTGTATGGACGGCAACGATTCAAAAGTTGACGT
TAGGATGGTGCTTTGATAAGCCGCTTTGCAGCGTCACATGGCCCACCTCG
CCACGGCTGATTGCTCGGTCGACAACGTGCTATGGTCATCCTCGCTGCAG
CAGATAATTTTCGGCAAAGACTTCAACCAGCCCATCATTGAAGTGGTGTG
GCCACCCTTGCTGCAGTGGCTGAGTTTTGGGCATAACTTTAACCAGCCGA
TCGACGGCGTAGTTTGGTCGGCAGCACTGCAGCAGTTGATCTTCGGTCAT
GATTTCAACCAGTCTATAGTTGACGTGGTATGGCCGCCTTCCCTGCAGTT
GCTGAGTTTTGGGCATAACTTCAACCAGCCAATCGATCACCTTGTATGGA
CGGCAACGATTCAAAAGTTGACGTTAGGATGGTGCTTTGATAAGCCGCTT
TGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCATTGACGTTCGG
CTATGACTTCAACCAGGGAATTGATAAAATGGCGTGGCCGTCGGGTTTGC
AGCAGCTAGTGTTTGGAAAAACGTTCAATCAATCAATCACCGGAATTGTA
TGGCCAGACTCAATCAAAGAGCTATCTTTTGGGTGGGACTTTAACCAGCC
TATTGATAACGTGATGTGGCCAGCAGCACTGCAACAGTTGATGTTCGGTT
ATGACTTCAATCAGCCTATCGCTGACGTGGTATGGCCACCTTATCTGCAG
GGGCTGAGGTTCGGACATAACTTCAACCAGCCGATTGATCACCTTGTTTG
GCCGGCAACATTTCAAAAACTGTCGTTAGGATGGTGTTTCGATAAGCCGC
TTTGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCATTGACGTTC
GGCTATGACTTCAACCAGGGAATTGATAAAATGGCGTGGCCGTCGGGTTT
GCAGCAGCTAGTGTTTGGAAAAACGTTCAATCAATCAATCACCGGAATTG
TATGGCCAGACTCAATCAAAGAGCTATCTTTTGGGTGGGACTTTAACCAG
CCTATTGATAACGTGATGTGGCCAGCAGCACTGCAACAGTTGATGTTCGG
TTATGACTTCAATCAGCCTATCGCTGACGTGGTATGGCCACCTTATCTGC
AGGGGCTGAGGTTCGGACATAACTTCAACCAGCCGATTGATCACCTTGTT
TGGCCGGCAACATTTCAAAAACTGTCGTTAGGATGGTGTTTCGATAAGCC
GCTTTGCAGCGTCACATGGCCCACCTCGCCACGGCTGATTGCACTGACAT
TTGGCTATAACTTCAACCAGGCAATTGAAAAAATGACGTGGCCGTTGGGG
TTACAGCATCTGGTGTTTGGAAAGATGTTCAATCAATCGATCGCAGGGAT
TGTATTACAAGACTCAATAAAATACTTGACCTTTGGGTGGGACTTTAACC
AGCCTATTGCTGACGTAAAGTGGCCGTCTTCTTTGAGGCATCTGGAGTTT
GGCCATGACTTTAACCAGCCCATCGATAACGTAGCGTGGCCGGCAGAGTT
AAGGCTTGTGCGATTCGGCCATGACTTTGACCAGCCTATCGTTGACGTAA
AGTGGCCGCCTACTTTGGAACAGCTGACGTTTGGTCACGACTTCAACCAG
CCCCCCACAAACATTACACTGACATTTGGCTATAACTTCAACCAGGCAAT
TGAAAAAATGACGTGGCCGTTGGGGTTACAGCATCTGGTGTTTGGAAAGA
TGTTCAATCAATCGATCGCAGGGATTGTATTACAAGACTCAATAAAATAC
TTGACCTTTGGGTGGGACTTTAACCAGCCTATTGCTGACGTAAAGTGGCC
GTCTTCTTTGAGGCATCTGGAGTTTGGCCATGACTTTAACCAGCCCATCG
ATAACGTAGCGTGGCCGGCAGAGTTAAGGCTTGTGCGATTCGGCCATGAC
TTTGACCAGCCTATCGTTGACGTAAAGTGGCCGCCTACTTTGGAACAGCT
GACGTTTGGTCACGACTTCAACCAGCCCCCCACAAACATTACCAAGCCAC
CACTTGACGAAATGAATTGGCCGGTGTCGCTTAAGAGTTTGATTTTTGGG
CGGGGATTTAATCAACCAGTAGACGGTGAAAAGTGGCCGGTGTCTCTGGT
GCACCTCTATCTAGGACCAAACTTTGGTCACCCAATAGACTGCGTGAGGT
GGCCTGCATCACTCAAACAAGCCACCACTTGACGAAATGAATTGGCCGGT
GTCGCTTAAGAGTTTGATTTTTGGGCGGGGATTTAATCAACCAGTAGACG
GTGAAAAGTGGCCGGTGTCTCTGGTGCACCTCTATCTAGGACCAAACTTT
GGTCACCCAATAGACTGCGTGAGGTGGCCTGCATCACTCAAA
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