mRNA_F-serratus_M_contig6738.17760.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6738.17760.1
Unique NamemRNA_F-serratus_M_contig6738.17760.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 80.9 bits (198), Expect = 5.940e-17
Identity = 47/110 (42.73%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLF----GVTGD-----------WRTAALDPGAWYNTVHE 288
            LSY  AL+ T+ ESIETT+R RRL +AGA+ R  + RLP R+M G +   G   PG + K W   +A+DLR+F    G T D           W TAA   G WY  + E
Sbjct:   52 LSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILE 161
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BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.820e-16
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGV 228
            LSY   L+R + ES+E T+R RRLL+AGAL R  D RLPKR+M GEL    K   G +E+ W  CV DDL+ FG 
Sbjct:  177 LSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 251
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BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.930e-16
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGVTGDWRTAALDP 261
            LSY   L+R + +S+E T+R RRLL+AG+L R  D RLPKR+M GEL    K   G +E+ W  CV DDL+ FG   D  +   DP
Sbjct:   45 LSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 128
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 79.0 bits (193), Expect = 4.360e-16
Identity = 47/110 (42.73%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLR--------------LFGV-TGDWRTAALDPGAWYNTVHE 288
            LSY  AL+ T+ ESIETT+R RRL +AG + R    RLP RVM G +       PG + K W  CV +DLR              +FGV T  W TAA   G WY  + E
Sbjct:   14 LSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILE 123
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.780e-15
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGVTGDWRTAALDP 261
            LSY   L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    K   G +E+ W  CV DDL+ FG   D  +   DP
Sbjct:  201 LSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTNTDP 284
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.350e-15
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGV 228
            LSY   L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    K   G +E+ W  CV DDL+ FG 
Sbjct:  440 LSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 514
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.840e-15
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 LSYKDAL-QRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGVT-----GDWRTAALDPGAWYNTVHEG 291
            LSY  AL Q    E+IE TVR RRL +AG + RM D+RLPKR++ G +   G    G +E +W  C+ +DL  F +      G W+ +A DP  WYN V +G
Sbjct:  127 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM-GGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDG 227
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.670e-15
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFGVTGDWRTAALDP 261
            LSY   L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    K   G +E+ W  CV DDL  FG   D  +   DP
Sbjct:  529 LSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGA--DHGSTKTDP 612
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.110e-14
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLFG---VTGDW 240
            LSY  AL+R   +S+E TVR RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DD+++F    + G W
Sbjct:  207 LSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
[Close]
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.290e-14
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    4 LSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELENAGKCGPGRKEKEWTDCVADDLRLF 222
            LSY  AL+R   +S+E TVR RRLL+AGA+ R  D RLPKR+M GEL      G G  E+ W  C+ DD+++F
Sbjct:  156 LSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6738.17760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE5.940e-1742.73hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JAH7_9PHAE2.820e-1653.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYE2_9PHAE2.930e-1647.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI001AA1AADC4.360e-1642.73hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5K1X4_9PHAE1.780e-1548.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLT1_9PHAE3.350e-1552.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCQ1_9PHAE3.840e-1543.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS82_9PHAE4.670e-1548.84Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KLX9_9PHAE1.110e-1447.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE1.290e-1450.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6738contigF-serratus_M_contig6738:17796..18086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog13735.ENSPSIP00000001585
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.2038195-CDS-F-serratus_M_contig6738:17795..180861622932063.2038195-CDS-F-serratus_M_contig6738:17795..18086Fucus serratus maleCDSF-serratus_M_contig6738 17796..18086 -
1690964127.7880523-CDS-F-serratus_M_contig6738:17795..180861690964127.7880523-CDS-F-serratus_M_contig6738:17795..18086Fucus serratus maleCDSF-serratus_M_contig6738 17796..18086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6738.17760.1prot_F-serratus_M_contig6738.17760.1Fucus serratus malepolypeptideF-serratus_M_contig6738 17796..18086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6738.17760.1

>prot_F-serratus_M_contig6738.17760.1 ID=prot_F-serratus_M_contig6738.17760.1|Name=mRNA_F-serratus_M_contig6738.17760.1|organism=Fucus serratus male|type=polypeptide|length=97bp
ILSYKDALQRTQSESIETTVRTRRLLWAGALPRMGDHRLPKRVMSGELEN
AGKCGPGRKEKEWTDCVADDLRLFGVTGDWRTAALDPGAWYNTVHEG
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mRNA from alignment at F-serratus_M_contig6738:17796..18086-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6738.17760.1 ID=mRNA_F-serratus_M_contig6738.17760.1|Name=mRNA_F-serratus_M_contig6738.17760.1|organism=Fucus serratus male|type=mRNA|length=291bp|location=Sequence derived from alignment at F-serratus_M_contig6738:17796..18086- (Fucus serratus male)
ATCCTCTCGTACAAAGATGCCCTTCAGCGAACCCAATCCGAGAGTATCGA
AACAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTACCCCGCA
TGGGTGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAAC
GCGGGGAAATGTGGACCGGGGAGGAAGGAGAAAGAATGGACGGACTGCGT
GGCAGATGATCTTCGGCTGTTTGGCGTCACGGGGGACTGGAGAACCGCCG
CACTTGACCCTGGGGCGTGGTATAACACGGTACACGAAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6738:17796..18086-

>mRNA_F-serratus_M_contig6738.17760.1 ID=mRNA_F-serratus_M_contig6738.17760.1|Name=mRNA_F-serratus_M_contig6738.17760.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig6738:17796..18086- (Fucus serratus male)
ATCCTCTCGTACAAAGATGCCCTTCAGCGAACCCAATCCGAGAGTATCGA
AACAACCGTACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTACCCCGCA
TGGGTGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAAC
GCGGGGAAATGTGGACCGGGGAGGAAGGAGAAAGAATGGACGGACTGCGT
GGCAGATGATCTTCGGCTGTTTGGCGTCACGGGGGACTGGAGAACCGCCG
CACTTGACCCTGGGGCGTGGTATAACACGGTACACGAAGGGATCCTCTCG
TACAAAGATGCCCTTCAGCGAACCCAATCCGAGAGTATCGAAACAACCGT
ACGCACGAGGAGGTTGTTGTGGGCGGGGGCGCTACCCCGCATGGGTGACC
ACAGGCTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGCGGGGAAA
TGTGGACCGGGGAGGAAGGAGAAAGAATGGACGGACTGCGTGGCAGATGA
TCTTCGGCTGTTTGGCGTCACGGGGGACTGGAGAACCGCCGCACTTGACC
CTGGGGCGTGGTATAACACGGTACACGAAGGG
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