mRNA_F-serratus_M_contig673.17759.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig673.17759.1
Unique NamemRNA_F-serratus_M_contig673.17759.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 66.6 bits (161), Expect = 2.220e-12
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELL 153
            N VRFPLLAA+AR  LAIPA Q  SER+FS+AG IV + R+RL SENVE+L
Sbjct:  110 NIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 63.9 bits (154), Expect = 3.620e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELL 153
            N  RFP+LAA+AR +LAIPA Q  SER+FS AG IVT TR++L  ENVE L
Sbjct:   24 NVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKL 74          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.580e-11
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    7 VRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            + +PLLAALAR  LAIP+ QAQSERVFS+AG  VT TR+RL  ENVELLV
Sbjct:  492 LEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLV 541          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
             A  +P LA+LAR  L IPA QAQSERVFSSAG +VT+TR R+  ENV L+V
Sbjct:  487 KAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMV 538          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 57.0 bits (136), Expect = 6.130e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            N  ++P LA +AR HLA+P     SERVFS+AG IVT  R+ LS ENV++L+
Sbjct:   74 NECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILM 125          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: R7TXQ1_CAPTE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TXQ1_CAPTE)

HSP 1 Score: 55.1 bits (131), Expect = 6.750e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   13 FPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            FP +A LA+ +LAIPA  A SERVFS+AG IVT  R+RL+ E V +LV
Sbjct:    6 FPRIALLAKKYLAIPATSAPSERVFSTAGNIVTPKRSRLNPEKVNMLV 53          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 55.1 bits (131), Expect = 8.750e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   13 FPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            +P++AAL + +LAI A  A SERVFS+AG IVT  RN LS+ENV LL+
Sbjct:   13 YPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLI 60          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: A0A6V7UR76_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7UR76_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 1.790e-8
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            NA+++PLLA LA  + + PA  ++SER+FS+AGQIV+  R RL  EN+E L+
Sbjct:   89 NAIKWPLLATLANKYFSAPATSSESERLFSTAGQIVSNLRKRLLPENIEKLL 140          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: UPI00148F4C44 (zinc finger BED domain-containing protein 1-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F4C44)

HSP 1 Score: 57.4 bits (137), Expect = 1.820e-8
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
            NA RFP LA LAR +L IPA    SERVFSSAG IV++ R+RL+ E+V+ L+
Sbjct:  179 NAGRFPRLAKLARQYLCIPATSVPSERVFSSAGLIVSRLRSRLTPEHVDKLI 230          
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Match: A0A151I7T7_9HYME (Zinc finger BED domain-containing protein 1 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7T7_9HYME)

HSP 1 Score: 57.0 bits (136), Expect = 2.210e-8
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVELLV 156
             A RFP+L+ LAR +L IPA  A SER FS+AG IVT  R+ LS ENV +LV
Sbjct:  153 RADRFPILSNLARKYLCIPASSANSERTFSTAGNIVTSKRSCLSPENVSMLV 204          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig673.17759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000EAB1B8F2.220e-1268.63zinc finger BED domain-containing protein 1-like n... [more]
A0A151I7P1_9HYME3.620e-1264.71Zinc finger BED domain-containing protein 1 (Fragm... [more]
D8LCS5_ECTSI5.580e-1172.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE2.380e-963.46Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI00109FC6126.130e-953.85zinc finger BED domain-containing protein 4-like n... [more]
R7TXQ1_CAPTE6.750e-960.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ca... [more]
E2BS40_HARSA8.750e-960.42Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A6V7UR76_9BILA1.790e-851.92Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
UPI00148F4C441.820e-859.62zinc finger BED domain-containing protein 1-like n... [more]
A0A151I7T7_9HYME2.210e-859.62Zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig673contigF-serratus_M_contig673:104229..104384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D8LCS5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932063.1503358-CDS-F-serratus_M_contig673:104228..1043841622932063.1503358-CDS-F-serratus_M_contig673:104228..104384Fucus serratus maleCDSF-serratus_M_contig673 104229..104384 -
1690964127.7705793-CDS-F-serratus_M_contig673:104228..1043841690964127.7705793-CDS-F-serratus_M_contig673:104228..104384Fucus serratus maleCDSF-serratus_M_contig673 104229..104384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig673.17759.1prot_F-serratus_M_contig673.17759.1Fucus serratus malepolypeptideF-serratus_M_contig673 104229..104384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig673.17759.1

>prot_F-serratus_M_contig673.17759.1 ID=prot_F-serratus_M_contig673.17759.1|Name=mRNA_F-serratus_M_contig673.17759.1|organism=Fucus serratus male|type=polypeptide|length=52bp
NAVRFPLLAALARGHLAIPALQAQSERVFSSAGQIVTQTRNRLSSENVEL
LV
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mRNA from alignment at F-serratus_M_contig673:104229..104384-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig673.17759.1 ID=mRNA_F-serratus_M_contig673.17759.1|Name=mRNA_F-serratus_M_contig673.17759.1|organism=Fucus serratus male|type=mRNA|length=156bp|location=Sequence derived from alignment at F-serratus_M_contig673:104229..104384- (Fucus serratus male)
AACGCCGTCAGATTCCCGCTGCTAGCGGCGCTTGCCCGTGGCCATTTGGC CATCCCGGCGTTGCAGGCGCAGTCGGAGCGCGTGTTCTCGAGCGCTGGGC AGATTGTCACCCAAACGCGCAACCGCCTGTCATCGGAAAACGTCGAGCTT CTGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig673:104229..104384-

>mRNA_F-serratus_M_contig673.17759.1 ID=mRNA_F-serratus_M_contig673.17759.1|Name=mRNA_F-serratus_M_contig673.17759.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig673:104229..104384- (Fucus serratus male)
AACGCCGTCAGATTCCCGCTGCTAGCGGCGCTTGCCCGTGGCCATTTGGC
CATCCCGGCGTTGCAGGCGCAGTCGGAGCGCGTGTTCTCGAGCGCTGGGC
AGATTGTCACCCAAACGCGCAACCGCCTGTCATCGGAAAACGTCGAGCTT
CTGGTGAACGCCGTCAGATTCCCGCTGCTAGCGGCGCTTGCCCGTGGCCA
TTTGGCCATCCCGGCGTTGCAGGCGCAGTCGGAGCGCGTGTTCTCGAGCG
CTGGGCAGATTGTCACCCAAACGCGCAACCGCCTGTCATCGGAAAACGTC
GAGCTTCTGGTG
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