mRNA_F-serratus_M_contig6717.17751.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6717.17751.1
Unique NamemRNA_F-serratus_M_contig6717.17751.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6717.17751.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.940e-19
Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   49 QHGGEEGRRGTPVMYLEAEFEQRLEAALKFTDDMIRKSVLDGERR-------RGLKAAVVDPHTNAEQLEELSRAQGELDVVRHRLETLSREKESVAAGASVRIEELEAKVQEGETQ 378
            QH  E        + LE E E R +AA      +  + V+  ER+       RGLKAAVVD  TNAEQLEE+SRAQGEL+V+R RLE LS+EKE+VA GAS ++EELEAKV EGE Q
Sbjct:  672 QHSKEMEAERVARVKLETESEIRAQAATADKAALREELVVAEERQLELEAEVRGLKAAVVDAQTNAEQLEEMSRAQGELEVLRRRLEALSKEKENVAIGASAKVEELEAKVLEGELQ 788
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BLAST of mRNA_F-serratus_M_contig6717.17751.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-19
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:   49 QHGGEEGRRGTPVMYLEAEFEQRLEAALKFTDDMIRKSVLDGERR-------RGLKAAVVDPHTNAEQLEELSRAQGELDVVRHRLETLSREKESVAAGASVRIEELEAKVQEGETQ 378
            QH  E        + LE E E R +AA+     +  + V+  ER+       RGL+AAVVD  TNAEQLEE+SRAQGEL+V+R RLE LS+EKE+VA GAS ++EELEAKV EGE Q
Sbjct:  800 QHSKEMEAERVARVKLETESEIRAQAAMADKAALREELVVAEERQVELEAEVRGLRAAVVDAQTNAEQLEEMSRAQGELEVLRRRLEALSKEKENVAIGASAKVEELEAKVLEGELQ 916
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6717.17751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUV4_ECTSI1.940e-1953.85Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJH6_9PHAE1.980e-1952.99Kinesin motor domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6717contigF-serratus_M_contig6717:26539..28177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D7FUV4
KEGG koko:K07936,ko:K10406
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147,ko04812
Exons4
Model size382
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6717.17751.1prot_F-serratus_M_contig6717.17751.1Fucus serratus malepolypeptideF-serratus_M_contig6717 26539..28175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932061.9158428-CDS-F-serratus_M_contig6717:26538..266051622932061.9158428-CDS-F-serratus_M_contig6717:26538..26605Fucus serratus maleCDSF-serratus_M_contig6717 26539..26605 +
1690964127.1604865-CDS-F-serratus_M_contig6717:26538..266051690964127.1604865-CDS-F-serratus_M_contig6717:26538..26605Fucus serratus maleCDSF-serratus_M_contig6717 26539..26605 +
1622932061.934355-CDS-F-serratus_M_contig6717:26986..270421622932061.934355-CDS-F-serratus_M_contig6717:26986..27042Fucus serratus maleCDSF-serratus_M_contig6717 26987..27042 +
1690964127.1795747-CDS-F-serratus_M_contig6717:26986..270421690964127.1795747-CDS-F-serratus_M_contig6717:26986..27042Fucus serratus maleCDSF-serratus_M_contig6717 26987..27042 +
1622932061.9556694-CDS-F-serratus_M_contig6717:27439..275641622932061.9556694-CDS-F-serratus_M_contig6717:27439..27564Fucus serratus maleCDSF-serratus_M_contig6717 27440..27564 +
1690964127.1894467-CDS-F-serratus_M_contig6717:27439..275641690964127.1894467-CDS-F-serratus_M_contig6717:27439..27564Fucus serratus maleCDSF-serratus_M_contig6717 27440..27564 +
1622932061.9734693-CDS-F-serratus_M_contig6717:28045..281751622932061.9734693-CDS-F-serratus_M_contig6717:28045..28175Fucus serratus maleCDSF-serratus_M_contig6717 28046..28175 +
1690964127.1989076-CDS-F-serratus_M_contig6717:28045..281751690964127.1989076-CDS-F-serratus_M_contig6717:28045..28175Fucus serratus maleCDSF-serratus_M_contig6717 28046..28175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6717.17751.1

>prot_F-serratus_M_contig6717.17751.1 ID=prot_F-serratus_M_contig6717.17751.1|Name=mRNA_F-serratus_M_contig6717.17751.1|organism=Fucus serratus male|type=polypeptide|length=126bp
GGKRGGFEVPRGACGGQHGGEEGRRGTPVMYLEAEFEQRLEAALKFTDDM
IRKSVLDGERRRGLKAAVVDPHTNAEQLEELSRAQGELDVVRHRLETLSR
EKESVAAGASVRIEELEAKVQEGETQ
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mRNA from alignment at F-serratus_M_contig6717:26539..28177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6717.17751.1 ID=mRNA_F-serratus_M_contig6717.17751.1|Name=mRNA_F-serratus_M_contig6717.17751.1|organism=Fucus serratus male|type=mRNA|length=1639bp|location=Sequence derived from alignment at F-serratus_M_contig6717:26539..28177+ (Fucus serratus male)
GGCGGCAAGCGCGGAGGCTTCGAGGTACCGCGCGGAGCTTGTGGAGGCCA
GCATGGAGGCGAAGAAGGTGACGCCCACGATACATCAGTAACTGACTGAT
TGCACCCTCTGCCTGTCATACCATCAAATCAAGTCTTGGTTGCTTTTGCT
GTAGTCTATAAAGTGTATTGCTCTATTACCGCCTCATTGCCTTGTTGTAC
GATATCTTGAAGTGTTTAGTCTAGCTTGCTTTTAGTAATAATGATGCTAG
GTGTTTTGTGGTGCATTCGAGTGTCTCGTGTAAGTGTATAAGGGTCACGT
GTTTATGCCGTTACATGTGCTATAAGTAGTGAAGTGTTTCCTGTCTCAAA
GGGTTCGCGTACAAATTACTCCGAGTTTTGTGTTCATTATTAACGCAGGC
CGGGTTCTATAAAAGGGGATAATATAGATCGATAGTGTTGTGCCGCAGGT
AGGCGAGGGACACCCGTGATGTACTTGGAGGCGGAGTTTGAGCAACGTTT
GGAGGTATGTGAGGGAACAGTACTTACCGTTCGCTGCTTCCAGTAGGACT
CCGTACTATATAGTATATATAGTACTTTGGTTGGCGCGGGGGGAGGCTAC
TAAAACTATGGATGTTTGTGAGTGTTTTCTTTTTGTTGTATGTGTGGGTG
TACTACAAGTGATGATACCTTCAATATAATGCATTACTTATTTGTTTTCC
CTTTGGGAGGTGGCGTTTTGGGGGGGGGGGGGGGGGGAGTGCCTTATTTT
TGCTTGCCCCCTTTCATGGTTGGATATAAAGCTAGTGCCGTTACGATTGG
TCAATGGGCAATAGAGTTTTTTGCTTGCCTCATAGCTGCTGTGTTACGAT
TGGTCAGAATCGGTCCCGTCACGCAAACTACTTGTACGCGCGTTATGGCA
GGCCGCGTTGAAGTTTACGGATGACATGATACGCAAGAGTGTGCTCGACG
GAGAGCGTCGCCGGGGGCTAAAGGCGGCCGTGGTGGACCCCCACACCAAC
GCGGAACAGCTCGAGGAGCTGAGCAGGTCCGTTGTGTCACAACTACAATG
TTTTTGGTTTTGCTGTTCTTCTGGTGTCCCTGCATGGCGATTAATGTAAG
TGTACGGTATAACTGTGGGCTTCTCCCCGATGTTCTATTGTATTATACTG
TTGACCCAATGTTAGTACCACGGGGGAACCCGTTTGAATGCCATGACGAG
GTTTTGTATTTGCAGCCTATGATCCCACCTAAACGTTTTGACATTTTTCC
CCCCTGACTGCTGACTGGGGGATGCTCAGAAGGTCTAGGCGGGTTCTGAT
TTTTCTTTAAACAATACTGTAATGTAGTTGCAACTATTAATATTAATAGG
TAATGATGTCTTATCGTGTTTTCTGATAATAGTCCTCCATTTCAGGCGGA
AAGGCGGAAAAATCGCCCTCTCCTCCCCCTCCCCCTTCGAAAGCCACCTT
CGGGCACGATCAATAGAGAACCTACTATCGATAATATTTGTGCAACAAAC
TTGTCAGGGCGCAGGGCGAGCTGGACGTGGTTCGACACCGTCTGGAAACT
CTGTCTCGCGAGAAGGAGAGCGTGGCGGCCGGTGCCTCCGTCAGGATCGA
AGAGCTCGAGGCCAAGGTGCAGGAGGGCGAGACGCAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6717:26539..28177+

>mRNA_F-serratus_M_contig6717.17751.1 ID=mRNA_F-serratus_M_contig6717.17751.1|Name=mRNA_F-serratus_M_contig6717.17751.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig6717:26539..28177+ (Fucus serratus male)
GGCGGCAAGCGCGGAGGCTTCGAGGTACCGCGCGGAGCTTGTGGAGGCCA
GCATGGAGGCGAAGAAGGGCGGCAAGCGCGGAGGCTTCGAGGTACCGCGC
GGAGCTTGTGGAGGCCAGCATGGAGGCGAAGAAGGTAGGCGAGGGACACC
CGTGATGTACTTGGAGGCGGAGTTTGAGCAACGTTTGGAGGTAGGCGAGG
GACACCCGTGATGTACTTGGAGGCGGAGTTTGAGCAACGTTTGGAGGCCG
CGTTGAAGTTTACGGATGACATGATACGCAAGAGTGTGCTCGACGGAGAG
CGTCGCCGGGGGCTAAAGGCGGCCGTGGTGGACCCCCACACCAACGCGGA
ACAGCTCGAGGAGCTGAGCAGGCCGCGTTGAAGTTTACGGATGACATGAT
ACGCAAGAGTGTGCTCGACGGAGAGCGTCGCCGGGGGCTAAAGGCGGCCG
TGGTGGACCCCCACACCAACGCGGAACAGCTCGAGGAGCTGAGCAGGGCG
CAGGGCGAGCTGGACGTGGTTCGACACCGTCTGGAAACTCTGTCTCGCGA
GAAGGAGAGCGTGGCGGCCGGTGCCTCCGTCAGGATCGAAGAGCTCGAGG
CCAAGGTGCAGGAGGGCGAGACGCAAGGCGCAGGGCGAGCTGGACGTGGT
TCGACACCGTCTGGAAACTCTGTCTCGCGAGAAGGAGAGCGTGGCGGCCG
GTGCCTCCGTCAGGATCGAAGAGCTCGAGGCCAAGGTGCAGGAGGGCGAG
ACGCAA
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