mRNA_F-serratus_M_contig671.17740.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig671.17740.1
Unique NamemRNA_F-serratus_M_contig671.17740.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig671.17740.1 vs. uniprot
Match: D8LIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU3_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.140e-24
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:  175 DKEYRATKTWSVEELQLLWELKTKDPELPPNRVAEILFKTTGIRKTGDQCRTRWTK 342
            DKEYRATKTWSV ELQLLWELKT  P+LPPNRVAE+++K TGIRKTGDQCRTRWTK
Sbjct:  288 DKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTK 343
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BLAST of mRNA_F-serratus_M_contig671.17740.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.410e-24
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:  175 DKEYRATKTWSVEELQLLWELKTKDPELPPNRVAEILFKTTGIRKTGDQCRTRWTK 342
            DKEYRATKTWSV ELQLLWELKT  P+LPPNRVAE+++K TGIRKTGDQCRTRWTK
Sbjct:  116 DKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTK 171
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig671.17740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIU3_ECTSI1.140e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFS7_9PHAE2.410e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig671contigF-serratus_M_contig671:60670..63961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D8LIU3
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00166,ko:K09422
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008677,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-20_001560.1
EC1.2.4.4
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000
Exons3
Model size345
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig671.17740.1prot_F-serratus_M_contig671.17740.1Fucus serratus malepolypeptideF-serratus_M_contig671 60670..63959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932059.8574114-CDS-F-serratus_M_contig671:60669..607331622932059.8574114-CDS-F-serratus_M_contig671:60669..60733Fucus serratus maleCDSF-serratus_M_contig671 60670..60733 +
1690964125.9959283-CDS-F-serratus_M_contig671:60669..607331690964125.9959283-CDS-F-serratus_M_contig671:60669..60733Fucus serratus maleCDSF-serratus_M_contig671 60670..60733 +
1622932059.8711321-CDS-F-serratus_M_contig671:60985..611711622932059.8711321-CDS-F-serratus_M_contig671:60985..61171Fucus serratus maleCDSF-serratus_M_contig671 60986..61171 +
1690964126.012891-CDS-F-serratus_M_contig671:60985..611711690964126.012891-CDS-F-serratus_M_contig671:60985..61171Fucus serratus maleCDSF-serratus_M_contig671 60986..61171 +
1622932059.886923-CDS-F-serratus_M_contig671:63867..639591622932059.886923-CDS-F-serratus_M_contig671:63867..63959Fucus serratus maleCDSF-serratus_M_contig671 63868..63959 +
1690964126.02329-CDS-F-serratus_M_contig671:63867..639591690964126.02329-CDS-F-serratus_M_contig671:63867..63959Fucus serratus maleCDSF-serratus_M_contig671 63868..63959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig671.17740.1

>prot_F-serratus_M_contig671.17740.1 ID=prot_F-serratus_M_contig671.17740.1|Name=mRNA_F-serratus_M_contig671.17740.1|organism=Fucus serratus male|type=polypeptide|length=114bp
SSPAQAARHARNGTKVMQASGGVQAVGIDKPSPQLRRSQQQQQQVAVGKE
EIEEDPSGDKEYRATKTWSVEELQLLWELKTKDPELPPNRVAEILFKTTG
IRKTGDQCRTRWTK
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mRNA from alignment at F-serratus_M_contig671:60670..63961+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig671.17740.1 ID=mRNA_F-serratus_M_contig671.17740.1|Name=mRNA_F-serratus_M_contig671.17740.1|organism=Fucus serratus male|type=mRNA|length=3292bp|location=Sequence derived from alignment at F-serratus_M_contig671:60670..63961+ (Fucus serratus male)
TCGTCCCCGGCCCAGGCGGCGCGGCATGCAAGGAACGGGACGAAGGTCAT
GCAAGCCTCTGGAGGTGAGGGAGGTGAGAGAGAGTAGGGGGTGCGGTGTA
GAATTTTTGTAAATAGAGTAGATGTAAATATTTATTTAGCTCTATACAAG
TACCAAGTATATTATAAATTTTGTACCAGATATCTTTGTATCTACGGTAC
TGGTGTATGTATACAACCCAGCATTTTGGGCCATCCTTCTCGACTCGGCC
GGAAAGTCTTCGGTATTTCACCATCCCCCCCCCCCCCCCCCGGGCATCCT
CCTCCCTTCCGAGCAGGCGTTCAGGCTGTGGGTATAGATAAACCGTCTCC
CCAGCTGCGGCGATCACAGCAGCAGCAGCAGCAGGTGGCGGTGGGAAAGG
AGGAAATTGAGGAAGACCCATCGGGAGACAAGGAGTACCGCGCCACCAAG
ACGTGGTCCGTGGAGGAGCTGCAGCTGCTATGGGAGCTCAAGACCAAGGA
CCGTAAGTTTTTCGCCGCTACTCTTTTCATTGTCGGGGGGGTCGGAAAAG
GGAAAGGAGCGTGTTGTTTGCAATCTTATCTTATTTTACTACTAGGGTAG
TTGTTTTATCGTATTGATAGGGCTATCGTACTACAAATACGTTACAGTAT
TTATGATAGTACTTTAACTAGAGTACTAGAGCTCTAGATTATTAATTGTA
GATTAATAGTACTGTAGTATTGATAGATTATTAATAGTACCAGGTAGGGG
TTTATCGTACAGGTCTATTAATAGTCTACTACTGTGTGTGCTAGACCCCG
CTGGTTTTTCTTCTTTCTTCTTCTTTTTTTGGTCGTGTGTAAATTGTCCA
TACCCCCCTTTTTTTTTTTTAATTTGTCCAGGGGGGGGCATATTACAAAA
TATAACTTCAATATAAAAAGAGAACTGTAAAATCAAACCTGCAATTCTCC
TCTTGAAAAAAAAACAATATGGGTACATGAGATTGAATTTTTATGAGTAC
AATTCACGAAATGATCCGTCCGATAAAGGGACACCCCGCGTCAAATTGGA
AATTTCGAAGAAAAGAGCGTCACCAAGCATTCAAAATAAGTAGTATATGC
TAAACTAGACACTATTAATAGACATAGAAACCCAAGCGGTTGAAGCAATC
AGTGACGATCGCTCGTACGGTAACTCGCCTGCCTCGAATAGTCTTCAGCT
CCAGGCGACGGGAGCGTCTTTCCATCGCGCACCAGGATTTTTTTTTTGGG
GGGGAGGGAGGGAGGGAGGGAGGGGAAGGAGGGGGGACGACAATTGAACA
ATAGAACATACTATTAATAATAATAGGTACGACGGGGATCGCTCCAGTGA
CGTTTCACATGAAATAATTCGTCCCGCTCTGCAAAAAGATCAACCGCTCA
ACGTTTGACGCAACGCTATCGCCGTGGTGTGGATTGAGAATTTGAACACT
TGAGCGAGACCTCTTGTGCCCTATTGTATGTGGTTTCGGCTACAATCTCG
ACCGGCCACGTCTCGGACGTAATCTGGAAATTGGTTCGTTTGAAGGGAGG
AATGGACCCACAGTACGAGAATACTGGTGTGTACCACAAGACCACCCACC
TTGGGCACCCTGCCCTATTACTATTACTATACCGGGCATTTGTTACCGCT
CGAGATTAAAAATTGCGCTTTCTTACAGTTTTCGTGAACCGATTAGTCTA
CAGGATCAGCTTTCATAAATCGGTTTCAAATAAATCGAAACGGATAATAA
TGCTAGTTATAATAGAAAACGGGACTTCTTGGTGACCCCCCCCCCCCCCT
CAGCATTGCGTTATCCAATCACGCGACGGTTTCATATATTTTCTGCCTCG
TTCCACCATTATATTCTACTATTTTATTTTCAAAGGGTTAGGTTAAACGA
CAAGGACTGGCTCCGTTTCTCCCCCTCCTTTCCTTTTTATTTTTTATTTT
GTTGAGGTTTCTCTTTTTCATTTCCTTGCTACCTGATGATCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCTCCTGCCTATTAATAGTTTAGCTAGTGTA
CGAATGCGATGTGATATTATACCGTATATATTTTATAGGCTATGTTAGTC
ATTATCGGGAAGAGAGCAATCCAACGATAGGGGGGGGAGGGGATGTGCAT
AATATGTCCCCTTTCCCGTGGGGGGGGGGGGGGTGTCATCAAAAGAGCCC
CTCTCGGGGACATATTTCAACATGTTTTAACAAATCCCTCCTGGAATGAG
TTTAGACTGGGGCAAGCTTGTCCATCCGCTAACGGGATATTTTCTATCCC
ACAATCCGGAGGGGCCCTTTTGGTCAGATCCCCCATGCAATAGGGGATAT
TTTTCTCCCATCCCCTCTCCCCCCGTCGCCCCCTCTTCGTGTTTCGTATG
GTTTTGAGTCTTGACAAACCTCTGATAGGCTCTTCGTATCCTACGATATC
ATATCATAACTACAAATTAAAATTCAACCATTTGTTGACGAGTTGTAAGA
GTGCTGAACTTGCATCGCGAAAGAAAATTGCAAGGCGTGAACCGGGGAGA
GATGGGAAGATCCTTTGTGACCACAGGCAGGATGGGAATTAGAGGTCCAT
CGGCTATAAGTGTGATTAAAAAGAAAAAAAGAAAAAAAACTAATCACCGT
TGATTTACGATCGTATTTCGTCATCAAAAGGCCCCTCGAGAAGTAGAAGT
CGTGCATAAAAGGGGGGGGGGCTGCAAAGGTCGACCGCGGCCGGCTGGGG
AGGTATTTTCGGAGTTTTCTCGAGTTCCGAAAGAAGACTACGTGTATATA
AATATAATACTCCGTATAAAAATAACATGCAACATTTTGGAAAATGCCGC
TGCTGCCCCCCCCCCGCGCGCTCCCACTCTAAAACTCTAAAATAGATCAC
CTGGTAGTCCGTAGAAAACACTCTAGAATATACTAGAACATACTGTACCA
AACCATAGGGCCCCTCATCATTGACTCGACCCTGACCGACCTCCATTTGT
GGACCCCCCCGCCTTTGGGAACTTTTTTGTTTGTTTGCTTGGTTAAATGT
GGGACGGAATGGAACGGCATGGGACGACGCGGGGGATAAAACACCGAACG
GGATGTGGACGACATTTGACACATTGGGATGGATCGAAACGGGGGATGGG
ATGGTATGGCATGGCTTTTGGGGTCACCGGATCTCACGGGACCTTCAGCG
GAACTTCCTCCCAACCGCGTGGCTGAAATTTTGTTCAAGACGACCGGCAT
CCGCAAGACAGGGGACCAGTGCCGCACCCGGTGGACAAAGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig671:60670..63961+

>mRNA_F-serratus_M_contig671.17740.1 ID=mRNA_F-serratus_M_contig671.17740.1|Name=mRNA_F-serratus_M_contig671.17740.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig671:60670..63961+ (Fucus serratus male)
TCGTCCCCGGCCCAGGCGGCGCGGCATGCAAGGAACGGGACGAAGGTCAT
GCAAGCCTCTGGAGTCGTCCCCGGCCCAGGCGGCGCGGCATGCAAGGAAC
GGGACGAAGGTCATGCAAGCCTCTGGAGGCGTTCAGGCTGTGGGTATAGA
TAAACCGTCTCCCCAGCTGCGGCGATCACAGCAGCAGCAGCAGCAGGTGG
CGGTGGGAAAGGAGGAAATTGAGGAAGACCCATCGGGAGACAAGGAGTAC
CGCGCCACCAAGACGTGGTCCGTGGAGGAGCTGCAGCTGCTATGGGAGCT
CAAGACCAAGGACCGCGTTCAGGCTGTGGGTATAGATAAACCGTCTCCCC
AGCTGCGGCGATCACAGCAGCAGCAGCAGCAGGTGGCGGTGGGAAAGGAG
GAAATTGAGGAAGACCCATCGGGAGACAAGGAGTACCGCGCCACCAAGAC
GTGGTCCGTGGAGGAGCTGCAGCTGCTATGGGAGCTCAAGACCAAGGACC
CGGAACTTCCTCCCAACCGCGTGGCTGAAATTTTGTTCAAGACGACCGGC
ATCCGCAAGACAGGGGACCAGTGCCGCACCCGGTGGACAAAGCGGAACTT
CCTCCCAACCGCGTGGCTGAAATTTTGTTCAAGACGACCGGCATCCGCAA
GACAGGGGACCAGTGCCGCACCCGGTGGACAAAG
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