mRNA_F-serratus_M_contig6704.17738.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 213 bits (543), Expect = 5.200e-63 Identity = 135/245 (55.10%), Postives = 172/245 (70.20%), Query Frame = 1
Query: 55 VASFSSGSIWDEENDDFGPSNITGCRFDGNRATDGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVD-----MDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGSTAGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
+A FSSGS+ + GP N T C F+ N A DGGA Y+AAGYD+V + SF NFA + GGALLHSGVLV + XXXXXXXXXXXXXXXXXXXX AE + ++F N+F+C G+YG + + +DTCR+ VVCS C C+D +D +++ +P C V GVN++GN+G TL+TLDL SG++RTS++S + +C+REEAC GGSTAG YCA GY G YCAAC+EGY SG QYSC
Sbjct: 210 MAFFSSGSL-----EGSGPVNTTACVFERNSADDGGAFYSAAGYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSC 449
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.380e-52 Identity = 102/235 (43.40%), Postives = 144/235 (61.28%), Query Frame = 1
Query: 76 SIWDEENDDFGPSNITGCRFDGNRATDGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTG--VDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGSTAGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
S++D+++ G N T C F GN A DGGA+Y+AAGYD + + F N A GGA LHSGVLV L A I+ +F +N+++C SG+YG E +I + S TCR VVCS C C+D+ G V +++A +P+C+ GV+ +G+ G+TL L+L+ G++RTS++S+ V KCY+EEAC GG+ YC +GY G YCA CDEGY SG+Q+SC
Sbjct: 439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCA-ASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSC 672
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.040e-20 Identity = 96/261 (36.78%), Postives = 124/261 (47.51%), Query Frame = 1
Query: 4 SINNAVFTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNA-TIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGG--STAGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
+ ++ F N+ GG + F SG+ + P+ CRF N AT GGA+ +AAG D+V NS F N AEV GGAL +G XXXXXXX T++ SF N F C + LE D +D VC C C G D +P C V D TG +TLETL + G++R +S S+E+ CY +AC GG TAG YC + Y GPYC+ C +GY S YSC
Sbjct: 785 TFSDVSFISNFAQVGGAASVFGSGNDRGMLSPII-PTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEV-GGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLF-LEYDA-----TDNGTFEAVCDGCR-VACD---GCSFDEPPAVPTCSDVMDHGTSTGGK-VTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAG-YCLESYEGPYCSICSDGYASNLGYSC 1031
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.370e-20 Identity = 94/263 (35.74%), Postives = 124/263 (47.15%), Query Frame = 1
Query: 22 FTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGST-AGSYCAKGYAG----------PYCAACDEGYGSGFQYSC 774
F N GG V S SG+ ++F P TGC F GN AT GGA+ +AAG D+V NS+F N A Q XXXXXXXX + I A +F N CPSG + ++ V D D R S VCS C +C D D N+ +P C + PD TG+ T+ETL + G++R + SR + C+ +AC GG T A YCA+GY G P CA C +G+ ++C
Sbjct: 531 FDSNSAQIGGAVRSTGSGTTILATGEEF-PVTYTGCNFTGNWATASGGAMESAAGKDLVVNSTFLGNTAS-QXXXXXXXXXXXXXXXXXXXXXADEQGGPAIHNLGFMDGIEACTFADNDVVCPSGFF-----LDFV-DGD--RYSNVCSGCE--ECNDCDVAD--NSEVPTCTITPDHAQSTGS---TVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGYEGALKSVSCTREPDCAVCSDGFAESLSFTC 776
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.520e-20 Identity = 89/277 (32.13%), Postives = 122/277 (44.04%), Query Frame = 1
Query: 22 FTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFA------------------------EVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGST-AGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
F N GG V S SG+ ++F P TGC F GN AT GGAI +AAG D+V NS+F N A + QGG +H+ + I A +F N CPSG + ++ V D D R S VCS C +C D V D++ +P C + PD TGN T+ETL + G++R + SR + C+ +AC+GG T A YCA+GY CA C +G+ ++C
Sbjct: 595 FDSNSAQIGGAVRSTGSGTTVLATGEEF-PVTYTGCNFTGNWATASGGAIESAAGKDLVLNSTFLGNTAXXXXXXXXXXXXXXXXXXXXXXXXDEQGGPAIHN-------------------------LGYMDGIEACTFADNHVVCPSGFF-----LDFV-DGD--RYSNVCSGCE--ECNDC--VVADSSEVPTCTITPDHAQSTGN---TIETLSIDPGYWRATPSSRNILACHNADACSGGETGAADYCAEGYED--CAVCSDGFAESLSFTC 828
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 8.960e-20 Identity = 85/254 (33.46%), Postives = 109/254 (42.91%), Query Frame = 1
Query: 22 FTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNAT-IPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGSTAG-SYCAKGYAGPYCAACDEGYGSGFQYSC 774
FT N GG V S SSG + D P C F N A+ GGAI TAAGYD NS F N A V GGAL G + L + F N C +G Y + D R VC C P V ++N +P+C + D G T+ETL+L SG++R ++ S V CY E+AC GG T ++C +GY GPYC+ C EGY ++C
Sbjct: 1139 FTANRAPRGGAVYSVSSGIETNGGGDPLFPVGYKDCLFRDNEASVTGGAIETAAGYDFAINSVFEANAAGV-GGALRLGGSAI-LTNCTFIDNTAEDEGPAVSNLGVLDLEGTSRFSGNVLSCENGMY--------LDSVDGDRYQTVCDGC--PVNNSDWIVSVENGDRVPICVVQLDHTRSEGGD-TTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTC 1379
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 2.640e-18 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 73 GSIWDEEN-DDFGPSNITGCRFDGNRATDGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQD--HTGVDMDNATIPVCDLV 546
GS+W+ E+ DD GP+N T C F+ N A DGGAIY+AAGYD++++S F N A GA LHSG+LV+L XX F +N+++C SG+YG + + + S TCR VC+ C C + + V ++A +P+C+ V
Sbjct: 393 GSVWNVESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIAVGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYDISADEDEVSGTCRFDEVCTGCA-VSCAEIPESVVVANDAFVPMCETV 552
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 2.020e-17 Identity = 83/258 (32.17%), Postives = 111/258 (43.02%), Query Frame = 1
Query: 16 AVFTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITG---CRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGSTA-GSYCAKGYAGPYCAACDEGYGSGFQYSC 774
A F N GG V++ SG++ +EN D P N T C F NRAT GGAI +AAG D NS+F N A GG L +G ++ ++F N F C G Y L ++ C C + C G + P C V + + G + +TLE L + G++R S S EV CY +AC GG T YC KGY GPYCA C +GY + ++C
Sbjct: 618 ARFISNSAQVGGAVSTVGSGNL--KENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRL-AGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMY-------LDYNASGNPYEAACGGC-ETACD---GCFFEPPVPPTCTDVMEHITSAGGT-VTLEDLPVERGYWRASPSSEEVFACYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFAC 860
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 2.780e-17 Identity = 88/252 (34.92%), Postives = 117/252 (46.43%), Query Frame = 1
Query: 22 FTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRATDGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSGKYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGGST-AGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
F N GG V S SG+ D+F GA+ +AAG D+VANS+F N A XXXXXXXXXX E I A +F N CPSG + ++ V D R S VCS C +C D GV D++ +P C + PD TGN T+ETL + G++R + + + C+ +AC GG T A YCA+GY GPYCA C +G+ ++C
Sbjct: 692 FDSNSAQIGGAVRSTGSGTTILATGDEFPVXXXXXXXXXXXXXXXXGAMESAAGKDLVANSTFLGNTAXXX-XXXXXXXXXXXXXXXXXXXXXXEQGGPAIQNLGFMEGIEACTFADNDAVCPSGFF-----LDFV---DGHRYSDVCSGCE--ECSD-CGV-ADSSEVPTCTITPDHTQSTGN---TIETLSIDPGYWRATPSTIIILACHNSDACLGGETGAADYCAEGYEGPYCAVCSDGFAESLSFTC 927
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 9.420e-17 Identity = 83/228 (36.40%), Postives = 106/228 (46.49%), Query Frame = 1
Query: 109 PSNITGCRFDGNRAT-DGGAIYTAAGYDMVANSSFTRNFAEVQGGALLHSGVLVALXXXXXXXXXXXXXXXXXXXXXXAETISALSFRTNSFFCPSG---KYGLEEDIELVQDSDTCRMSVVCSLCNDPQCQDHTGVDMDNATIPVCDLVPDGVNITGNSGMTLETLDLMSGFFRTSSKSREVSKCYREEACTGG--STAGSYCAKGYAGPYCAACDEGYGSGFQYSC 774
P+ CRF N AT GGA+ +AAG D+V NS F N AEV GGAL XXXXXXX T++ SF N F C ++ D D CR V C C+ + +P C V D G + +TLETL + G++R +S S+++ CY +AC GG TAG YC + Y GPYC+ C GY S YSC
Sbjct: 879 PTKFNRCRFIDNVATASGGAVDSAAGQDIVVNSVFKGNSAEV-GGALRXXXXXXXXXXXXXXXVSGHQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGTFEAVCDGCR--VACDGCSFDE----------QPAVPTCSDVMDHSTSPGGN-VTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAG-YCLESYEGPYCSICSNGYASNLGYSC 1091 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6704.17738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6704.17738.1 >prot_F-serratus_M_contig6704.17738.1 ID=prot_F-serratus_M_contig6704.17738.1|Name=mRNA_F-serratus_M_contig6704.17738.1|organism=Fucus serratus male|type=polypeptide|length=258bp MSINNAVFTDNYGVWGGGVASFSSGSIWDEENDDFGPSNITGCRFDGNRAback to top mRNA from alignment at F-serratus_M_contig6704:16615..18441- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6704.17738.1 ID=mRNA_F-serratus_M_contig6704.17738.1|Name=mRNA_F-serratus_M_contig6704.17738.1|organism=Fucus serratus male|type=mRNA|length=1827bp|location=Sequence derived from alignment at F-serratus_M_contig6704:16615..18441- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6704:16615..18441- >mRNA_F-serratus_M_contig6704.17738.1 ID=mRNA_F-serratus_M_contig6704.17738.1|Name=mRNA_F-serratus_M_contig6704.17738.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig6704:16615..18441- (Fucus serratus male)back to top |