mRNA_F-serratus_M_contig67.17707.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig67.17707.1
Unique NamemRNA_F-serratus_M_contig67.17707.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A835Z8W8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W8_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.240e-48
Identity = 101/183 (55.19%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  166 HAAVIAVASGGIG-GSSAFLAPPTHSSSRIRTPAAARAAVTPLMAIPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEE----PKKLFGMF 699
             AA I+VA  G+   +S F+A P    +       ARA+ + L ++PLELEG+LD S+ WEVEL LDG TKKVTVPEGTSVL AA+ VFDDPP SC+NG+CTTCAG I EG   +S+ +AV  LG D  A G+TLTCQTYP GPGLKV LN+YD VY  QYG++E    ++     +K+FG+F
Sbjct:    2 RAACISVALAGLACQASGFIAAPATRVAGCTQ--CARASSSALRSVPLELEGKLDPSKSWEVELVLDGETKKVTVPEGTSVLEAAEMVFDDPPFSCRNGVCTTCAGFIEEGR--DSHLMAVHGLGRDILATGFTLTCQTYPTGPGLKVALNKYDEVYWEQYGKHEKSELDKRAAGERKVFGLF 180          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A6V1VDI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VDI3_HETAK)

HSP 1 Score: 175 bits (444), Expect = 1.710e-48
Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = 1
Query:  268 ARAAVTPL-MAIPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEEPKKLF 690
            AR+  TP+ M +PLELEG+LD S+ WE+EL LDGVTK VTV E   VL AA++VFDDPP SC+NG+CTTC+  I EG +GE+YKLAV  LG+   ++G+T++CQT+  GPG+K+ LNQYDTVYEMQYGQYE    ++ KK F
Sbjct:   25 ARSMRTPMRMGVPLELEGKLDPSKTWEIELTLDGVTKMVTVSEADCVLEAAEKVFDDPPFSCRNGVCTTCSCRIVEGKEGENYKLAVHGLGETALSQGFTMSCQTHVTGPGVKIELNQYDTVYEMQYGQYEKGTAKDTKKSF 166          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A835Z7P0_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.980e-41
Identity = 94/186 (50.54%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  157 MKTHAAVIAVASGGIGGSSAFLAPPTHSSSRIRTPAAARAAVTPLMAIPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEEPK-----KLFGMF 699
            M+  AAV A    G    SAFL  PT           AR   T   A+P ELE +LD +R WEVEL L+G TK VT+PEGTSVL AA+ VFDDPP SC+NG+C+TCAG I  G    S + AV  LG D   +GY LTCQTYP GPG+KV LN+ D VY  QYG++  + +E        K+FGMF
Sbjct:    1 MRAAAAVAAAMLAGQA--SAFLMAPTL----------ARNTATVRSAMPQELETELDPARTWEVELTLNGETKVVTIPEGTSVLEAAELVFDDPPNSCRNGVCSTCAGHIDGGAN--SVRYAVSGLGQDLLGEGYALTCQTYPAGPGVKVSLNKMDEVYMQQYGKHSEEEQERKMSGGKTKVFGMF 172          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.340e-40
Identity = 74/140 (52.86%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  280 VTPLMAIPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEEPKKLFGMF 699
            V  L  +P+ELEGQL+ + +W+V +  +G TK +TVPE  ++L A++ +F D PCSC+NGICTTCA ++  G   ES  LAV  L  +QR KGYTL CQ+Y  GPGLKV L +YD VYE QYG+YE   +EE KK  G+F
Sbjct:    3 VKSLNVVPVELEGQLNPANKWDVSITFNGETKVITVPEDQNILEASEELFGDVPCSCRNGICTTCAAMVTGGE--ESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYERNQQEEKKKFLGIF 140          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC)

HSP 1 Score: 150 bits (379), Expect = 1.150e-39
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 1
Query:  298 IPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYE 657
            +P++LEG+LD SR W +EL  DG  + V VPEGTSVL AA+ V++DPPC C+NG+CT+CAG I  G  GE+Y +  D+L +  + KGY LTCQTY CGPGLKV LN+ + VY MQYG++E
Sbjct:    6 VPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A4D9D4I2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4I2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.990e-37
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  211 SAFLAP--PTHSSSRIRTPAAARAAVTPLMAIPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEE--PKKLFGMF 699
            S FL P  P+ + S  R P          + +P +LEG+LD  R W+V + L+G TK V+V EGTS+L AA+  F DPPC C+NG+CTTCA  +  G  G S+  A+++L  +Q+  G+ L+CQTYPCGPGL+V LN  + VYE QY +YE K  EE   KK F +F
Sbjct:   16 SGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHG-SWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYETKAHEELEKKKGFNIF 181          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.820e-36
Identity = 71/134 (52.99%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  298 IPLELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYEVKVEEEPKKLFGMF 699
            +PLELEGQLD ++ W+V++   G TK +TV E T +L AA++ +D  PCSC+NGICTTCAG +      +S K A+  L  +Q   G+ LTCQT+PCGPGL+V L  YDTVYE QYGQYE K   E K  F +F
Sbjct:   41 VPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWD-VPCSCRNGICTTCAGRVIANP--DSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVF 171          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A6P0WYJ5_9CYAN (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Caldora sp. SIO3E6 TaxID=2607806 RepID=A0A6P0WYJ5_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 3.880e-15
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  340 WEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQ 651
            + VE++  G T KV VPEG  +L  A     D P SC  G+CTTCA  I EGT  +S  +    L  D +A+GY L C  YP    LK+   + D VY+ Q+GQ
Sbjct:    5 YTVEIQHQGTTHKVEVPEGNKILETAHNAGIDSPSSCHAGVCTTCAAKILEGTVDQSEGMG---LSPDLQAEGYVLLCVAYPTS-NLKIETEKEDEVYDRQFGQ 104          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: UPI00168A165A (2Fe-2S iron-sulfur cluster-binding protein n=1 Tax=unclassified Planktothrix TaxID=2648599 RepID=UPI00168A165A)

HSP 1 Score: 76.6 bits (187), Expect = 2.280e-13
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  328 VSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYE 657
            +S+   VE++  G T  + VPE   +L AA+    D P SC  G+CTTCAG I  G   +S  + V     + +AKGY L C  YP    LK++  + D VY +Q+GQY+
Sbjct:    1 MSKTHTVEIQHQGKTYTLQVPEDVKILNAAQAAGIDLPNSCNAGVCTTCAGQILAGEVDQSDGMGVSP---ELKAKGYVLLCVAYPRSD-LKIVSEKEDEVYHLQFGQYQ 106          
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Match: A0A2T1DE77_9CYAN (Ferredoxin n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1DE77_9CYAN)

HSP 1 Score: 76.3 bits (186), Expect = 3.660e-13
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  328 VSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQNGICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKVLLNQYDTVYEMQYGQYE 657
            +S  + VEL+  G T  ++VPE  ++L AA+    D P SC  G+CTTCA  I +G+  ++  + V     + + KGY L C  YP    LK+   + DTVY++Q+GQ++
Sbjct:    1 MSNTYTVELQHQGTTHTLSVPETETILSAAQAAGLDLPYSCSAGVCTTCAAQILDGSVDQTDGMGVSP---ELQEKGYVLLCVAYPRSD-LKIETEKEDTVYQLQFGQFQ 106          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig67.17707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8W8_9STRA1.240e-4855.192Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6V1VDI3_HETAK1.710e-4860.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z7P0_9STRA5.980e-4150.542Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2XX00_9STRA4.340e-4052.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4EXA3_VITBC1.150e-3957.502Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9D4I2_9STRA2.990e-3746.712Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9D796_9STRA5.820e-3652.992Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6P0WYJ5_9CYAN3.880e-1542.312Fe-2S iron-sulfur cluster binding domain-containi... [more]
UPI00168A165A2.280e-1339.092Fe-2S iron-sulfur cluster-binding protein n=1 Tax... [more]
A0A2T1DE77_9CYAN3.660e-1337.27Ferredoxin n=1 Tax=filamentous cyanobacterium CCP2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig67contigF-serratus_M_contig67:55810..66303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog166318.Syn8016DRAFT_2184
Preferred namepetF1
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Ferredoxin
EggNOG OGs1G6QX@1117,1H0PQ@1129,COG1018@1,COG1018@2
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-06_010720.1
COG Functional cat.C
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons5
Model size1698
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932052.1867137-UTR-F-serratus_M_contig67:55809..559651622932052.1867137-UTR-F-serratus_M_contig67:55809..55965Fucus serratus maleUTRF-serratus_M_contig67 55810..55965 +
1690964121.6244733-UTR-F-serratus_M_contig67:55809..559651690964121.6244733-UTR-F-serratus_M_contig67:55809..55965Fucus serratus maleUTRF-serratus_M_contig67 55810..55965 +
1622932052.2822087-UTR-F-serratus_M_contig67:65307..663031622932052.2822087-UTR-F-serratus_M_contig67:65307..66303Fucus serratus maleUTRF-serratus_M_contig67 65308..66303 +
1690964121.6930296-UTR-F-serratus_M_contig67:65307..663031690964121.6930296-UTR-F-serratus_M_contig67:65307..66303Fucus serratus maleUTRF-serratus_M_contig67 65308..66303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932052.2050772-CDS-F-serratus_M_contig67:55965..560631622932052.2050772-CDS-F-serratus_M_contig67:55965..56063Fucus serratus maleCDSF-serratus_M_contig67 55966..56063 +
1690964121.6400628-CDS-F-serratus_M_contig67:55965..560631690964121.6400628-CDS-F-serratus_M_contig67:55965..56063Fucus serratus maleCDSF-serratus_M_contig67 55966..56063 +
1622932052.2222745-CDS-F-serratus_M_contig67:62910..630071622932052.2222745-CDS-F-serratus_M_contig67:62910..63007Fucus serratus maleCDSF-serratus_M_contig67 62911..63007 +
1690964121.6525164-CDS-F-serratus_M_contig67:62910..630071690964121.6525164-CDS-F-serratus_M_contig67:62910..63007Fucus serratus maleCDSF-serratus_M_contig67 62911..63007 +
1622932052.2370605-CDS-F-serratus_M_contig67:64040..641121622932052.2370605-CDS-F-serratus_M_contig67:64040..64112Fucus serratus maleCDSF-serratus_M_contig67 64041..64112 +
1690964121.6616151-CDS-F-serratus_M_contig67:64040..641121690964121.6616151-CDS-F-serratus_M_contig67:64040..64112Fucus serratus maleCDSF-serratus_M_contig67 64041..64112 +
1622932052.2558804-CDS-F-serratus_M_contig67:64519..646511622932052.2558804-CDS-F-serratus_M_contig67:64519..64651Fucus serratus maleCDSF-serratus_M_contig67 64520..64651 +
1690964121.6722727-CDS-F-serratus_M_contig67:64519..646511690964121.6722727-CDS-F-serratus_M_contig67:64519..64651Fucus serratus maleCDSF-serratus_M_contig67 64520..64651 +
1622932052.2683985-CDS-F-serratus_M_contig67:65160..653071622932052.2683985-CDS-F-serratus_M_contig67:65160..65307Fucus serratus maleCDSF-serratus_M_contig67 65161..65307 +
1690964121.6826417-CDS-F-serratus_M_contig67:65160..653071690964121.6826417-CDS-F-serratus_M_contig67:65160..65307Fucus serratus maleCDSF-serratus_M_contig67 65161..65307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig67.17707.1prot_F-serratus_M_contig67.17707.1Fucus serratus malepolypeptideF-serratus_M_contig67 55966..65307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig67.17707.1

>prot_F-serratus_M_contig67.17707.1 ID=prot_F-serratus_M_contig67.17707.1|Name=mRNA_F-serratus_M_contig67.17707.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MKTHAAVIAVASGGIGGSSAFLAPPTHSSSRIRTPAAARAAVTPLMAIPL
ELEGQLDVSREWEVELELDGVTKKVTVPEGTSVLYAAKRVFDDPPCSCQN
GICTTCAGLIREGTKGESYKLAVDALGDDQRAKGYTLTCQTYPCGPGLKV
LLNQYDTVYEMQYGQYEVKVEEEPKKLFGMF*
back to top

mRNA from alignment at F-serratus_M_contig67:55810..66303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig67.17707.1 ID=mRNA_F-serratus_M_contig67.17707.1|Name=mRNA_F-serratus_M_contig67.17707.1|organism=Fucus serratus male|type=mRNA|length=10494bp|location=Sequence derived from alignment at F-serratus_M_contig67:55810..66303+ (Fucus serratus male)
GTTGTTTGTCTGTACTGCTGTAGACAAATTGTCGTCTAGTGTTCACAGAA CCAGTGGGGAACAGCTTTACGCTTGGCCGTAAGACGAGAAACTTGTGCAA GAGAGGGAGGCACAGAAAGGATACTTGGAGCGTGGGCCTAGGTAGAGTGG TCTATCATGAAAACGCATGCCGCTGTAATCGCTGTAGCGTCGGGAGGGAT AGGCGGCTCCAGCGCCTTCCTAGCTCCTCCGACTCACAGCTCTTCCAGGA TCAGGTGGGCACTCATCACTTTCATAGCTTTTATCTTTGGGATCCGTGCT TTCCCGCTTATCATTCGGCGTCGAGAACATCGTAGATTGCCGCAGATGTC CGAGCTATGATTGAAATATAACATCCATCCTTCTCGCCTTCATGTTCCGA CCGCTTATATGCACACGATCATATACTGTACCACTGTGTACTCTGTCTTA ATAGTTGATGTTACTTTCAAAGATGTCATGTTGTGCTTCCTGTACACACA GTATCATATCGACGTTTTGTCAGGTACGATAGTATTTCGTCGTGGTGCCC GCGTCTCCAGCGGTCAGTTCAGCGTCCGTGGTGCATGTAATGATGTAATC ATGCCTTGGTCCTACTCTATCCATATCAACAGCAGTAGATTGTATTCTCC CTGCCCAACCATTTGCAGTATTTTGCACCGATTTCTTCGCGGTGGATTTG AGTTCAACGTCCTTCCTTTTCCTTGCCATCCAGAAGACAGCCCAGCTCAA ACATGGATAGAGAATAGTGCCCAAGAAAGCCTGTGAGCGATGGGGTAGCG GTTCCTTTTGCTGTGCGGGACAAACCAAAACTATCCTCCGGCCCCAATGG ACACCGCGCCTGCTTGCTTACACGAAACCTGAGCATTTTCTGCTCTCCAA ACTGATGTCGAAATCTATTCAACAGTATGGATGAGTATGTATGGTCATCA CATATAGCAGAGTACCAGTATTTCATGGATCAACCAGAGAAAATCTGAAC GCATCTAAACCTTCTGATCAGTCAAAAGGTTTAGGCGGGTTGTCAATCCT GCTCGTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTACG TGCCTGAGAATTTACGGGATTCCCCCCGATTTCCGCGAGAGCATCCATTT ATTTATTTTAACCGCCATACTCCATTGAGTCAGTGCTGAGTTTATCGGGT CACACAATTGCGTACCAATGGCGTTGACGTGTACTTTATAGTCTTGCGAA ATACAGCATAGAGCTATTGCATTACCTATTATAGTATAGGTACGTTACCA GTAGTACACAGCAAGTGTGCTTGTGCTGTCACACACCGATCGGGCCTCAT CTATACTAGTACTGTATTATGTATATATGTATAGCAACACATATGGCAAG AGCCTGGTCCAACCGGGTAAGGTTGCCAATCCTGCTCATGGTCAACTGAA CAGGGAATATTCATATGAATATTTCCCTGTCCCCGTACGCGCCTGAGAAT TTGGTCTCGCGAGACGGGTTCGGCTGTCCCGTCGCGCGTCGTCAGCCTGC TCATCTCCATACTCAGGCTGAATGCAATATACGCGGTTGCCAATCTGGTA CCAGGTACGTGATAGATGAAAGGGGCATCTACAAAGCTCCGCTTCTGCGA GAGGATATGAAAAAAAAAAAAAAAATCAGAACGAAAGAAAAGGAAGGAGA AAAAATGACAGATAGACCGCAAAAAGGAGCAGGGAACCAATGGAACCAAT GGAACCAATAACTAAAGCAGATGCGTGGTGCATACATAAGGTACATAAGG TACATACGCGCGCGCAAAACGAAGCGGGGCACTCCCTTGGGAGGGTTTTG TTTAGTGCCAACCACAAGCGTATCCAATGTCCCCTCCGGATCGCAACTAC CTCGTATTTGCAGACAAAGGCATACCAGGTAACATAAATACTTGGTACAT ACAAGTCAGACAAAACCCTCAGGGTTCTCAGGCTTTCCTATCGGCGCAGC CATCGCCGCTTCGGGAGTCCTTGGGGTCGACCCAATCAACGCGACTCTGA GACGTCTCAAGCTTCCCACGGCCACCCCAGGCACGACCTCAGTTCCTGTC CGCCTCTTCCGCCTCTCTATTTATCTCCTCTTCCTCTGCCGGTCTGCCGG TTTTTGGACCTATTTCCCTCTTCCCTCACCCACGCGAACATCAACCTGCA ACCCCTTCGCAAACTGTGTTAACAGCGTTCCAATCCTTAGGGTCTAATAA TATTAATACTATAGTTCGGCGGTACTTCAGTCCCCCGTGATGCCAAGCAC AGCCGACGATCGTCTGCCACGCAGTCCGTCCATTCCTTCTCCCCGCGTCG TCCCGCCTTCCAGCTCCCCCGGCATGATCCTCTAGGGTAATGTGTGGGTC ACCCGTGCGGAGCAGCGCCCCCGCCCACAAAAAAACTCCTCGTGCGCATG GTTGCTTCGTTGGAGGGCGTCTTTGTAGGAGAGGATGCTCTTGTCCGGCG ACTTGCACCAGGCTCCCAAGATTCAAAGCAGCACCCTGTGGTGTAGATGG AGTACGAGCATTGTTGCAGTCATCCATAAGTGGGGCCCACATCACGCATC CGTAGTAGGAGAGCCTATACTACCCCGGAGTTCACTATCCGAACCTTCAC GTGCAGCAAACTTGGCTTCGGGCGATCGTATAGTTGTCGCTTGTAACGCC TGAAGGCTATCCACTCCGCACGGATCCGCCGGCCAATCTCGGCCGACAGG TATGGGGTTTCAGAGACGATGCCCTCCAAATAGGTGCAAGTAGGTTGTCT GGCGGCACTATTGTCCCGTAGCGTTAAAGACAACATGTGTTGTCGGCGCA CGCACAGTCGATATGCACATGGTTTCCGTGTTGCTCTCTGAGATGGTTGC TCCAAACGCGCCAAAGACTCCGACAAAGACCGCCATCTCATCCGATCCAA CCCGCGCGGCAACTGTGGCATGATAAACGCGTCGTCAGCATACAGCGTCC CCTAGATACCTCTATGCTCACATGTCAGTGCCCTTTCATTTTAGGGTCAA CCTTCAACAGCCCCTCTTGAAGATAGGAAAGGACTGCGAGTATGTCCGCG TCCTTGCTGAGTCGCTTTAGTTCTACCAGGAGTATCGCAGCGTAGAAGAC GTTGAACAGCAGTGGGGAAAGCACGCTTCTCTGACGCAGCCCTTGTACAA CCCCGAACCACTCCGAGCCTAGAACATCGTCATTACGCACGTAAGCTCTT TATGCCATCGTGGAGTTGGTGGATTACTGTATTCTGCGGTGGAACTCCGA AGCGGCCGAGCACCTGCCAAAAAAATGTGCGGTCCACAGAGTCGTAGGCG TTTCTGCAAATCGATAAAATGCAGGAACAGCCGTACGCGCGCTTTCCATC CCAACTCTTTCAGCCTGCGCCCCGCCAACATCATATCGGCCGTCGACCGG TTGGGGTGGAACACGCACTACTCCTCCGGCAGCTGTCACTTATCCTCGCA GTAGGCGCTGAGTCTCGTAGCGATTAACTTGAGAAGAGCCTTACCCGCGA GCACTACGAGTGAGATTTGTAGATAGTTCCCGCGCACGCTAGTGTCCCTT GTCATTTCGTCATCTCAACACCGATGCCGTACCTTCCGTTGGTGCCACAC CAGCGTGATCACCCAGTGAAACTCCTGGAGTGCGGTCGGGACATGGTTCG GCCCGTGTTTGAGGAGTTCAGCTGGGAGTCCATCTGGTCCCACTGCCTTT GCGTTCGTCGCGACCCCAAGGCTGCGGTTACTTGGTTTGCTATCGGCTGC TCGACCCGAGGGCGTGTGCGACAGGCCGCTGAGAAAGCCCTTGGATCGTG TCGGGTTTGAGCTTTTCAGATTTCGTGTTGAGAAGGGCACCGAAGAACCG CGCCCACATTCCGAGAATGATCCCTAGGTCGGGTAACATCATTCCCTCTT CATCACGGATGTACTTCGAAGTAACCTTCCGCATGTCTTATATGCTCAGG GACTTGAGGCTCTGGGAGGGTCTTTAGTGATCGCGCTGGCGCAACTCCTC CAGACCCTGAACGTGTTTCTCAAGGAGGCCTTGCGTATGCAGCGTCGCAA ACCCTCTGCACATGCGTGTCAGTCTTCTGCCGCTTCCACGCCGCTCGTCT CGCGACCGTCGCTATGTCGAGCTCTGCTTCTTCATAAGCATCGCCCCTCC ATCCCCGCCCCGGTAAGCCTGCGCTCTTGCGGCGTTGCAAACAGCTCTGC TATCTGCAGTACGGCTGTTGCAAAGGCAGCCTCCACATCACCCTCGCTGC TGCCGCTGTCTCGGGCTTAGGGGTACCGCCATGAGATGGTCCACGTTCAC TGTCGCTGCTTCCTGGCGCAGAAGGAGATCAGCCGTCGCCGGTCGATCGG TGGCGGTATACATATTTTGTACAAGTACTATTACCTTTGCGTTGTATGGT ACAATACTTGTCGAAGAGAGGCCTCTGTTACCTGCGACGCCCTCGGTGCT TTTGTCGGTTGTCCTTCACTTTCAACTTTCAACATTCAACATGCTACCTA TATAACCACTTCATACCAGTAATGGGTGTGGGAAAGAAAGGCGCATATTG ATTGGTTCATGGTGACCTGCCAAGGCGGCACTCGCTCGGAACTACCTTGA GGTTTACTGGCCCTGTGCCGGCGAACTCTCGCGCAGCAGTGAACGACATC GGAGCGCAATTGCGTGACCAATAAACTCGGTACTGACCCGATGGCGTTTG GCGGTTTTCAATAAATAAGTAACGCCGCCGCGGAACTCGGGAAGAATCCC GTAAGTAAGCACCAGATTCAGCTTGAGCGTGGAGATGAGGCTGGCGCGGG ACGGGACTGCGGAACCCGTCTCGCGAGACCAATTCTCAGGTGCGAACGCG GACAGGGAAATATCAATTTTCTGTGTTCAGCTGACCACGAGCAGAATTGG TAACCTTACCCAGTTGATCTATACTCTTGCTATATGTGTGACATATTCAC TCTATGAATATCAATACAATGTACAAGTAGTGTTATTAATAGTATAAATA ATAGTAGTGGGTGTGAGAAAAAAAGCCGCACATTGATTGGTCCGTGGAGT TACCTGATTGAGCAGCACCCGTTAGTCAATCTACCTTGAGAACTGCTGAC CCTGTTCTGCCGGACTGTCAGCGGTGGACGCGATCGGGACGCAATTGCGT GACCTGATAAATTCGGTAATAACCCTCTATGGTGGCGGTTGACGGTGTAG ATAGATGCCTCAGTCGCGGAAAGCGAGAGGAAGGAGAAGAGCCCGTGAGT AACCATCAGATTCAGCCTGGGTGTGGATAATAAACGGGCTGACGCGGGAC GGGACAGCCGAACCTCTTTCGCGAGACTAACATTTCAGGCGCGACCGGGG ACAAGGTGAAAACAGTCGCTCACCACTAGCGGAGTTGGTGACCATACCCC GACTGATGCACAATTTGCTAGATTTAATGATACATACATGGTTATTGTCT GTAGATGGTTCCAATCGGAAGACGGTCGGTCACCCGACGAAAAGGGGGGA AGACGGCTCTACACTAATACCAGTATATTAATAATTGCTGTAGAGGTAGC TCCGACCAAATCGGGTGTAGGCTGGAAGAGCAGGGCTGGAAACCCATCGT CTGCGATGCCAATGCCACGACTCGAGCGCCCTTGCAGGAGGCGTTTCCAA TGTCTGTCGACTTTTCAAACCGACCGAAGCGCAGAACATCTGAAGGTTTG TCACCGAAGGACACGATTCAGTTTCTGGTGCCCTCTCCTTCCGAAACCTG GTTTCGGGGTATAAATGGGGGAGGGTATTTCCGGCGGGTGAAGGGCTGGG CTCACCCTCAAGAGATGCAGCCAACTGGCTGCCTTTGCGGTTCAGCCTGT CGGTTGAGATGCGGCGGCGGTATGGTTGGCTGAGGATGGTGTTCCCAGGT GCGCGCCTCTTCCGAGTTCCAATTTGGTGTCCTTCGGGAGGGTGGCGGCA CGCGAGAGGCAGGGAACACTGTCGCGGAGAGCCTGGTAGTGCTCTATCGG GTGGGTACGCACCAGATTCGGTGAAGGCGGAGGGCAGCTCGATCGTCGAC GAGCCAGGGGAGTGCTGAACCCTTGTGCGCGAGAATCACAGACTTGAACC GGGAGGTTTCCGAGGGAAAAGCTGATATCTGACCACGGTCATTTTTCTTC CTAGGGTCACGAGGAGCGGCGAACGGGCAAGATCCGTGGGGCTTTTACAA AGATGCACGGGGCTTTGGACGGCTGGATGCTGGCTCGCGCGCCGGCTTCC CAGCTCAAGGCCCCCACCACCATGGACCTCGGTATTTCAATTTTCCTTAT TTTTGTACAATGTGTGGCCTCGAGAAACTTGGACTCGTTGATCAAAACTG GTTGGAGCGTAATTTTTCCGATTTTTTGCTGAGAACGCTGGTCGTGAGTA GGCGACAACAATCCGAGTCGATCGAGGTTGCTCGCTATATGGAGTAAGGA GGTTTGATCGACCCTTTTGACATTGGTCGGTGCCATTGCTTGTAGAGCCG CATAACGTTTTGTCACGATCTGGATCCCTGTTGGTCTGAGTAGCGGGTTG TCACCACGATGTGACCCGTTAACCTTCTTGCCTCTTTGAGACCAAGCTGG GTTGACATTTGATAGGTCATAGCCTATGGCTGACGTGTTGTGTCACCGTA TTTTTTTCAGTTGCAAGGACAATACGCTGAATGTGTGAATCAACAACAAC ATGTGATCAGACGTGTGACGTTAATCATGTTATGGATGTATGTGCGTCTG AGGCTAGACTTCAATCGTGTTCGCATGTGGCTGCGAACAACCATGTATCG GACCGCTACCACAGCAGCTACAGCGCAGTTCTCGTTATTTTTTGCCCACA GATTCCCGAGTTTCGCGTATTATCTATTAATAGGCTATAATATATACAAC AGTAGACGACGGGTGCAGAGCCCACTGTAGTTCCATTTTCGTTAACATAA GAGTAAACTATGTATCAAGTGCAAGTGCAAGTGCATTTGTATACTGTCTT CTGTCTCAAGGCCACTCTTTGTGTACTGTATTTGCGTTGCGCCGTCGGTA GGACACCTGCTGCGGCGCGTGCGGCGGTAACCCCGTTGATGGCCATCCCG CTCGAGCTTGAAGGGCAACTCGACGTCTCCAGAGAATGGGAAGTGGAGGT GCGTCCTCGTGGAACAGGGGTGGGAAGGATGGGTCGCAATCGATCGAATA GTTATATATTACAGAATGCATAGTGCATACAGTAGACCCTGTAGACTATA TTACGATACCGTGTCCTCTTGTTGGAGTTAATACTGTTAATAGTATGCTG GTCGCCTCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACACGTTGGAAC GTGAGTTCGATCCCGGCAAACGGTATTTTTCTCACTAAAAACCTAAAAAA CTAAAATAAAAATGTCCAACGGGTGGAGAACGATTAATTCGTTAGTACAC AAAATTCGACTTCACGGTCGACGAGTGAAAGGAATGGCTGAATCCTTTTC GCGATAAAAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCC TGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCATTGATGTCC AGAATGGGTGGGAAGAAAACACACAAAACACATGTGTTGGAAGCAGTACT TACACAGCAGTGTCAAGACACTTTTTTCTGCGGCATGTAGGCTAGAGCTA TTTCACTCTGAACAGTGTGCAGCGTCGAGCCGCTCCTCAACCTGAAAGGT GCCCGCGGAACAGCAAAGCAAATGTCACCTTCGCCTGCCTCATATTAATA GGCACTTGTGTCACGTGATCGACTCTCCGTCGAGGCTCCAGGGGAGAGTG AGCCTTCCGTGGTAGACATGGACGCCGGCTGCTGATGATCTCGCGAGATG TGGGCAAAGTTACAGCAGTAGAGCTACAACATAAAAAAAAAGTGACATGT GCACTGCAGACCGCCCCCGTCCTGGCCACGTACGTTGCGCCCGTTGGGCA TGTGCGCTACTTTTTCTGTCGTCGTCGTCCGATGCCCCCCCCCCTGTAAA AAGAGAAAAATGATGCGTTTGCGGGGGAGGGACGGGAGCGATACAGGGGA CAACCGACCTAAAGTTTTGCTCTGGTTGGCCGCTATCATGCAAATATTGA CGCATTTGTTCTCGTTCGATTCTCCGCGCAGCTGGAGCTCGACGGAGTGA CGAAAAAGGTCACAGTTCCGGAGGGTACTTCCGTCCTGTACGCCGCGAAG CGGGTAAGCTTCTCGCAGTGCGAATTGTTTCTCGATCTGTTGTTGTACGC CTCCAACTTTAACGGTTGTTTTTCTTGAGGTTTTCAACAGATCGCGCGGC ATTTCCTCCGCACAAACGGTCACCTTTCGATAAATGCACGGGTTGGGTTC CCCGTTCGAAACAGGACAGTGCGCAGTAACGTCGTACTTCTGTTGTAGGT TGATTACTGTCAAGCTCAATCGTTCTGGCCGTTTTGACCACATCTTCCTC GCCTACTCTTGTTTACCTCCGAAAAAAGGCTGCCTCGCTGCACTGTAGCT TTTACGCACTTTGACCCTACGAGCTCGTGCGAAAATGGCCGCTGCACGAA AAAGCTCCGACGCAACCGCCTGACCACCGTGCGGTGCTCTCCCTTGTCCG TGCCCCTCAGGTTTTCGACGACCCTCCATGCTCGTGCCAAAACGGTATCT GCACGACGTGCGCCGGGCTTATACGGGAGGGAACGAAAGGCGAGAGCTAC AAGCTGGCCGTGGATGCCTTGGGAGACGATCAGCGAGCGAAGGTGTGAAT GTCACCAATCCACCACGGCGTCTCATTTACGGAAAAATGACAACCTGTGT TATGTTATGTTATGTTATGTTATGTTGATATTTTGTCCCCTTTCCCCTGT CTTTCCGTGTCTGGGTGTTTTGGGTAGCGCAGCAGCGGCGGCGGCGGGAT GGTTGGAAATGTGCGTGAGGGGGCAGGCTGTGCGAAGTGCCTTTTCACTG TGTAACTTCATGAACCATGACCGATTTTCAATATATCATAGCTCTTTGGA TCTTCCCTAACCCCCTCCATTCCTCTGACCTCGTCCATCCTCCGGCTCTT ACGATAAACTGCCGTCGCTTCCCCGCACCGGTGACGTGTGGCGACCCGCC GGATGCCTCGCACTTTCATTTCCGCGGTCAATAATTTGTCTCGTTCTAGC CCGTACAACTTATTAGCATAACACCCTAGTCGTCAGCCCCTCGATCGTTT CTGCCTCCCATCCTCATTAGGAAACCCCTCCCCTCCCTCCGTCCGACCCA GGGATATACTCTCACTTGCCAAACGTACCCGTGCGGGCCGGGACTGAAAG TGCTGTTGAACCAATATGACACGGTCTACGAGATGCAGTACGGCCAATAC GAGGTCAAGGTGGAGGAGGAGCCCAAGAAATTGTTCGGGATGTTTTGAGA GAAAAAAAAGACACGGAACCACCTTGCGTTTTTCCTCGCGGCCGTAGGCG CAAGCGATGCCAGTTCTCTCTCCAGTATTTCGCTGCCTTTATTCCGTTGT TATTGTTGGCAAGAGGAATCGCGAGCTAGGACCCAGTACTGTTGTCAGTG GGTCGCGCCTGCGGGTACTCTTGAAGGAGTTCGATGCGTCACTGACAGGT TAAGAAAATGTGCGGCTGAGTTCAGGGTTTTTGTCTTCGAGGTTTTACTG GGAGGGTCGTCTCTCAACCTTACTGCATCCTTTCATCGTCGGTGGAGAGG GTGCCTCTGATGAAAATCTCTGATGACCATGGAGAGGGTGGCGGTTTGGA AGTCGATCGACAGTAGTCACCGCGTTAAGCTGACGAGGGATAAAGGAGCC ATGATTGAGAAAACGTTTTCGAACTCGATCGACCGAGCGGGGCTCGGAAA TGAATGTGTGTTGATGTTCCCGAGTTAACTACGCGTATACAGAGCCGGAC ATCAAACGGTCCGCCCACTTTTGCCCTCAAGCGTCCAAGTCATAGTGATC AAGTAAAGTATAGTAATATGCATGTATGGTCATCACATATGGCAGAGTAT GGATCAACCGTGTAAGATTGCCATTATTCCTGCTCGGGGTCAGTCAAGCT TGAAAACCAACCGACAACAATCAAGCATCTGTACGAGGAAACGACACGAT TGTAAGACGGGCTGCAGCTGGCGAACCACCGCTAGAGATAAGGACAAAAA TCGTATCCATTTCGCACAAGGGGTCTCATCTCCTTACGCCTCAGGGATGA GACGCGCGGCAACGGGTTCCGACACCAGCAACAAATAGCGCTCGATATTT TTTCGGCGGATGAATTGCCACCAAGGGTTCATCACGCTAAGGACGTGGAC GCTTTTACCTGGAGCGCGCGTTCGGGATCTACATCGCCAAAAGCCGCTGC TACACAGATAACGGGAGTCGCTGTACGATGCCCAACTCCTGGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig67:55810..66303+

>mRNA_F-serratus_M_contig67.17707.1 ID=mRNA_F-serratus_M_contig67.17707.1|Name=mRNA_F-serratus_M_contig67.17707.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig67:55810..66303+ (Fucus serratus male)
ATGAAAACGCATGCCGCTGTAATCGCTGTAGCGTCGGGAGGGATAGGCGG
CTCCAGCGCCTTCCTAGCTCCTCCGACTCACAGCTCTTCCAGGATCAGAT
GAAAACGCATGCCGCTGTAATCGCTGTAGCGTCGGGAGGGATAGGCGGCT
CCAGCGCCTTCCTAGCTCCTCCGACTCACAGCTCTTCCAGGATCAGGACA
CCTGCTGCGGCGCGTGCGGCGGTAACCCCGTTGATGGCCATCCCGCTCGA
GCTTGAAGGGCAACTCGACGTCTCCAGAGAATGGGAAGTGGAGGACACCT
GCTGCGGCGCGTGCGGCGGTAACCCCGTTGATGGCCATCCCGCTCGAGCT
TGAAGGGCAACTCGACGTCTCCAGAGAATGGGAAGTGGAGCTGGAGCTCG
ACGGAGTGACGAAAAAGGTCACAGTTCCGGAGGGTACTTCCGTCCTGTAC
GCCGCGAAGCGGCTGGAGCTCGACGGAGTGACGAAAAAGGTCACAGTTCC
GGAGGGTACTTCCGTCCTGTACGCCGCGAAGCGGGTTTTCGACGACCCTC
CATGCTCGTGCCAAAACGGTATCTGCACGACGTGCGCCGGGCTTATACGG
GAGGGAACGAAAGGCGAGAGCTACAAGCTGGCCGTGGATGCCTTGGGAGA
CGATCAGCGAGCGAAGGTTTTCGACGACCCTCCATGCTCGTGCCAAAACG
GTATCTGCACGACGTGCGCCGGGCTTATACGGGAGGGAACGAAAGGCGAG
AGCTACAAGCTGGCCGTGGATGCCTTGGGAGACGATCAGCGAGCGAAGGG
ATATACTCTCACTTGCCAAACGTACCCGTGCGGGCCGGGACTGAAAGTGC
TGTTGAACCAATATGACACGGTCTACGAGATGCAGTACGGCCAATACGAG
GTCAAGGTGGAGGAGGAGCCCAAGAAATTGTTCGGGATGTTTTGAGGATA
TACTCTCACTTGCCAAACGTACCCGTGCGGGCCGGGACTGAAAGTGCTGT
TGAACCAATATGACACGGTCTACGAGATGCAGTACGGCCAATACGAGGTC
AAGGTGGAGGAGGAGCCCAAGAAATTGTTCGGGATGTTTTGA
back to top