prot_F-serratus_M_contig67.17706.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig67.17706.1
Unique Name	prot_F-serratus_M_contig67.17706.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	261

Homology

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 8.040e-104
Identity = 214/262 (81.68%), Postives = 219/262 (83.59%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGRSRSPRRXXXX--PPRRGSPXXXXXXXXXXXXXXXXXXXXSRSPIRDR 260
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDA DAVRE+DG+SI GREWRVE+SHQRGR DRG PPGG            XXXXXXXXXXXXXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNR+DM+RAVRELDDTYFADRRIRVDYDD GSG      P  XXX   PPRRGS XXXXXXXXXXXXXXXXXXXXSRSPIRDR
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGR-DRG-PPGG------------XXXXXXXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDR 248

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 9.760e-69
Identity = 151/217 (69.59%), Postives = 151/217 (69.59%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEI------------------------------------------SHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 175
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSI GREWRVEI                                          SHQRGR DRG PPGGG    XXXXXXXXXXXXXXXXXXXXXXXX                 YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGR-DRG-PPGGGYGGGXXXXXXXXXXXXXXXXXXXXXXXX-----------------YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.090e-45
Identity = 107/233 (45.92%), Postives = 132/233 (56.65%), Query Frame = 0

Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGR-SRSPRRXXXXPPRRG 230
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D RDA DAVR +DG  + G+  RVEISH R RG R      G             XXXXX                           +KVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++R+ M RA REL DT F DRRI ++ +D      R SRSP      PPRRG
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNR-RGRRXXXXXXGRGGGYGDRDRGYDXXXXXSSRPPPRAGGAPRKTG-----------FKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDRYRRDSRSP------PPRRG 214

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.200e-36
Identity = 92/219 (42.01%), Postives = 119/219 (54.34%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRG----RSRSP 219
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVEI+    R D GG   GG   XXXXXXXX                                  ++VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF ++EDM  A+++LDDT F    +R+  +  G G      RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIARGGSRRDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTD----------------FRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSSRRSRSP 204

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.610e-34
Identity = 75/214 (35.05%), Postives = 113/214 (52.80%), Query Frame = 0

Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGRSRSPRR 221
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D RDA DA++++DG+ + G   RV+++       RGG   GG                                             +KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +      + R RS+SPRR
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMA-------RGGVRRGGRGDRDRSYRDGSSDRHRSSG-------------------------HKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIK-----AVRDRSQSPRR 181

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 130 bits (326), Expect = 2.410e-32
Identity = 78/217 (35.94%), Postives = 109/217 (50.23%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGRSRSPRR 221
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R D GG  G                                               ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  ++DM  AV++LDDT F    +RV  +  G    RSRSP R
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELARGGSRRDGGGRRG---------------------DDERFGRGGSGGDRVERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRVAPE--GDSSRRSRSPAR 283

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A2D4BLB0_PYTIN (Serine/arginine-rich splicing factor 1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLB0_PYTIN)

HSP 1 Score: 127 bits (319), Expect = 2.870e-32
Identity = 81/203 (39.90%), Postives = 111/203 (54.68%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISH---QRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNREDMTRAVRELDDTYFADRRIRV 204
            GT+V+VG L     +R+++D F ++G ++ VW+ARNPPGFAFV F D RDA DA+R +DGR   G   RVE +    +R RGDRG                               XXXXXXX             ++VRIT LP G+ W ++KD +R AG+VT+ +V GD   +AEF  +EDM  A+++LDD  F    IR+
Sbjct:    2 GTRVYVGGLPRDATQREIQDGFGRYGHISNVWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVEQARGGTRRDRGDRG-----------------------------DFXXXXXXXRNERGRNPPQRTDFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVEGDGTAIAEFQTQEDMDNAIQKLDDKDFRGSYIRI 175

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 124 bits (312), Expect = 6.900e-32
Identity = 72/193 (37.31%), Postives = 101/193 (52.33%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNREDMTRAVRELDDTYF 197
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R D GG                      XXXX                        Y+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  ++DM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELARGGSRRDGGG---------------------RXXXXDRGGYGGRGGDRFDRGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 126 bits (316), Expect = 8.640e-32
Identity = 86/217 (39.63%), Postives = 118/217 (54.38%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGRSRSPRR 221
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R DR                        XXXXXXXXXX                  ++VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +R+D+  A+ +LDD  F    IR+    +   R RSRSPRR
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDR------------------------XXXXXXXXXXRGGDRFERGGRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRITAA-SSEERSRSRSPRR 193

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BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.100e-31
Identity = 110/210 (52.38%), Postives = 139/210 (66.19%), Query Frame = 0

Query:    7 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNREDMTRAVRELDDTYFADRRIRVDYDDAGSGRGRS 216
            +K++VGN+     E +L D+F K+G+++ VW+ARNPPGFAFV F D RDA DA+++++ R   GR  RVE+S +R            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ++V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   +DM RAVR+LD T F    I +  +D G  R RS
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKISSVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKERRX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDFDGGPITI-KEDRGGRRDRS 201

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig67.17706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5E4_ECTSI	8.040e-104	81.68	Similar to arginine/serine-rich splicing factor 7 ...	[more]
A0A6H5L109_9PHAE	9.760e-69	69.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z7K1_9STRA	1.090e-45	45.92	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YQ52_9STRA	1.200e-36	42.01	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6G0XSF8_9STRA	3.610e-34	35.05	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A484E7I0_BRELC	2.410e-32	35.94	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A2D4BLB0_PYTIN	2.870e-32	39.90	Serine/arginine-rich splicing factor 1-like protei...	[more]
G4YPP5_PHYSP	6.900e-32	37.31	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A8K1CTI4_PYTOL	8.640e-32	39.63	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A7S3PMS3_9STRA	1.100e-31	52.38	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 140..205 e-value: 2.1E-11 score: 53.9 coord: 8..76 e-value: 3.2E-20 score: 83.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..74 e-value: 3.3E-17 score: 62.1 coord: 141..203 e-value: 3.5E-9 score: 36.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 139..209 score: 11.435
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..80 score: 16.773
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 138..207 e-value: 8.6E-17 score: 62.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..129 e-value: 3.6E-23 score: 84.1
None	No IPR available	PANTHER	PTHR23003:SF27	NUCLEOLAR PROTEIN 3	coord: 7..254
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 7..254
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..206

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig67	contig	F-serratus_M_contig67:51521..55583 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig67.17706.1	mRNA_F-serratus_M_contig67.17706.1	Fucus serratus male	mRNA	F-serratus_M_contig67 50032..55583 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig67.17706.1 ID=prot_F-serratus_M_contig67.17706.1|Name=mRNA_F-serratus_M_contig67.17706.1|organism=Fucus serratus male|type=polypeptide|length=261bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADDRDATDAVREVDGRSIGGREWRVEISHQRGRGDRGGPPGGGGGYGGGG
GGYGGGGGGGYGGGGGYGGGGGGYGGGPRMGGAAPRTGYKVRITGLPEGM
RWSELKDFVRKAGDVTYADVRGDEGVAEFSNREDMTRAVRELDDTYFADR
RIRVDYDDAGSGRGRSRSPRRRSRSPPRRGSPPRGRSRSPPGRGRSPYGR
SRSRSPIRDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf