mRNA_F-serratus_M_contig67.17726.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig67.17726.1
Unique NamemRNA_F-serratus_M_contig67.17726.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig67.17726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig67contigF-serratus_M_contig67:608073..609890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1819
Cds size1596
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932051.4969742-UTR-F-serratus_M_contig67:608072..6082941622932051.4969742-UTR-F-serratus_M_contig67:608072..608294Fucus serratus maleUTRF-serratus_M_contig67 608073..608294 +
1690964121.2789178-UTR-F-serratus_M_contig67:608072..6082941690964121.2789178-UTR-F-serratus_M_contig67:608072..608294Fucus serratus maleUTRF-serratus_M_contig67 608073..608294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932051.509144-CDS-F-serratus_M_contig67:608294..6098901622932051.509144-CDS-F-serratus_M_contig67:608294..609890Fucus serratus maleCDSF-serratus_M_contig67 608295..609890 +
1690964121.2887576-CDS-F-serratus_M_contig67:608294..6098901690964121.2887576-CDS-F-serratus_M_contig67:608294..609890Fucus serratus maleCDSF-serratus_M_contig67 608295..609890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig67.17726.1prot_F-serratus_M_contig67.17726.1Fucus serratus malepolypeptideF-serratus_M_contig67 608295..609890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig67.17726.1

>prot_F-serratus_M_contig67.17726.1 ID=prot_F-serratus_M_contig67.17726.1|Name=mRNA_F-serratus_M_contig67.17726.1|organism=Fucus serratus male|type=polypeptide|length=532bp
MPETSKPCSQRTSARNRRDALYAALETAVREDFNWKRGGVGEFVGVGGIQ
VDTPTSAENTGASAKTYPSPILWYEEMTPFDLDAYHAAHRHLLPSSTSPT
GESVSNCHDYLLIRQNRLGSQENSLSIEGERLQKNVRDESAQGVIAKFGQ
AGIPTSSKGPDSPMAPSSPGSSIFPQPPQPVQSSERVDRPEDDSVNPPVE
EIFRKAYLAEPDVLRISRVRPTTPASASEETTTETRALCSKPIVGLRKRA
RTAPGVVAAVAEEEKETRWPEVKPRPLSSATSVSSTTAASLGCLFSDRPS
QPARDGQEADTEEVKVPDFGASSFGRGTELSPTPALPPESSQVVVPPTQT
MFLPGLPSQLLVTQQVDGAACDNQGEREEEEESVRSEHDLSRSSLPPSPT
GYLFDTRAPERESIDSGVKVAGKSTNSAPGAGHRSVGSSSHAVENSGDVS
GRTDYRKESRAQRYEEFVLALEAFVGETKGEDHDAIEGQIKAHVEREFHG
RGSLALVSTEDVLQGVWVGGQAEVVATLESHL
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mRNA from alignment at F-serratus_M_contig67:608073..609890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig67.17726.1 ID=mRNA_F-serratus_M_contig67.17726.1|Name=mRNA_F-serratus_M_contig67.17726.1|organism=Fucus serratus male|type=mRNA|length=1818bp|location=Sequence derived from alignment at F-serratus_M_contig67:608073..609890+ (Fucus serratus male)
CGCTCGCGCAATATTTCCTCAACTTTCATGCTCGCGCTTAATAGCTTCAC
GACAGATTAGAGCATCGTCGGTGAGCTTGCCTGCTTAACCGTGTGGAGGA
GGCAGCCCGTTATCGGCCAGCCTTTCACGGATCTCCTGGCCTATCCCTTT
CAACATTGCTGGTCCTTGAATGGATATGCTGACCAGACGGAAAAATAGTA
GACATAGAAGCACGGCGACACTATGCCCGAAACCTCGAAACCCTGCAGTC
AGCGCACGAGCGCTCGAAATCGTCGCGACGCGTTGTACGCAGCGCTTGAG
ACCGCTGTCCGAGAAGACTTCAACTGGAAAAGAGGTGGCGTGGGCGAATT
TGTCGGTGTTGGTGGTATCCAAGTGGATACTCCCACCAGTGCTGAAAATA
CCGGAGCATCGGCCAAGACGTACCCCTCCCCAATCCTCTGGTATGAAGAG
ATGACTCCATTCGACCTAGATGCCTACCACGCCGCCCATCGCCATCTACT
CCCCAGTTCTACGAGTCCGACCGGTGAATCCGTGTCTAATTGCCACGACT
ACCTATTGATACGTCAGAATCGGTTAGGGAGCCAAGAGAACTCGCTATCA
ATTGAGGGTGAGCGGTTGCAGAAAAATGTCCGTGATGAATCTGCTCAAGG
TGTGATTGCGAAGTTTGGGCAAGCAGGAATCCCCACCTCCTCAAAAGGAC
CAGACTCACCCATGGCGCCCTCATCACCAGGCAGCTCTATTTTTCCCCAG
CCCCCACAGCCGGTACAGAGTTCAGAACGAGTAGACCGACCTGAAGATGA
TTCCGTCAACCCTCCTGTGGAGGAAATATTCCGTAAGGCGTACTTGGCGG
AGCCGGATGTCTTACGGATTTCGCGCGTTCGGCCAACGACTCCGGCCTCC
GCGTCCGAGGAAACAACAACTGAGACTAGGGCGCTGTGTAGTAAACCCAT
AGTGGGCCTAAGAAAACGGGCGCGGACGGCACCAGGGGTTGTTGCTGCCG
TGGCGGAGGAGGAAAAAGAGACTCGATGGCCAGAGGTCAAACCGCGGCCG
CTTAGCAGTGCAACTAGCGTTTCCAGCACGACCGCTGCATCACTGGGATG
CCTGTTTTCCGACCGCCCCTCACAACCGGCGAGGGATGGACAGGAGGCGG
ACACCGAGGAGGTGAAGGTGCCCGATTTCGGTGCCTCTAGCTTCGGTCGT
GGGACGGAGCTGTCGCCCACACCAGCGCTTCCACCCGAGTCCTCGCAGGT
CGTGGTACCCCCGACGCAGACGATGTTCCTACCTGGTCTTCCCTCGCAGC
TGCTGGTGACTCAACAGGTTGATGGTGCGGCTTGCGACAACCAAGGGGAA
CGAGAGGAGGAAGAAGAGTCGGTCAGGTCTGAGCACGATCTCTCGCGTTC
ATCTTTGCCTCCATCCCCAACGGGATACCTATTCGATACGAGAGCTCCCG
AGAGAGAGAGCATTGATTCAGGCGTAAAAGTAGCGGGGAAGAGCACAAAT
TCGGCGCCGGGCGCCGGGCACCGAAGCGTTGGGAGCTCCTCACATGCTGT
GGAAAACAGCGGAGATGTATCCGGTCGCACCGACTACCGTAAAGAAAGCC
GCGCGCAACGTTACGAGGAATTTGTTCTTGCTCTGGAGGCGTTCGTGGGA
GAAACCAAAGGGGAGGACCATGATGCCATCGAGGGTCAAATAAAAGCGCA
TGTTGAGCGCGAATTTCACGGTCGCGGTAGTTTGGCTCTGGTTTCCACGG
AAGATGTTCTGCAGGGAGTGTGGGTGGGTGGGCAAGCCGAAGTTGTAGCC
ACCCTAGAAAGTCACCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig67:608073..609890+

>mRNA_F-serratus_M_contig67.17726.1 ID=mRNA_F-serratus_M_contig67.17726.1|Name=mRNA_F-serratus_M_contig67.17726.1|organism=Fucus serratus male|type=CDS|length=3192bp|location=Sequence derived from alignment at F-serratus_M_contig67:608073..609890+ (Fucus serratus male)
ATGCCCGAAACCTCGAAACCCTGCAGTCAGCGCACGAGCGCTCGAAATCG
TCGCGACGCGTTGTACGCAGCGCTTGAGACCGCTGTCCGAGAAGACTTCA
ACTGGAAAAGAGGTGGCGTGGGCGAATTTGTCGGTGTTGGTGGTATCCAA
GTGGATACTCCCACCAGTGCTGAAAATACCGGAGCATCGGCCAAGACGTA
CCCCTCCCCAATCCTCTGGTATGAAGAGATGACTCCATTCGACCTAGATG
CCTACCACGCCGCCCATCGCCATCTACTCCCCAGTTCTACGAGTCCGACC
GGTGAATCCGTGTCTAATTGCCACGACTACCTATTGATACGTCAGAATCG
GTTAGGGAGCCAAGAGAACTCGCTATCAATTGAGGGTGAGCGGTTGCAGA
AAAATGTCCGTGATGAATCTGCTCAAGGTGTGATTGCGAAGTTTGGGCAA
GCAGGAATCCCCACCTCCTCAAAAGGACCAGACTCACCCATGGCGCCCTC
ATCACCAGGCAGCTCTATTTTTCCCCAGCCCCCACAGCCGGTACAGAGTT
CAGAACGAGTAGACCGACCTGAAGATGATTCCGTCAACCCTCCTGTGGAG
GAAATATTCCGTAAGGCGTACTTGGCGGAGCCGGATGTCTTACGGATTTC
GCGCGTTCGGCCAACGACTCCGGCCTCCGCGTCCGAGGAAACAACAACTG
AGACTAGGGCGCTGTGTAGTAAACCCATAGTGGGCCTAAGAAAACGGGCG
CGGACGGCACCAGGGGTTGTTGCTGCCGTGGCGGAGGAGGAAAAAGAGAC
TCGATGGCCAGAGGTCAAACCGCGGCCGCTTAGCAGTGCAACTAGCGTTT
CCAGCACGACCGCTGCATCACTGGGATGCCTGTTTTCCGACCGCCCCTCA
CAACCGGCGAGGGATGGACAGGAGGCGGACACCGAGGAGGTGAAGGTGCC
CGATTTCGGTGCCTCTAGCTTCGGTCGTGGGACGGAGCTGTCGCCCACAC
CAGCGCTTCCACCCGAGTCCTCGCAGGTCGTGGTACCCCCGACGCAGACG
ATGTTCCTACCTGGTCTTCCCTCGCAGCTGCTGGTGACTCAACAGGTTGA
TGGTGCGGCTTGCGACAACCAAGGGGAACGAGAGGAGGAAGAAGAGTCGG
TCAGGTCTGAGCACGATCTCTCGCGTTCATCTTTGCCTCCATCCCCAACG
GGATACCTATTCGATACGAGAGCTCCCGAGAGAGAGAGCATTGATTCAGG
CGTAAAAGTAGCGGGGAAGAGCACAAATTCGGCGCCGGGCGCCGGGCACC
GAAGCGTTGGGAGCTCCTCACATGCTGTGGAAAACAGCGGAGATGTATCC
GGTCGCACCGACTACCGTAAAGAAAGCCGCGCGCAACGTTACGAGGAATT
TGTTCTTGCTCTGGAGGCGTTCGTGGGAGAAACCAAAGGGGAGGACCATG
ATGCCATCGAGGGTCAAATAAAAGCGCATGTTGAGCGCGAATTTCACGGT
CGCGGTAGTTTGGCTCTGGTTTCCACGGAAGATGTTCTGCAGGGAGTGTG
GGTGGGTGGGCAAGCCGAAGTTGTAGCCACCCTAGAAAGTCACCTTATGC
CCGAAACCTCGAAACCCTGCAGTCAGCGCACGAGCGCTCGAAATCGTCGC
GACGCGTTGTACGCAGCGCTTGAGACCGCTGTCCGAGAAGACTTCAACTG
GAAAAGAGGTGGCGTGGGCGAATTTGTCGGTGTTGGTGGTATCCAAGTGG
ATACTCCCACCAGTGCTGAAAATACCGGAGCATCGGCCAAGACGTACCCC
TCCCCAATCCTCTGGTATGAAGAGATGACTCCATTCGACCTAGATGCCTA
CCACGCCGCCCATCGCCATCTACTCCCCAGTTCTACGAGTCCGACCGGTG
AATCCGTGTCTAATTGCCACGACTACCTATTGATACGTCAGAATCGGTTA
GGGAGCCAAGAGAACTCGCTATCAATTGAGGGTGAGCGGTTGCAGAAAAA
TGTCCGTGATGAATCTGCTCAAGGTGTGATTGCGAAGTTTGGGCAAGCAG
GAATCCCCACCTCCTCAAAAGGACCAGACTCACCCATGGCGCCCTCATCA
CCAGGCAGCTCTATTTTTCCCCAGCCCCCACAGCCGGTACAGAGTTCAGA
ACGAGTAGACCGACCTGAAGATGATTCCGTCAACCCTCCTGTGGAGGAAA
TATTCCGTAAGGCGTACTTGGCGGAGCCGGATGTCTTACGGATTTCGCGC
GTTCGGCCAACGACTCCGGCCTCCGCGTCCGAGGAAACAACAACTGAGAC
TAGGGCGCTGTGTAGTAAACCCATAGTGGGCCTAAGAAAACGGGCGCGGA
CGGCACCAGGGGTTGTTGCTGCCGTGGCGGAGGAGGAAAAAGAGACTCGA
TGGCCAGAGGTCAAACCGCGGCCGCTTAGCAGTGCAACTAGCGTTTCCAG
CACGACCGCTGCATCACTGGGATGCCTGTTTTCCGACCGCCCCTCACAAC
CGGCGAGGGATGGACAGGAGGCGGACACCGAGGAGGTGAAGGTGCCCGAT
TTCGGTGCCTCTAGCTTCGGTCGTGGGACGGAGCTGTCGCCCACACCAGC
GCTTCCACCCGAGTCCTCGCAGGTCGTGGTACCCCCGACGCAGACGATGT
TCCTACCTGGTCTTCCCTCGCAGCTGCTGGTGACTCAACAGGTTGATGGT
GCGGCTTGCGACAACCAAGGGGAACGAGAGGAGGAAGAAGAGTCGGTCAG
GTCTGAGCACGATCTCTCGCGTTCATCTTTGCCTCCATCCCCAACGGGAT
ACCTATTCGATACGAGAGCTCCCGAGAGAGAGAGCATTGATTCAGGCGTA
AAAGTAGCGGGGAAGAGCACAAATTCGGCGCCGGGCGCCGGGCACCGAAG
CGTTGGGAGCTCCTCACATGCTGTGGAAAACAGCGGAGATGTATCCGGTC
GCACCGACTACCGTAAAGAAAGCCGCGCGCAACGTTACGAGGAATTTGTT
CTTGCTCTGGAGGCGTTCGTGGGAGAAACCAAAGGGGAGGACCATGATGC
CATCGAGGGTCAAATAAAAGCGCATGTTGAGCGCGAATTTCACGGTCGCG
GTAGTTTGGCTCTGGTTTCCACGGAAGATGTTCTGCAGGGAGTGTGGGTG
GGTGGGCAAGCCGAAGTTGTAGCCACCCTAGAAAGTCACCTT
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