mRNA_F-serratus_M_contig1235.1774.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1235.1774.1
Unique NamemRNA_F-serratus_M_contig1235.1774.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1235.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1235contigF-serratus_M_contig1235:73954..76088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2135
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1235.1774.1prot_F-serratus_M_contig1235.1774.1Fucus serratus malepolypeptideF-serratus_M_contig1235 74046..75350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.6927876-UTR-F-serratus_M_contig1235:73953..740451622929152.6927876-UTR-F-serratus_M_contig1235:73953..74045Fucus serratus maleUTRF-serratus_M_contig1235 73954..74045 +
1690962725.8417735-UTR-F-serratus_M_contig1235:73953..740451690962725.8417735-UTR-F-serratus_M_contig1235:73953..74045Fucus serratus maleUTRF-serratus_M_contig1235 73954..74045 +
1622929152.7226624-UTR-F-serratus_M_contig1235:75350..760881622929152.7226624-UTR-F-serratus_M_contig1235:75350..76088Fucus serratus maleUTRF-serratus_M_contig1235 75351..76088 +
1690962725.85967-UTR-F-serratus_M_contig1235:75350..760881690962725.85967-UTR-F-serratus_M_contig1235:75350..76088Fucus serratus maleUTRF-serratus_M_contig1235 75351..76088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.7076735-CDS-F-serratus_M_contig1235:74045..753501622929152.7076735-CDS-F-serratus_M_contig1235:74045..75350Fucus serratus maleCDSF-serratus_M_contig1235 74046..75350 +
1690962725.8508232-CDS-F-serratus_M_contig1235:74045..753501690962725.8508232-CDS-F-serratus_M_contig1235:74045..75350Fucus serratus maleCDSF-serratus_M_contig1235 74046..75350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1235.1774.1

>prot_F-serratus_M_contig1235.1774.1 ID=prot_F-serratus_M_contig1235.1774.1|Name=mRNA_F-serratus_M_contig1235.1774.1|organism=Fucus serratus male|type=polypeptide|length=435bp
MNDWTNNDASASREGRNIRVLAAAEAASDGVSSSSTSSVELMSVPRLVER
SPTLVKANIAVATSAAAQERALPCRLALHGTRPTAHTRRCGARGTTSESG
VVSESLDVYRTSAGSKSALLHVVIRTRPRSTVGFSPRLRMLDWEGFHGTK
TAQGSTSPPPADSASPARLRNPNAVDESKDEERPDPCGAAELQNVLYRDQ
PRCINRKIIVTPCDLYYKSESQLCGSSDATRFLTGNIPKGGVKTARQHTV
VPYPIVGKARRLCGRLYKGTVASSKPETLRGCVLGERDTVVRPRRTLFLV
SGQSQRLDPGARLRSTRWTPRDGRRPASARRSSPRDTLLSSTRKKVRAAQ
PRGRDRLNSCVRNKEGGDGVFATLPSQDSTRFHTDEYNDVSTVRLIAGKG
DSAGRRVLHVRLPRTPPTWLLTLRSAPPRCSNPA*
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mRNA from alignment at F-serratus_M_contig1235:73954..76088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1235.1774.1 ID=mRNA_F-serratus_M_contig1235.1774.1|Name=mRNA_F-serratus_M_contig1235.1774.1|organism=Fucus serratus male|type=mRNA|length=2135bp|location=Sequence derived from alignment at F-serratus_M_contig1235:73954..76088+ (Fucus serratus male)
CTGATCGAGAGCAGTCTCGTGCGTAGACCCTTTGACGAGGCTCTCCATTT
ACAACGGCTTAGACTAAGGAGTTGGGACGCGCCTAAAGACATATGAACGA
CTGGACAAACAATGATGCAAGCGCCTCACGAGAAGGACGAAATATACGCG
TTTTGGCGGCTGCGGAGGCGGCGAGCGACGGCGTCTCTTCAAGCAGTACG
TCTTCTGTGGAGTTGATGAGTGTTCCTCGGCTAGTCGAGCGGTCCCCAAC
TCTGGTTAAGGCTAACATAGCGGTAGCGACATCCGCAGCAGCACAGGAGC
GTGCGTTGCCATGCCGTCTGGCCTTACACGGAACTCGCCCGACTGCGCAC
ACACGTCGTTGTGGCGCGCGGGGAACTACTTCAGAATCTGGGGTAGTAAG
TGAATCTTTGGACGTCTATCGCACATCTGCAGGCAGCAAGTCAGCATTGC
TACACGTGGTTATCCGCACAAGACCCAGAAGCACAGTAGGGTTCTCACCG
AGGCTCAGAATGTTGGACTGGGAAGGGTTTCACGGCACCAAGACTGCACA
GGGGTCAACCTCGCCGCCTCCTGCCGACTCAGCGTCGCCAGCACGACTGC
GAAACCCGAATGCCGTTGACGAATCAAAGGACGAGGAGCGTCCCGATCCA
TGTGGAGCCGCAGAGTTACAGAATGTTCTTTACCGTGACCAACCGCGATG
TATCAATCGGAAAATAATAGTGACTCCATGCGACTTATACTACAAGAGTG
AGAGCCAGTTGTGCGGCTCCTCCGATGCAACCAGATTTCTTACTGGAAAT
ATACCAAAAGGCGGCGTGAAAACGGCCCGCCAGCACACAGTGGTGCCGTA
TCCGATTGTTGGGAAAGCGCGACGGCTTTGCGGTCGCCTATACAAGGGGA
CTGTAGCGTCGTCCAAGCCAGAGACTCTTCGTGGTTGCGTCCTTGGAGAA
CGAGATACCGTCGTTCGCCCTAGGCGAACCCTGTTCCTTGTCTCGGGACA
GAGTCAGCGACTTGACCCGGGCGCGCGATTGCGATCCACCCGATGGACGC
CTCGCGATGGACGTCGCCCCGCAAGTGCCCGGCGTTCTTCACCACGAGAT
ACGTTGCTTTCGTCGACCAGAAAGAAAGTAAGGGCGGCGCAACCACGCGG
ACGTGACCGCCTGAACTCATGCGTGCGGAATAAGGAAGGTGGCGATGGTG
TTTTTGCCACTTTACCGTCGCAAGACTCGACAAGATTTCACACCGACGAA
TACAATGACGTTAGCACGGTCAGGTTGATAGCTGGAAAGGGGGATAGCGC
TGGGAGGCGGGTACTCCACGTGAGATTACCGCGCACGCCGCCGACCTGGC
TACTAACTCTCAGGTCGGCGCCACCACGTTGCTCGAATCCTGCGTGACGG
CTTGGGTCGATTCCTTTGTCGTTGTTCCTACCGCTTGGTCGTCTGCCCGT
AGATAGCTTCGTTAATATATCACATCGCCACGACGGTGGCTCTCGGAGTT
AAAGGGGACTCTCTATTCGGCCTAGGCCTAGTCAGGGGCGCGTCGACGGC
GAGACCGTGTATGACCAAGTCGTATGGGGTGGTACTAAACCTTGGGGTGG
AAAAATGTCACGGGCCCGTTCGAGCATCATACGTATGTGAGAGTTTGGTG
TGAAAAATCCCCCTGATATACTCCCGAACTCCACTCTCACAAAGGTTTTC
TTTTGCCGTCCCCGCCATTCCAGGTAGGCGGCGGATTGTCTTGTCTTGCA
GCGTGTCGTAATTTTAAGTACGCTCTAGCTGGTTGGTCTTACCAAGGGTC
AGGGTTAGGGGATACAGGCGACATAATAACTGCAAATGATATTTTTCGGT
GGACGAATGTAAAAATCTGCGTCCCCTACCCCCTCGTGCACAATTCTTCT
AAAAAATCATTTGGAAGCAATTTAGCTCCGTGCAAGCGCCCTCTCCCGCC
GTGCCAATTTGGAGCGACATTGGCGTTTCGACCCTGTTGGGCGGAGAATT
TCAGCACGACGCCGTTACTGTCCTTGTTCTGGAGTGCACCGAGAAGGAGA
TCGGGAGCGTTTATGGTGCTCTGATGGCCATTCGTGGTATAGAGAGGAAG
GCCAGAGGGTTCTGGCTCATGAAACAATTGACGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1235:73954..76088+

>mRNA_F-serratus_M_contig1235.1774.1 ID=mRNA_F-serratus_M_contig1235.1774.1|Name=mRNA_F-serratus_M_contig1235.1774.1|organism=Fucus serratus male|type=CDS|length=2610bp|location=Sequence derived from alignment at F-serratus_M_contig1235:73954..76088+ (Fucus serratus male)
ATGAACGACTGGACAAACAATGATGCAAGCGCCTCACGAGAAGGACGAAA
TATACGCGTTTTGGCGGCTGCGGAGGCGGCGAGCGACGGCGTCTCTTCAA
GCAGTACGTCTTCTGTGGAGTTGATGAGTGTTCCTCGGCTAGTCGAGCGG
TCCCCAACTCTGGTTAAGGCTAACATAGCGGTAGCGACATCCGCAGCAGC
ACAGGAGCGTGCGTTGCCATGCCGTCTGGCCTTACACGGAACTCGCCCGA
CTGCGCACACACGTCGTTGTGGCGCGCGGGGAACTACTTCAGAATCTGGG
GTAGTAAGTGAATCTTTGGACGTCTATCGCACATCTGCAGGCAGCAAGTC
AGCATTGCTACACGTGGTTATCCGCACAAGACCCAGAAGCACAGTAGGGT
TCTCACCGAGGCTCAGAATGTTGGACTGGGAAGGGTTTCACGGCACCAAG
ACTGCACAGGGGTCAACCTCGCCGCCTCCTGCCGACTCAGCGTCGCCAGC
ACGACTGCGAAACCCGAATGCCGTTGACGAATCAAAGGACGAGGAGCGTC
CCGATCCATGTGGAGCCGCAGAGTTACAGAATGTTCTTTACCGTGACCAA
CCGCGATGTATCAATCGGAAAATAATAGTGACTCCATGCGACTTATACTA
CAAGAGTGAGAGCCAGTTGTGCGGCTCCTCCGATGCAACCAGATTTCTTA
CTGGAAATATACCAAAAGGCGGCGTGAAAACGGCCCGCCAGCACACAGTG
GTGCCGTATCCGATTGTTGGGAAAGCGCGACGGCTTTGCGGTCGCCTATA
CAAGGGGACTGTAGCGTCGTCCAAGCCAGAGACTCTTCGTGGTTGCGTCC
TTGGAGAACGAGATACCGTCGTTCGCCCTAGGCGAACCCTGTTCCTTGTC
TCGGGACAGAGTCAGCGACTTGACCCGGGCGCGCGATTGCGATCCACCCG
ATGGACGCCTCGCGATGGACGTCGCCCCGCAAGTGCCCGGCGTTCTTCAC
CACGAGATACGTTGCTTTCGTCGACCAGAAAGAAAGTAAGGGCGGCGCAA
CCACGCGGACGTGACCGCCTGAACTCATGCGTGCGGAATAAGGAAGGTGG
CGATGGTGTTTTTGCCACTTTACCGTCGCAAGACTCGACAAGATTTCACA
CCGACGAATACAATGACGTTAGCACGGTCAGGTTGATAGCTGGAAAGGGG
GATAGCGCTGGGAGGCGGGTACTCCACGTGAGATTACCGCGCACGCCGCC
GACCTGGCTACTAACTCTCAGGTCGGCGCCACCACGTTGCTCGAATCCTG
CGTGAATGAACGACTGGACAAACAATGATGCAAGCGCCTCACGAGAAGGA
CGAAATATACGCGTTTTGGCGGCTGCGGAGGCGGCGAGCGACGGCGTCTC
TTCAAGCAGTACGTCTTCTGTGGAGTTGATGAGTGTTCCTCGGCTAGTCG
AGCGGTCCCCAACTCTGGTTAAGGCTAACATAGCGGTAGCGACATCCGCA
GCAGCACAGGAGCGTGCGTTGCCATGCCGTCTGGCCTTACACGGAACTCG
CCCGACTGCGCACACACGTCGTTGTGGCGCGCGGGGAACTACTTCAGAAT
CTGGGGTAGTAAGTGAATCTTTGGACGTCTATCGCACATCTGCAGGCAGC
AAGTCAGCATTGCTACACGTGGTTATCCGCACAAGACCCAGAAGCACAGT
AGGGTTCTCACCGAGGCTCAGAATGTTGGACTGGGAAGGGTTTCACGGCA
CCAAGACTGCACAGGGGTCAACCTCGCCGCCTCCTGCCGACTCAGCGTCG
CCAGCACGACTGCGAAACCCGAATGCCGTTGACGAATCAAAGGACGAGGA
GCGTCCCGATCCATGTGGAGCCGCAGAGTTACAGAATGTTCTTTACCGTG
ACCAACCGCGATGTATCAATCGGAAAATAATAGTGACTCCATGCGACTTA
TACTACAAGAGTGAGAGCCAGTTGTGCGGCTCCTCCGATGCAACCAGATT
TCTTACTGGAAATATACCAAAAGGCGGCGTGAAAACGGCCCGCCAGCACA
CAGTGGTGCCGTATCCGATTGTTGGGAAAGCGCGACGGCTTTGCGGTCGC
CTATACAAGGGGACTGTAGCGTCGTCCAAGCCAGAGACTCTTCGTGGTTG
CGTCCTTGGAGAACGAGATACCGTCGTTCGCCCTAGGCGAACCCTGTTCC
TTGTCTCGGGACAGAGTCAGCGACTTGACCCGGGCGCGCGATTGCGATCC
ACCCGATGGACGCCTCGCGATGGACGTCGCCCCGCAAGTGCCCGGCGTTC
TTCACCACGAGATACGTTGCTTTCGTCGACCAGAAAGAAAGTAAGGGCGG
CGCAACCACGCGGACGTGACCGCCTGAACTCATGCGTGCGGAATAAGGAA
GGTGGCGATGGTGTTTTTGCCACTTTACCGTCGCAAGACTCGACAAGATT
TCACACCGACGAATACAATGACGTTAGCACGGTCAGGTTGATAGCTGGAA
AGGGGGATAGCGCTGGGAGGCGGGTACTCCACGTGAGATTACCGCGCACG
CCGCCGACCTGGCTACTAACTCTCAGGTCGGCGCCACCACGTTGCTCGAA
TCCTGCGTGA
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