mRNA_F-serratus_M_contig669.17698.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig669.17698.1
Unique NamemRNA_F-serratus_M_contig669.17698.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: D7G2K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.860e-21
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  157 MRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVGRRHG 288
            MRWGLVPSFT++GDKPDFFRMFNARSETAAEKPSFRRLVGRRHG
Sbjct:    1 MRWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHG 44
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A835Z2X9_9STRA (DUF159-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-19
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 MVQPQALASAVGFDPNVPLRRANDYRRRENAHPGNSTPIAYR---------------TTRGDEALRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVGRR 282
            +V+PQA+A A G   NVP RR   +R   N HPG + P+ Y                +   D  + SM WGLVPSF++  DKP+FFRMFNARSET   K  F+RL+ +R
Sbjct:    8 LVEPQAVARATGLPGNVPTRRTARFRPSCNVHPGQNVPVLYHAYAPEQQQEQEKGGGSGHQDLEVASMVWGLVPSFSKPEDKPNFFRMFNARSETVNSKSIFKRLMAKR 116
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A6H5JMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.560e-19
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:  160 RWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVGRRHG 288
            RWGLVPSFT++GDKPDFFRMFNARSETAAEKPSFRRLVGRRHG
Sbjct:   59 RWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHG 101
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A059LNY5_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LNY5_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.230e-17
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   73 YRRRENAHPGN-STPIAYRTTRGDEALRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLV 273
            YR   NA PG  STP+  R   G   +R+MRWGL+PSFT+   KPDFFRMFN RSET AE+P+FRRL+
Sbjct:   25 YRSSYNASPGAASTPVVTREADGSRTIRTMRWGLIPSFTKPDAKPDFFRMFNGRSETMAERPAFRRLL 92
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: UPI000C872F08 (abasic site processing protein HMCES n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C872F08)

HSP 1 Score: 84.0 bits (206), Expect = 5.280e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 VQPQALASAVGFDPN--VPLRRANDYRRRENAHPGNSTPIAYRTTRGDEA---LRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLV 273
            + PQ +  A GF PN  VP R+ + Y+   N  PG   P+     +  E+   +  M+WGLVPSFT++ +KPD FRMFNARSE+  EK SFRRL+
Sbjct:    9 LDPQQIGQACGFVPNSSVPTRQFDRYQPSYNVAPGAYLPVVVAARKDGESPVVIHCMKWGLVPSFTKKTEKPDHFRMFNARSESVKEKASFRRLM 103
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: I0Z017_COCSC (DUF159-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z017_COCSC)

HSP 1 Score: 81.6 bits (200), Expect = 9.760e-17
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   13 QALASA-VGFDPNVPLRRANDYRR---RENAHPGNSTPIAYRTTRGDEALRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVG 276
            Q LA+A VG D      R  DY +   + N  PG+ TPI  R  +GD  L++M WGLVPS+T++ DK DFFRMFNARSET  EK  F RL+G
Sbjct:   13 QVLAAAGVGED------RWRDYEKFLPKYNLGPGSRTPIVRRDKKGDAELQTMTWGLVPSWTKKEDKLDFFRMFNARSETVPEKTVFSRLLG 98
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A8J5LXW9_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LXW9_ZINOF)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-16
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    4 VQPQALASAVGFDPNVPLRRANDYRRRENAHPGNSTPIAY--RTTRGDEALRS---MRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLV 273
            + P  +A A GF  ++P R+ + YR   N  PG   P+    RTT   EA  S   M+WGLVPSFT++ +KPD ++MFNARSE+  EKPSF RL+
Sbjct:    9 LNPDRVARACGFAASIPTRQIDRYRPSYNVSPGAYLPVLLLERTTGEAEASPSICCMKWGLVPSFTKKTEKPDHYKMFNARSESVKEKPSFCRLL 103
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A1J3GCT7_NOCCA (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GCT7_NOCCA)

HSP 1 Score: 79.0 bits (193), Expect = 5.860e-16
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   73 YRRRENAHPGNSTPIAYRTTR----GDEALRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLV 273
            YR   N  PG++ P+  R ++    G   +  M+WGLVPSFT++ DKPDFF+MFNARSE+  EKPSFRRL+
Sbjct:   33 YRPSYNVAPGSNIPVLRRDSKVVGDGGVTVECMKWGLVPSFTKKTDKPDFFKMFNARSESVDEKPSFRRLL 103
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A2P2K2Z8_RHIMU (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-like n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K2Z8_RHIMU)

HSP 1 Score: 80.9 bits (198), Expect = 5.910e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   73 YRRRENAHPGNSTPIAYRTTRGDE---ALRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVGR 279
            YR   N  PG+S P+  R     +   A+  MRWGLVPSFT++ +KPDF+RMFNARSE+  EKPSFRRL+ R
Sbjct:   33 YRPSYNVSPGSSIPVVRREDESGKENYAVHCMRWGLVPSFTKKYEKPDFYRMFNARSESVGEKPSFRRLLTR 104
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BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Match: A0A0C9RQI2_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_25098_1227 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RQI2_9SPER)

HSP 1 Score: 79.0 bits (193), Expect = 6.070e-16
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:   19 LASAVGFDPNVPLRRANDYRRRENAHPGNSTPIAYRTT--RGDEA-LRSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLV 273
            ++ A GF  ++P R +  YR   N  PG+  P+  +     G E  +  M+WGLVPSFT++ +KPD FRMFNARSE+  EK SFRRL+
Sbjct:   14 VSRACGFQNSLPTRDSERYRPSYNVSPGSYMPVVCKEDMRNGREPHVHCMKWGLVPSFTKKNEKPDHFRMFNARSESVREKASFRRLL 101
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K0_ECTSI1.860e-2195.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2X9_9STRA1.190e-1944.04DUF159-domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5JMR4_9PHAE2.560e-1995.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A059LNY5_9CHLO1.230e-1760.29Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
UPI000C872F085.280e-1746.32abasic site processing protein HMCES n=1 Tax=Diosc... [more]
I0Z017_COCSC9.760e-1752.17DUF159-domain-containing protein n=1 Tax=Coccomyxa... [more]
A0A8J5LXW9_ZINOF1.940e-1647.37Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A1J3GCT7_NOCCA5.860e-1653.52Embryonic stem cell-specific 5-hydroxymethylcytosi... [more]
A0A2P2K2Z8_RHIMU5.910e-1655.56Embryonic stem cell-specific 5-hydroxymethylcytosi... [more]
A0A0C9RQI2_9SPER6.070e-1646.59TSA: Wollemia nobilis Ref_Wollemi_Transcript_25098... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig669contigF-serratus_M_contig669:355831..357220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D7G2K0
KEGG koko:K09518,ko:K13109
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Specifically binds 5-hydroxymethylcytosine (5hmC)- containing DNA in stem cells, suggesting that it acts as a specific reader of 5hmC in stem cells. May act as a peptidase
EggNOG OGsCOG2135@1,KOG2618@2759
Ec32 ortholog descriptionProtein of unknown function DUF159
Ec32 orthologEc-11_002520.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041,ko03110
Exons4
Model size290
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig669.17698.1prot_F-serratus_M_contig669.17698.1Fucus serratus malepolypeptideF-serratus_M_contig669 355831..357220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932050.0656102-CDS-F-serratus_M_contig669:355830..3558781622932050.0656102-CDS-F-serratus_M_contig669:355830..355878Fucus serratus maleCDSF-serratus_M_contig669 355831..355878 -
1690964120.6173866-CDS-F-serratus_M_contig669:355830..3558781690964120.6173866-CDS-F-serratus_M_contig669:355830..355878Fucus serratus maleCDSF-serratus_M_contig669 355831..355878 -
1622932050.0831342-CDS-F-serratus_M_contig669:356182..3562611622932050.0831342-CDS-F-serratus_M_contig669:356182..356261Fucus serratus maleCDSF-serratus_M_contig669 356183..356261 -
1690964120.6295812-CDS-F-serratus_M_contig669:356182..3562611690964120.6295812-CDS-F-serratus_M_contig669:356182..356261Fucus serratus maleCDSF-serratus_M_contig669 356183..356261 -
1622932050.1027744-CDS-F-serratus_M_contig669:356711..3567991622932050.1027744-CDS-F-serratus_M_contig669:356711..356799Fucus serratus maleCDSF-serratus_M_contig669 356712..356799 -
1690964120.640029-CDS-F-serratus_M_contig669:356711..3567991690964120.640029-CDS-F-serratus_M_contig669:356711..356799Fucus serratus maleCDSF-serratus_M_contig669 356712..356799 -
1622932050.1185696-CDS-F-serratus_M_contig669:357147..3572201622932050.1185696-CDS-F-serratus_M_contig669:357147..357220Fucus serratus maleCDSF-serratus_M_contig669 357148..357220 -
1690964120.6536312-CDS-F-serratus_M_contig669:357147..3572201690964120.6536312-CDS-F-serratus_M_contig669:357147..357220Fucus serratus maleCDSF-serratus_M_contig669 357148..357220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig669.17698.1

>prot_F-serratus_M_contig669.17698.1 ID=prot_F-serratus_M_contig669.17698.1|Name=mRNA_F-serratus_M_contig669.17698.1|organism=Fucus serratus male|type=polypeptide|length=96bp
MVQPQALASAVGFDPNVPLRRANDYRRRENAHPGNSTPIAYRTTRGDEAL
RSMRWGLVPSFTRQGDKPDFFRMFNARSETAAEKPSFRRLVGRRHG
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mRNA from alignment at F-serratus_M_contig669:355831..357220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig669.17698.1 ID=mRNA_F-serratus_M_contig669.17698.1|Name=mRNA_F-serratus_M_contig669.17698.1|organism=Fucus serratus male|type=mRNA|length=1390bp|location=Sequence derived from alignment at F-serratus_M_contig669:355831..357220- (Fucus serratus male)
ATGGTGCAGCCACAGGCGCTGGCCTCGGCGGTGGGCTTCGACCCGAACGT
TCCCCTCCGACGAGCCAATGACTGTAAGTGCTGCCCCCGATCTCATCCTG
GCCCCTCTTTAAAAGAAAGCGCGCAATCCCCTGAACTTCAACACCAGTTG
CAATACTGTTTAGAGTGTGGACATGTGCAGCATGTAAAGGAAGAACACGA
CATTGAAAAAATGCCTCGTTGGAAACCCTCACTACGCCTTTGTCCATTTT
ATATTCGACAAGTGCGTTCCAGTATCTGATAACATTTGATTTTGCGCCAT
CTACGCCGGACGAGTGGTCACCCCCTAAACCTGCGAATGTAAAGTACAGC
ACATCTGCTGCTGTCTGTGTGTAACTTGTGTGCTGCGATGTTGTGTAAAC
CTCTGTGGGCCGCTCGACCAGATCGCCGCAGAGAAAACGCCCACCCGGGG
AACTCGACTCCCATCGCCTACCGAACCACGCGCGGCGATGAGGCCCTCCG
CTCTATGAGGTGAGACTCAGAGTGAAGCAGCTAGAGGCAGAGGCGTCCGA
CAAGGCCAATGCCGGTGCTCTCACTATGCTAACATTGGGCGGCACATACC
GCGTAGTACATTGCACCAGTGGCATCAAATCATTTCCTGCTGCTTGAGGA
CAGGAAACGTCTATCCTTTGGTATGCAAACCAGACGTTACTCTCCACCAA
GACTTTCTTGAGAGCACGCCGTCGTTGTTAAAGGACGCGTCGGGAAATCA
CGCCGTCATCGTTGAGGATCTCGTTTTCGCATCGAGAAATGTTGAAGTAC
GCAGTGTTCGTCACACTACTGGTGGCACGTAGCCGACGTAGGGCATACCG
TACACATCATACGGTGGATAGACAGTGGCTAGATGATATTTAATGCCCGT
GTGCTTGCCTCCACGCCTTATGCTACGCGTTCACACGTCCCTGCTCTTGT
GCAAGTCAGGTGGGGTCTCGTGCCGTCTTTCACCAGGCAGGGAGACAAGC
CCGACTTCTTCAGGATGTTCAACGCAAGGAGCGAGACGGTAACACCCTAA
GCCTCTAGTGTTCCTTTTCCGTTTCCTTTTTTTCTTTGCACGGTCTGCTC
AAATCGATCTCTTCCTCTTTCTCCCCGATGTGGGTACAGTATATGCGCCC
CATAAAGGCGCGGGGATCGGGGCTACGATATGCCTCGAGATGGTCATATC
GTGCGTGAAGAACGCCCCCTGGACTGGTATGTTTTTTTGTTTTGTTTTTT
TGTTTTTTTGTCGATTTTCGTTTGCGTGATCACTTTTCCTTACTCGCCAT
CCGCTCTTTCTCTTCATCCCCCCTCTACCTCGAAAAAAAAAGGCAGCAGA
GAAACCATCGTTTCGGCGACTGGTGGGTCGTCGGCACGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig669:355831..357220-

>mRNA_F-serratus_M_contig669.17698.1 ID=mRNA_F-serratus_M_contig669.17698.1|Name=mRNA_F-serratus_M_contig669.17698.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig669:355831..357220- (Fucus serratus male)
ATGGTGCAGCCACAGGCGCTGGCCTCGGCGGTGGGCTTCGACCCGAACGT
TCCCCTCCGACGAGCCAATGACTATGGTGCAGCCACAGGCGCTGGCCTCG
GCGGTGGGCTTCGACCCGAACGTTCCCCTCCGACGAGCCAATGACTATCG
CCGCAGAGAAAACGCCCACCCGGGGAACTCGACTCCCATCGCCTACCGAA
CCACGCGCGGCGATGAGGCCCTCCGCTCTATGAGATCGCCGCAGAGAAAA
CGCCCACCCGGGGAACTCGACTCCCATCGCCTACCGAACCACGCGCGGCG
ATGAGGCCCTCCGCTCTATGAGGTGGGGTCTCGTGCCGTCTTTCACCAGG
CAGGGAGACAAGCCCGACTTCTTCAGGATGTTCAACGCAAGGAGCGAGAC
GGTGGGGTCTCGTGCCGTCTTTCACCAGGCAGGGAGACAAGCCCGACTTC
TTCAGGATGTTCAACGCAAGGAGCGAGACGGCAGCAGAGAAACCATCGTT
TCGGCGACTGGTGGGTCGTCGGCACGGCGCAGCAGAGAAACCATCGTTTC
GGCGACTGGTGGGTCGTCGGCACGGC
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