mRNA_F-serratus_M_contig669.17694.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig669.17694.1
Unique NamemRNA_F-serratus_M_contig669.17694.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig669.17694.1 vs. uniprot
Match: A0A6H5JM06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM06_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.760e-47
Identity = 99/169 (58.58%), Postives = 118/169 (69.82%), Query Frame = 1 
Query:   67 GGVGGGRSDRGARVGRTRSSSYGGKGSAPPEAREARQRHRRQRSHSRDSLLS-RSRSLSRVPHSFRPLVPPEGIFARDTAGRGEWETARGTGPGVKSPGGWSTRTFETDSTDAEEAPVAEGDADIEFVLVIAGGHDLNDECMFEAMTPPEFNLDGSVDGMEGFEMEEDA 570
            GG+GGG     + V R+R++SYGG  +   +    R RHRR  SHSRDS  S R RSLSR P + RP+ PPEGIF+ D  G G WET +G   GVKSPGGWS+ T ETDSTDAE  P  E  ADIEFVLV+AGGHDLNDEC+FEAMTPPE+ L+  VDG+E  +M +D 
Sbjct:   17 GGIGGG-----SGVHRSRAASYGGSDTIRRDKTGQRTRHRR--SHSRDSQPSLRRRSLSRTP-TQRPICPPEGIFSLDAGGLGAWETLKGAA-GVKSPGGWSSGTSETDSTDAEAPPEVETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDV 176
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BLAST of mRNA_F-serratus_M_contig669.17694.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.620e-40
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:  178 RHRRQRSHSRDSLLS-RSRSLSRVPHSFRPLVPPEGIFARDTAGRGEWETARGTGPGVKSPGGWSTRTFETDSTDAEEAPVAEGDADIEFVLVIAGGHDLNDECMFEAMTPPEFNLDGSVDGMEGFEMEEDA 570
            R R +RSHS DS  S R RSLSR P + RP+ PPEGIF+ D  G G WET +G   GVKSPGGWS+ T ETDSTDAE  P AE  ADIEFVLV+AGGHDLNDEC+FEAMTPPE+ L+  VDG+E  +M +D 
Sbjct:  837 RTRHRRSHSGDSQPSLRRRSLSRTP-TLRPICPPEGIFSLDAGGVGAWETLKGAA-GVKSPGGWSSGTSETDSTDAEAPPEAETGADIEFVLVVAGGHDLNDECIFEAMTPPEYGLEEFVDGVEALDMPDDV 966
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM06_9PHAE1.760e-4758.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2K2_ECTSI2.620e-4064.39Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig669contigF-serratus_M_contig669:299498..303368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size581
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig669.17694.1prot_F-serratus_M_contig669.17694.1Fucus serratus malepolypeptideF-serratus_M_contig669 299498..303368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932049.7442417-CDS-F-serratus_M_contig669:299497..2996741622932049.7442417-CDS-F-serratus_M_contig669:299497..299674Fucus serratus maleCDSF-serratus_M_contig669 299498..299674 +
1690964120.4324863-CDS-F-serratus_M_contig669:299497..2996741690964120.4324863-CDS-F-serratus_M_contig669:299497..299674Fucus serratus maleCDSF-serratus_M_contig669 299498..299674 +
1622932049.7617164-CDS-F-serratus_M_contig669:300684..3008541622932049.7617164-CDS-F-serratus_M_contig669:300684..300854Fucus serratus maleCDSF-serratus_M_contig669 300685..300854 +
1690964120.4419174-CDS-F-serratus_M_contig669:300684..3008541690964120.4419174-CDS-F-serratus_M_contig669:300684..300854Fucus serratus maleCDSF-serratus_M_contig669 300685..300854 +
1622932049.7787752-CDS-F-serratus_M_contig669:301912..3019731622932049.7787752-CDS-F-serratus_M_contig669:301912..301973Fucus serratus maleCDSF-serratus_M_contig669 301913..301973 +
1690964120.4507496-CDS-F-serratus_M_contig669:301912..3019731690964120.4507496-CDS-F-serratus_M_contig669:301912..301973Fucus serratus maleCDSF-serratus_M_contig669 301913..301973 +
1622932049.7933826-CDS-F-serratus_M_contig669:302226..3023131622932049.7933826-CDS-F-serratus_M_contig669:302226..302313Fucus serratus maleCDSF-serratus_M_contig669 302227..302313 +
1690964120.4602425-CDS-F-serratus_M_contig669:302226..3023131690964120.4602425-CDS-F-serratus_M_contig669:302226..302313Fucus serratus maleCDSF-serratus_M_contig669 302227..302313 +
1622932049.8184106-CDS-F-serratus_M_contig669:303284..3033681622932049.8184106-CDS-F-serratus_M_contig669:303284..303368Fucus serratus maleCDSF-serratus_M_contig669 303285..303368 +
1690964120.4699535-CDS-F-serratus_M_contig669:303284..3033681690964120.4699535-CDS-F-serratus_M_contig669:303284..303368Fucus serratus maleCDSF-serratus_M_contig669 303285..303368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig669.17694.1

>prot_F-serratus_M_contig669.17694.1 ID=prot_F-serratus_M_contig669.17694.1|Name=mRNA_F-serratus_M_contig669.17694.1|organism=Fucus serratus male|type=polypeptide|length=193bp
QPDQQDQHGKPDARGRPRGGGDGGVGGGRSDRGARVGRTRSSSYGGKGSA
PPEAREARQRHRRQRSHSRDSLLSRSRSLSRVPHSFRPLVPPEGIFARDT
AGRGEWETARGTGPGVKSPGGWSTRTFETDSTDAEEAPVAEGDADIEFVL
VIAGGHDLNDECMFEAMTPPEFNLDGSVDGMEGFEMEEDAEV*
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mRNA from alignment at F-serratus_M_contig669:299498..303368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig669.17694.1 ID=mRNA_F-serratus_M_contig669.17694.1|Name=mRNA_F-serratus_M_contig669.17694.1|organism=Fucus serratus male|type=mRNA|length=3871bp|location=Sequence derived from alignment at F-serratus_M_contig669:299498..303368+ (Fucus serratus male)
CAACCGGACCAGCAGGACCAGCACGGGAAGCCGGATGCAAGAGGGCGGCC
GAGGGGTGGGGGAGACGGAGGCGTGGGGGGCGGCAGAAGCGACCGAGGCG
CGAGGGTCGGCCGCACGCGCTCGTCGAGCTACGGTGGAAAAGGCTCCGCG
CCGCCAGAGGCGAGAGAAGCGAGACAGGTGAGAGGAGGGGCCCTTGTTTT
TTACTCGCCACTCAAAATGAAGCCCCTATGAATATTAGATTATAATGTGT
TTACTCGTCGCCCGAGTGGTCTAGTAGGTAACTTGCACACCACTCACTTA
CTATTAATTATTAATAGTGCGGAAGTCGTGAGTTCGATTGTTGATTTTTA
CCAAAGTAGGATTTGTGTTCGTTCTTTCGTAACGGAAAGCGTTTGAACGC
GAGTTAAGTAAAATTCAACCATTGGTGGACGAGTTGTAAGATTGCTGAGC
TTGCATCGCGATAAAAAATCGTAAGGCGTGAACCGTCGAGAGATGGGAAG
ATCCTTAGTGACCACAGGCAGAATGGTAATGATGAGGTCCATCGGCTATA
AGTGGGAATAAGAAAAACTGTTTATAAAAGTAGTGCGCAGCATAATCGTG
AAGGATGGATTATGACATCATTTTTTATTCTGTACTTTTGGCTTTTTTTT
TTTTTTTTTGGTCAACATCTTTTCATTACAGGTATCAGTGTTTTTAGCGC
AGGTGACAGGTGTCGTACACGACCTGCTGGGTCACGGATTTAATTAATAT
TAGTATTATTAACATAGCTTTTTTTTGTGTGCTTCGTACAAAGTGGCCTA
CGTACCTCCTCCACAAGCAGTACACTACAGTACAGTAGATGCTGTGGCTA
TAGTTCTGTTGAATGTACTGTTTGTACCCGATTAGACTAAAGTGCGTTAT
GACATACTTTTTGTATTACTATCAAAAACTCTAGAGCTGCGGTTTCAACA
GCTAGTACATGGCGACATTTTTGCCGTTATTTTTCTTGGGTTGGAGTACT
CACTCTATTAGTAATATATACCTATATATTACTACCTCGAGCTCTAGTCC
TAGCTCTGTATCTGACCTCCTCTAAAGTTTTGTTTTATGTCCGTGAGCCC
CCCGCCCGCCCACTCCCACATCGCCTTCCCCGCCATGTGTACACCCTCCT
GTTGTCTCCTGCGATCGTACAACTACTGGCACTGTAGCGGCACCGTCGTC
AGCGCTCGCACAGCAGGGACTCGCTGCTCTCCAGGAGTAGGAGCCTATCC
AGGGTGCCGCACAGCTTCCGACCACTGGTTCCTCCCGAAGGCATCTTCGC
CCGTGATACTGCCGGCCGGGGGGAGTGGGAAACCGCGAGGGGAACCGGTC
CCGGCGTGTGAGTCGGTCGTCTGAAAGTCCTCACATGCTCGAGCTAGTGC
AAGAGTACAACTGCGTTATCAATAGTATCATCGCCCACTGCTTTATTAAT
CGTGTTAGTAGTCCCTTAGTAGTCCCTTAGTAGTCCCTTCGAAACAAGGA
AGAGACCTTGTGGAGTGAACTGTCGTTGTTGCCACCCAGGATTACTGGAC
TGTTCGTAGCTCTATAGAAGTGTCCACGGGTCCCCGTATTTGATCATGCT
GTTGTAAGTGTATGCGTATACAGTACATATTGTACAGCCGGGTGATATTT
TTCTTGGATATTGCTCTTGGTTTTGTCTTTTGGTGTCCCTACATGGCGAT
TAGTGTAAGTGTACATCATAGCGGTGGGTTTCTCCTCGGTATTATACTGT
TGACCCAATGTTACCACCTTTGGGGAACCCGTTTGAATGCCACGAAGAGG
TTTTGTATTGCAGCCTATGATCCTACCTAAACGTGTTGACATTTTTTTTC
CCCCTGACTGGGGGATGCGTTCAGATTGTAGTAGTTATGGTATACTGGGT
ACATAATTATAATAGCATAGTCTACGAGCGCAACAAGTAGGTTGGCATTT
CGACAAAAAAAGTTCAGGACAGTATCAGCTACAGAAGGGAGTGCTCATAA
CATACCGGCAGTTGTTTAGTGCTGAAAATTGATCGTCTTGTGCGTGTGTG
TGTGTGTGTATATTTATTAAATTGCACATAACCACGCAATCCGGCCCTGT
CATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGTGGATCA
ATGATACGTGTGTGTGTGTGTGTTGATTAGGTTGCACATAACCGCGCAAT
GTGTGTGCGTTTGTGTGTGTGTGTGTGTATTTATTAAATTGCACACAACC
CGCGCAATCCGGCCCTGTCATCCTAGTCATTATATGCCACTCGCATTGAT
CCTCCCGAGGGGGGATTGTGTATGTGTGTATGTGTGTGTGTGTGTGTGTG
TGTTTTTCTTCCCCGACAGGAATCCCCGTCCCTCATGTGTACCTTTTTTA
ATCATAATATTCCAGAAAATCTCCTGGAGGCTGGAGTACGCGAACGTTCG
AAACCGATTCCACCGATGCCGAAGAGGTGACTGACCGAGACTGTCTTACT
GTCTTGTAGCAATTCGAGGTGTTACTCTATTGATATCATGAAAAAAAACG
AACCAGTACTTGGAATGATTTGGACAAGAAAAATCGTTATCAGTATACAG
TTTCTGATTTGTTGCTAACTCTACAGTTTCTAGTAACATTGGGCATGTCT
TGTCTTGAGGAGTTTTCACAAAGAAATTAAATAATCACGCCGTCTTTTTC
CATTGTTTTTTTTTTTTTTTCGATTTCAGGCTCCAGTCGCCGAAGGAGAC
GCGGACATCGAGTTTGTGCTGGTCATCGCGGGAGGACACGACCTTAACGA
TGAGTGTATGTTCGAGGTGAGCGACCTATGTGGCCTTCCTTCAAGTTTGT
GGTGCCTACGGATTCATTTTTTCTTCTTCTCTATGAATAGCCATTTCCCC
TTCTCCCTCTCTCTACAACAGTACTCTGTAAAGTACGTGAAATATTTTCC
TGTGCAATCTGTTTCAAAGAAAAAGTCTGAACGTAGCTATAAACCTCCTG
AATAATCAAAAGGTTCATTAGGTGGGAACATTGGCTGTAAGGACAAAATT
GTTTCGTTTCTCTTTTTATTTTTGCTATTATTATTAATAATAACGTTTTA
TTTGTCTTGTCATCTTCCCTCATCCGTTATTTACTGCATTTTAGAATAGG
TCTTGCATAGCGTTATGTTGGCTTTGGTTATTTCTCCTGTGGCTGATGAC
TGATGACTGTCAACAGTCGACTTATTGACCATTAATAGTGACTGTTGAGT
ATGGATTGATGACTGTTGACTACCCCAGGTATTGAGTAATCGTTTTTGCA
TTTTTGGCATCGCACAGCCTCTTTTTTTTTTTTTTTGTTGGAAGCTACAT
TTTGGAAAAAAATTCCGCATTTTTCGCGGTAAAACAGACCGTTGGGGTTT
TCATAAGATCGCGGTCCTCTAAAATAAACACCCGACACTTACAAACTAAC
TACAGTACTAATAAGCAAAGAAAGTGCCGTGCCGTGCTGTCCTGTCGGTG
TCTCAACTACTGTACTAATGACATTAGTACGGTTGACCAAATCAATGAGT
TCAAATGCCTCCGTAGGGTTTCCAAGTGTCGGTTATGTGAAACAAACCTA
CCAGGTATTTATTAAATATCACGCCCCTCACATTATCATTGTGATCTGAT
TTAAAATCTGCCTTTTTTTTCATTCTTCACTCTTTTTTGTGTATCATGTC
AATGGACTTCGTCTCCAGTCTTTATTTCTGGTGTTATATTTTTCAAAGCC
CTTTCCCACGCTTTTGCCCCCCCCCCCTTCTTTCCAGGCGATGACTCCTC
CGGAGTTTAACCTAGATGGGTCCGTGGACGGGATGGAGGGGTTCGAAATG
GAGGAAGACGCCGAGGTTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig669:299498..303368+

>mRNA_F-serratus_M_contig669.17694.1 ID=mRNA_F-serratus_M_contig669.17694.1|Name=mRNA_F-serratus_M_contig669.17694.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig669:299498..303368+ (Fucus serratus male)
CAACCGGACCAGCAGGACCAGCACGGGAAGCCGGATGCAAGAGGGCGGCC
GAGGGGTGGGGGAGACGGAGGCGTGGGGGGCGGCAGAAGCGACCGAGGCG
CGAGGGTCGGCCGCACGCGCTCGTCGAGCTACGGTGGAAAAGGCTCCGCG
CCGCCAGAGGCGAGAGAAGCGAGACAGCAACCGGACCAGCAGGACCAGCA
CGGGAAGCCGGATGCAAGAGGGCGGCCGAGGGGTGGGGGAGACGGAGGCG
TGGGGGGCGGCAGAAGCGACCGAGGCGCGAGGGTCGGCCGCACGCGCTCG
TCGAGCTACGGTGGAAAAGGCTCCGCGCCGCCAGAGGCGAGAGAAGCGAG
ACAGCGGCACCGTCGTCAGCGCTCGCACAGCAGGGACTCGCTGCTCTCCA
GGAGTAGGAGCCTATCCAGGGTGCCGCACAGCTTCCGACCACTGGTTCCT
CCCGAAGGCATCTTCGCCCGTGATACTGCCGGCCGGGGGGAGTGGGAAAC
CGCGAGGGGAACCGGTCCCGGCGTCGGCACCGTCGTCAGCGCTCGCACAG
CAGGGACTCGCTGCTCTCCAGGAGTAGGAGCCTATCCAGGGTGCCGCACA
GCTTCCGACCACTGGTTCCTCCCGAAGGCATCTTCGCCCGTGATACTGCC
GGCCGGGGGGAGTGGGAAACCGCGAGGGGAACCGGTCCCGGCGTAAAATC
TCCTGGAGGCTGGAGTACGCGAACGTTCGAAACCGATTCCACCGATGCCG
AAGAGAAAATCTCCTGGAGGCTGGAGTACGCGAACGTTCGAAACCGATTC
CACCGATGCCGAAGAGGCTCCAGTCGCCGAAGGAGACGCGGACATCGAGT
TTGTGCTGGTCATCGCGGGAGGACACGACCTTAACGATGAGTGTATGTTC
GAGGCTCCAGTCGCCGAAGGAGACGCGGACATCGAGTTTGTGCTGGTCAT
CGCGGGAGGACACGACCTTAACGATGAGTGTATGTTCGAGGCGATGACTC
CTCCGGAGTTTAACCTAGATGGGTCCGTGGACGGGATGGAGGGGTTCGAA
ATGGAGGAAGACGCCGAGGTTTGAGCGATGACTCCTCCGGAGTTTAACCT
AGATGGGTCCGTGGACGGGATGGAGGGGTTCGAAATGGAGGAAGACGCCG
AGGTTTGA
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