mRNA_F-serratus_M_contig1235.1782.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1235.1782.1
Unique NamemRNA_F-serratus_M_contig1235.1782.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1235.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1235contigF-serratus_M_contig1235:209841..210389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1235.1782.1prot_F-serratus_M_contig1235.1782.1Fucus serratus malepolypeptideF-serratus_M_contig1235 209899..210389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.6198-UTR-F-serratus_M_contig1235:209840..2098981622929152.6198-UTR-F-serratus_M_contig1235:209840..209898Fucus serratus maleUTRF-serratus_M_contig1235 209841..209898 +
1690962725.8057196-UTR-F-serratus_M_contig1235:209840..2098981690962725.8057196-UTR-F-serratus_M_contig1235:209840..209898Fucus serratus maleUTRF-serratus_M_contig1235 209841..209898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.6348207-CDS-F-serratus_M_contig1235:209898..2099301622929152.6348207-CDS-F-serratus_M_contig1235:209898..209930Fucus serratus maleCDSF-serratus_M_contig1235 209899..209930 +
1690962725.817901-CDS-F-serratus_M_contig1235:209898..2099301690962725.817901-CDS-F-serratus_M_contig1235:209898..209930Fucus serratus maleCDSF-serratus_M_contig1235 209899..209930 +
1622929152.6467392-CDS-F-serratus_M_contig1235:210148..2103891622929152.6467392-CDS-F-serratus_M_contig1235:210148..210389Fucus serratus maleCDSF-serratus_M_contig1235 210149..210389 +
1690962725.8302028-CDS-F-serratus_M_contig1235:210148..2103891690962725.8302028-CDS-F-serratus_M_contig1235:210148..210389Fucus serratus maleCDSF-serratus_M_contig1235 210149..210389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1235.1782.1

>prot_F-serratus_M_contig1235.1782.1 ID=prot_F-serratus_M_contig1235.1782.1|Name=mRNA_F-serratus_M_contig1235.1782.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MATEKTPSPVRFSGAAADSLLSAETAKQSETERARPDETGATPSSASGHT
SGDNLGQTRPKDNAEGTGEEGEPDIPTKRQQRDKEEQMREG
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mRNA from alignment at F-serratus_M_contig1235:209841..210389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1235.1782.1 ID=mRNA_F-serratus_M_contig1235.1782.1|Name=mRNA_F-serratus_M_contig1235.1782.1|organism=Fucus serratus male|type=mRNA|length=549bp|location=Sequence derived from alignment at F-serratus_M_contig1235:209841..210389+ (Fucus serratus male)
ATTGCTCTATACGATAGGCGCAGTGTTGCCGAAAGCCTGACTCGATTAGA
CAGCTACTATGGCAACGGAAAAAACTCCTTCCCCGGTCAGGTGCCCGCCA
ATTTTATGCGCGGTGGCCCCTTGACGTTATTCTCGTCGGTCGTCCCCCCG
ATAAGCTCGTTTGGCAATGACTACAAACCATCATGACTGCTTCTGCGATG
AAAGCCATTCGACTGAACATAACGAATGTCTGACGAATAACATTGCCGAA
CCCGTACTGTTAAGACCCCGAGAGACGTGACATATCGTTCCGGCTTACCA
TGTCTCAGGTTTTCCGGAGCCGCCGCCGACTCTCTGCTTTCCGCGGAAAC
CGCGAAGCAGAGTGAGACAGAGCGAGCTCGTCCCGACGAGACGGGAGCGA
CCCCATCGAGCGCAAGTGGACATACTTCAGGGGACAACTTGGGGCAAACT
AGGCCGAAGGATAACGCAGAAGGAACAGGGGAGGAAGGCGAGCCAGATAT
TCCGACGAAGAGACAGCAGCGCGACAAAGAAGAGCAGATGCGCGAAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1235:209841..210389+

>mRNA_F-serratus_M_contig1235.1782.1 ID=mRNA_F-serratus_M_contig1235.1782.1|Name=mRNA_F-serratus_M_contig1235.1782.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig1235:209841..210389+ (Fucus serratus male)
ATGGCAACGGAAAAAACTCCTTCCCCGGTCAGATGGCAACGGAAAAAACT
CCTTCCCCGGTCAGGTTTTCCGGAGCCGCCGCCGACTCTCTGCTTTCCGC
GGAAACCGCGAAGCAGAGTGAGACAGAGCGAGCTCGTCCCGACGAGACGG
GAGCGACCCCATCGAGCGCAAGTGGACATACTTCAGGGGACAACTTGGGG
CAAACTAGGCCGAAGGATAACGCAGAAGGAACAGGGGAGGAAGGCGAGCC
AGATATTCCGACGAAGAGACAGCAGCGCGACAAAGAAGAGCAGATGCGCG
AAGGGGTTTTCCGGAGCCGCCGCCGACTCTCTGCTTTCCGCGGAAACCGC
GAAGCAGAGTGAGACAGAGCGAGCTCGTCCCGACGAGACGGGAGCGACCC
CATCGAGCGCAAGTGGACATACTTCAGGGGACAACTTGGGGCAAACTAGG
CCGAAGGATAACGCAGAAGGAACAGGGGAGGAAGGCGAGCCAGATATTCC
GACGAAGAGACAGCAGCGCGACAAAGAAGAGCAGATGCGCGAAGGG
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