mRNA_F-serratus_M_contig6683.17681.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6683.17681.1
Unique NamemRNA_F-serratus_M_contig6683.17681.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6683.17681.1 vs. uniprot
Match: D7FQC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.600e-24
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:  289 WEIGRPPRRGVGAAREHFHRYTQRHCMLFPHRSPKEVEEKLKVMFRCNAMKEPNEREHWLNLSACKGHFPTPSALSPCKIDAAVNGAR 552
            W++GRPPRRGV A REHF RYTQRHC+LFP RSP EV  +LK+MFR N +KEPNEREHWL L+A +G FP P      K +AA +  R
Sbjct:  270 WDLGRPPRRGVHAEREHFFRYTQRHCLLFPRRSPAEVIARLKLMFRYNTLKEPNEREHWLKLNAKRGFFPQPQQ----KANAAASSTR 353
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BLAST of mRNA_F-serratus_M_contig6683.17681.1 vs. uniprot
Match: A0A6H5JI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI11_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.720e-9
Identity = 41/78 (52.56%), Postives = 46/78 (58.97%), Query Frame = 2 
Query: 1052 DRLHAAGDQDETRDGPSETGLLNYTSLGGQIESRREKSPTRTFSRESLASENV--FQVVHLPEPGPGSFWPHFSGTST 1279
            D  HA G  D    G  ET LL+YTSLG Q  S R  SP   F+R+ L SEN+  FQ    PEPGPGSF P+ S TST
Sbjct:  472 DNAHAEGVDDGG--GHEETELLDYTSLGVQTISSRATSPAFGFARDGLGSENLSMFQADKRPEPGPGSFCPNLSSTST 547
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6683.17681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQC6_ECTSI3.600e-2462.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI11_9PHAE5.720e-952.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6683contigF-serratus_M_contig6683:20352..21834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1281
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6683.17681.1prot_F-serratus_M_contig6683.17681.1Fucus serratus malepolypeptideF-serratus_M_contig6683 20586..21615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932047.1484625-UTR-F-serratus_M_contig6683:20351..205851622932047.1484625-UTR-F-serratus_M_contig6683:20351..20585Fucus serratus maleUTRF-serratus_M_contig6683 20352..20585 -
1690964119.0001483-UTR-F-serratus_M_contig6683:20351..205851690964119.0001483-UTR-F-serratus_M_contig6683:20351..20585Fucus serratus maleUTRF-serratus_M_contig6683 20352..20585 -
1622932047.2083051-UTR-F-serratus_M_contig6683:21615..218341622932047.2083051-UTR-F-serratus_M_contig6683:21615..21834Fucus serratus maleUTRF-serratus_M_contig6683 21616..21834 -
1690964119.0296998-UTR-F-serratus_M_contig6683:21615..218341690964119.0296998-UTR-F-serratus_M_contig6683:21615..21834Fucus serratus maleUTRF-serratus_M_contig6683 21616..21834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932047.1676626-CDS-F-serratus_M_contig6683:20585..211911622932047.1676626-CDS-F-serratus_M_contig6683:20585..21191Fucus serratus maleCDSF-serratus_M_contig6683 20586..21191 -
1690964119.010695-CDS-F-serratus_M_contig6683:20585..211911690964119.010695-CDS-F-serratus_M_contig6683:20585..21191Fucus serratus maleCDSF-serratus_M_contig6683 20586..21191 -
1622932047.1889598-CDS-F-serratus_M_contig6683:21393..216151622932047.1889598-CDS-F-serratus_M_contig6683:21393..21615Fucus serratus maleCDSF-serratus_M_contig6683 21394..21615 -
1690964119.0201974-CDS-F-serratus_M_contig6683:21393..216151690964119.0201974-CDS-F-serratus_M_contig6683:21393..21615Fucus serratus maleCDSF-serratus_M_contig6683 21394..21615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6683.17681.1

>prot_F-serratus_M_contig6683.17681.1 ID=prot_F-serratus_M_contig6683.17681.1|Name=mRNA_F-serratus_M_contig6683.17681.1|organism=Fucus serratus male|type=polypeptide|length=276bp
MCPRECQDRGALFSSFLTDSRPDWEIGRPPRRGVGAAREHFHRYTQRHCM
LFPHRSPKEVEEKLKVMFRCNAMKEPNEREHWLNLSACKGHFPTPSALSP
CKIDAAVNGARRCFRRKNVGTFSSKTVRRKYSENESRDPPCSTKIWATPC
KSSHTPSSLLVEECSSLLNSSAADSESQSLRPLSADCRRRPRCTPRKPDL
PTPTFHCEDTVASRLCPHSTTPPDRLLPLGGLARHRTAARDRREVSAATS
WEATVDRLSTDPEDVRGLRRGALGS*
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mRNA from alignment at F-serratus_M_contig6683:20352..21834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6683.17681.1 ID=mRNA_F-serratus_M_contig6683.17681.1|Name=mRNA_F-serratus_M_contig6683.17681.1|organism=Fucus serratus male|type=mRNA|length=1483bp|location=Sequence derived from alignment at F-serratus_M_contig6683:20352..21834- (Fucus serratus male)
AGGGCCAGACGAAGGCTTTTCTGGTAGCCTTCCGCCGTCCCTGTTAGCCA
ATAGTAGTGATGAGTAAATGCAGAACCGTGAACATAGTATTAATTATATT
CCTTAGGCACGAGAGAAAGGTTTCTGGCCCGGATCATCTTTGATTTATAT
GGTGCCTTTTTTTCGAAGATCCCTCAGATAATACTTGCCCGTAAGCATAT
ATTTCCCCGTTGGTGCCCGATGTGCCCTCGTGAATGCCAAGATCGGGGCG
CGTTGTTCAGCTCATTCCTTACCGATTCTCGTCCAGATTGGGAAATAGGG
CGACCCCCTCGACGAGGCGTCGGTGCCGCGCGGGAGCATTTCCATCGATA
CACACAGAGGCACTGCATGCTGTTCCCGCATCGATCGCCGAAAGAGGTGG
AGGAGAAGCTCAAGGTTATGTTTCGGTGCAATGCCATGAAGGTCAGTCGT
AATGCTGTCATGGACCAGCCAACGAATACAAGTGGAACTTCGGATTACTA
CGCGTGTGTCAGCTTTTCCTGGACTGCTGTCGCGCAACGAGTAAATGGCG
AGCGCGACGCGTGATGGAGAGATTGGTCTTTCTGTTGCTCACCCCCCCTC
TCTCCCCTCCTCAAATGCTCAATCCCCACCGGGCCGATCACAGGAACCAA
ACGAGCGAGAGCACTGGCTGAACTTGAGCGCTTGTAAGGGGCACTTCCCA
ACGCCAAGTGCCCTAAGCCCTTGCAAAATCGACGCAGCAGTTAACGGAGC
ACGTCGATGTTTTCGACGAAAAAACGTGGGCACCTTCTCCTCCAAAACAG
TCCGAAGAAAATATTCCGAAAATGAGTCACGTGACCCGCCGTGCTCCACA
AAGATCTGGGCGACGCCCTGTAAGAGTTCTCATACACCGTCAAGTCTCCT
GGTCGAAGAGTGCTCTTCGCTCCTGAACTCTTCTGCTGCCGATTCGGAGA
GTCAATCGTTGCGTCCGCTATCGGCGGACTGTCGGCGTCGGCCGCGTTGT
ACCCCGAGGAAGCCCGATCTACCGACGCCAACGTTTCACTGCGAAGACAC
AGTGGCGTCTCGGCTGTGTCCCCATTCTACGACCCCACCCGACCGTCTTC
TCCCGCTTGGAGGTTTGGCGAGACATCGAACCGCCGCTCGGGATCGGAGG
GAGGTATCCGCTGCAACCTCGTGGGAAGCCACGGTGGATCGTTTGTCGAC
GGACCCCGAAGACGTCCGTGGGCTTCGTCGGGGTGCGCTAGGAAGTTAAC
GCAGACAGGCTTCATGCCGCCGGCGACCAAGACGAAACACGCGACGGGCC
TAGTGAGACGGGGCTGTTGAACTACACATCGCTCGGCGGGCAGATCGAAT
CACGCCGCGAGAAATCACCGACGCGCACATTCTCGAGGGAGAGTCTCGCC
TCCGAGAACGTGTTCCAGGTCGTCCATTTGCCGGAGCCCGGTCCCGGGAG
CTTTTGGCCGCACTTCTCGGGGACAAGCACTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6683:20352..21834-

>mRNA_F-serratus_M_contig6683.17681.1 ID=mRNA_F-serratus_M_contig6683.17681.1|Name=mRNA_F-serratus_M_contig6683.17681.1|organism=Fucus serratus male|type=CDS|length=1656bp|location=Sequence derived from alignment at F-serratus_M_contig6683:20352..21834- (Fucus serratus male)
ATGTGCCCTCGTGAATGCCAAGATCGGGGCGCGTTGTTCAGCTCATTCCT
TACCGATTCTCGTCCAGATTGGGAAATAGGGCGACCCCCTCGACGAGGCG
TCGGTGCCGCGCGGGAGCATTTCCATCGATACACACAGAGGCACTGCATG
CTGTTCCCGCATCGATCGCCGAAAGAGGTGGAGGAGAAGCTCAAGGTTAT
GTTTCGGTGCAATGCCATGAAGATGTGCCCTCGTGAATGCCAAGATCGGG
GCGCGTTGTTCAGCTCATTCCTTACCGATTCTCGTCCAGATTGGGAAATA
GGGCGACCCCCTCGACGAGGCGTCGGTGCCGCGCGGGAGCATTTCCATCG
ATACACACAGAGGCACTGCATGCTGTTCCCGCATCGATCGCCGAAAGAGG
TGGAGGAGAAGCTCAAGGTTATGTTTCGGTGCAATGCCATGAAGGAACCA
AACGAGCGAGAGCACTGGCTGAACTTGAGCGCTTGTAAGGGGCACTTCCC
AACGCCAAGTGCCCTAAGCCCTTGCAAAATCGACGCAGCAGTTAACGGAG
CACGTCGATGTTTTCGACGAAAAAACGTGGGCACCTTCTCCTCCAAAACA
GTCCGAAGAAAATATTCCGAAAATGAGTCACGTGACCCGCCGTGCTCCAC
AAAGATCTGGGCGACGCCCTGTAAGAGTTCTCATACACCGTCAAGTCTCC
TGGTCGAAGAGTGCTCTTCGCTCCTGAACTCTTCTGCTGCCGATTCGGAG
AGTCAATCGTTGCGTCCGCTATCGGCGGACTGTCGGCGTCGGCCGCGTTG
TACCCCGAGGAAGCCCGATCTACCGACGCCAACGTTTCACTGCGAAGACA
CAGTGGCGTCTCGGCTGTGTCCCCATTCTACGACCCCACCCGACCGTCTT
CTCCCGCTTGGAGGTTTGGCGAGACATCGAACCGCCGCTCGGGATCGGAG
GGAGGTATCCGCTGCAACCTCGTGGGAAGCCACGGTGGATCGTTTGTCGA
CGGACCCCGAAGACGTCCGTGGGCTTCGTCGGGGTGCGCTAGGAAGTTAA
GAACCAAACGAGCGAGAGCACTGGCTGAACTTGAGCGCTTGTAAGGGGCA
CTTCCCAACGCCAAGTGCCCTAAGCCCTTGCAAAATCGACGCAGCAGTTA
ACGGAGCACGTCGATGTTTTCGACGAAAAAACGTGGGCACCTTCTCCTCC
AAAACAGTCCGAAGAAAATATTCCGAAAATGAGTCACGTGACCCGCCGTG
CTCCACAAAGATCTGGGCGACGCCCTGTAAGAGTTCTCATACACCGTCAA
GTCTCCTGGTCGAAGAGTGCTCTTCGCTCCTGAACTCTTCTGCTGCCGAT
TCGGAGAGTCAATCGTTGCGTCCGCTATCGGCGGACTGTCGGCGTCGGCC
GCGTTGTACCCCGAGGAAGCCCGATCTACCGACGCCAACGTTTCACTGCG
AAGACACAGTGGCGTCTCGGCTGTGTCCCCATTCTACGACCCCACCCGAC
CGTCTTCTCCCGCTTGGAGGTTTGGCGAGACATCGAACCGCCGCTCGGGA
TCGGAGGGAGGTATCCGCTGCAACCTCGTGGGAAGCCACGGTGGATCGTT
TGTCGACGGACCCCGAAGACGTCCGTGGGCTTCGTCGGGGTGCGCTAGGA
AGTTAA
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