mRNA_F-serratus_M_contig6665.17664.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6665.17664.1
Unique NamemRNA_F-serratus_M_contig6665.17664.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6665.17664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6665contigF-serratus_M_contig6665:14579..14975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size170
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6665.17664.1prot_F-serratus_M_contig6665.17664.1Fucus serratus malepolypeptideF-serratus_M_contig6665 14612..14975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.005625-UTR-F-serratus_M_contig6665:14578..146111622932044.005625-UTR-F-serratus_M_contig6665:14578..14611Fucus serratus maleUTRF-serratus_M_contig6665 14579..14611 +
1690964117.6387696-UTR-F-serratus_M_contig6665:14578..146111690964117.6387696-UTR-F-serratus_M_contig6665:14578..14611Fucus serratus maleUTRF-serratus_M_contig6665 14579..14611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.023018-CDS-F-serratus_M_contig6665:14611..146731622932044.023018-CDS-F-serratus_M_contig6665:14611..14673Fucus serratus maleCDSF-serratus_M_contig6665 14612..14673 +
1690964117.648649-CDS-F-serratus_M_contig6665:14611..146731690964117.648649-CDS-F-serratus_M_contig6665:14611..14673Fucus serratus maleCDSF-serratus_M_contig6665 14612..14673 +
1622932044.0376554-CDS-F-serratus_M_contig6665:14902..149751622932044.0376554-CDS-F-serratus_M_contig6665:14902..14975Fucus serratus maleCDSF-serratus_M_contig6665 14903..14975 +
1690964117.6576242-CDS-F-serratus_M_contig6665:14902..149751690964117.6576242-CDS-F-serratus_M_contig6665:14902..14975Fucus serratus maleCDSF-serratus_M_contig6665 14903..14975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6665.17664.1

>prot_F-serratus_M_contig6665.17664.1 ID=prot_F-serratus_M_contig6665.17664.1|Name=mRNA_F-serratus_M_contig6665.17664.1|organism=Fucus serratus male|type=polypeptide|length=45bp
MPRISSRRCCPGRRYATTRNRRSPSRGIRRPAPTYQVPQPGEQTV
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mRNA from alignment at F-serratus_M_contig6665:14579..14975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6665.17664.1 ID=mRNA_F-serratus_M_contig6665.17664.1|Name=mRNA_F-serratus_M_contig6665.17664.1|organism=Fucus serratus male|type=mRNA|length=397bp|location=Sequence derived from alignment at F-serratus_M_contig6665:14579..14975+ (Fucus serratus male)
GCTCTAGGTCGACGGCCGTGAAAAAATAAGGATATGCCGCGCATCTCTTC
AAGGCGGTGTTGCCCAGGCAGGCGATACGCTACTACAAGAAACCGGTATG
ATCAATACAGAGCTTAAAGGCATGAAGTCTTGGTCTGTGTTTTTGTTTCA
AGGTTAACATGGTTTTGGACGTTATGATAATTTTTACTGTTAAATTTTCC
AGAGTAACTTCGATACGATCAGGTGATGAATGATCAGAGTTACACCTACG
CATTGTTTTTTTCTAGAGAAAGCATGTCGCACCCTCGTGATCAACCCCAC
ACTCAAACTTGTACACGCTTTCAGCCGATCCCCGTCTCGAGGTATCAGGC
GACCTGCTCCCACCTACCAAGTGCCTCAGCCGGGCGAGCAGACTGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6665:14579..14975+

>mRNA_F-serratus_M_contig6665.17664.1 ID=mRNA_F-serratus_M_contig6665.17664.1|Name=mRNA_F-serratus_M_contig6665.17664.1|organism=Fucus serratus male|type=CDS|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig6665:14579..14975+ (Fucus serratus male)
ATGCCGCGCATCTCTTCAAGGCGGTGTTGCCCAGGCAGGCGATACGCTAC
TACAAGAAACCGATGCCGCGCATCTCTTCAAGGCGGTGTTGCCCAGGCAG
GCGATACGCTACTACAAGAAACCGCCGATCCCCGTCTCGAGGTATCAGGC
GACCTGCTCCCACCTACCAAGTGCCTCAGCCGGGCGAGCAGACTGTGCCG
ATCCCCGTCTCGAGGTATCAGGCGACCTGCTCCCACCTACCAAGTGCCTC
AGCCGGGCGAGCAGACTGTG
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