mRNA_F-serratus_M_contig6660.17663.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6660.17663.1
Unique NamemRNA_F-serratus_M_contig6660.17663.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6660.17663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6660contigF-serratus_M_contig6660:27036..27533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.8082998-UTR-F-serratus_M_contig6660:27035..271071622932043.8082998-UTR-F-serratus_M_contig6660:27035..27107Fucus serratus maleUTRF-serratus_M_contig6660 27036..27107 +
1690964117.5610192-UTR-F-serratus_M_contig6660:27035..271071690964117.5610192-UTR-F-serratus_M_contig6660:27035..27107Fucus serratus maleUTRF-serratus_M_contig6660 27036..27107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932043.8218033-CDS-F-serratus_M_contig6660:27107..275331622932043.8218033-CDS-F-serratus_M_contig6660:27107..27533Fucus serratus maleCDSF-serratus_M_contig6660 27108..27533 +
1690964117.5743206-CDS-F-serratus_M_contig6660:27107..275331690964117.5743206-CDS-F-serratus_M_contig6660:27107..27533Fucus serratus maleCDSF-serratus_M_contig6660 27108..27533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6660.17663.1prot_F-serratus_M_contig6660.17663.1Fucus serratus malepolypeptideF-serratus_M_contig6660 27108..27533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6660.17663.1

>prot_F-serratus_M_contig6660.17663.1 ID=prot_F-serratus_M_contig6660.17663.1|Name=mRNA_F-serratus_M_contig6660.17663.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MATYPPLVFRSFCVEAFHPCETVPGGETLAPPKTTLRNYLRTLLFHELIE
FGEGLVVPQALTFLFQRSKITCAVGLAKSRNMLFCIADFTALNQYGKFAI
VEINYGSFLMVECWVMRLRSLFVVCQHACSKGWGDKRERYK*
back to top

mRNA from alignment at F-serratus_M_contig6660:27036..27533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6660.17663.1 ID=mRNA_F-serratus_M_contig6660.17663.1|Name=mRNA_F-serratus_M_contig6660.17663.1|organism=Fucus serratus male|type=mRNA|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig6660:27036..27533+ (Fucus serratus male)
GCCCGGCTGGAAGAAATGTAGCTAAAATCGTAACATTGCTGCAGTGGATG
GAGGTGTCGCGAGGTATGAAAAATGGCAACATACCCGCCTTTAGTTTTTC
GAAGTTTTTGTGTTGAGGCATTTCACCCTTGTGAGACTGTTCCAGGTGGA
GAGACGCTGGCTCCACCAAAAACTACCCTAAGGAACTATCTTCGGACTCT
GTTGTTCCACGAGTTGATCGAGTTTGGGGAAGGCTTAGTGGTACCGCAGG
CGTTAACATTTTTATTTCAAAGATCGAAAATCACTTGTGCAGTAGGTCTC
GCCAAATCTCGGAATATGCTCTTTTGTATTGCCGATTTCACAGCTTTAAA
TCAGTACGGTAAGTTTGCGATAGTGGAGATAAATTACGGCTCATTCTTAA
TGGTGGAATGTTGGGTCATGAGACTTCGTTCACTATTCGTGGTTTGTCAG
CATGCGTGTAGCAAGGGGTGGGGAGATAAGAGAGAGCGTTATAAATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6660:27036..27533+

>mRNA_F-serratus_M_contig6660.17663.1 ID=mRNA_F-serratus_M_contig6660.17663.1|Name=mRNA_F-serratus_M_contig6660.17663.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig6660:27036..27533+ (Fucus serratus male)
ATGGCAACATACCCGCCTTTAGTTTTTCGAAGTTTTTGTGTTGAGGCATT
TCACCCTTGTGAGACTGTTCCAGGTGGAGAGACGCTGGCTCCACCAAAAA
CTACCCTAAGGAACTATCTTCGGACTCTGTTGTTCCACGAGTTGATCGAG
TTTGGGGAAGGCTTAGTGGTACCGCAGGCGTTAACATTTTTATTTCAAAG
ATCGAAAATCACTTGTGCAGTAGGTCTCGCCAAATCTCGGAATATGCTCT
TTTGTATTGCCGATTTCACAGCTTTAAATCAGTACGGTAAGTTTGCGATA
GTGGAGATAAATTACGGCTCATTCTTAATGGTGGAATGTTGGGTCATGAG
ACTTCGTTCACTATTCGTGGTTTGTCAGCATGCGTGTAGCAAGGGGTGGG
GAGATAAGAGAGAGCGTTATAAATGAATGGCAACATACCCGCCTTTAGTT
TTTCGAAGTTTTTGTGTTGAGGCATTTCACCCTTGTGAGACTGTTCCAGG
TGGAGAGACGCTGGCTCCACCAAAAACTACCCTAAGGAACTATCTTCGGA
CTCTGTTGTTCCACGAGTTGATCGAGTTTGGGGAAGGCTTAGTGGTACCG
CAGGCGTTAACATTTTTATTTCAAAGATCGAAAATCACTTGTGCAGTAGG
TCTCGCCAAATCTCGGAATATGCTCTTTTGTATTGCCGATTTCACAGCTT
TAAATCAGTACGGTAAGTTTGCGATAGTGGAGATAAATTACGGCTCATTC
TTAATGGTGGAATGTTGGGTCATGAGACTTCGTTCACTATTCGTGGTTTG
TCAGCATGCGTGTAGCAAGGGGTGGGGAGATAAGAGAGAGCGTTATAAAT
GA
back to top