mRNA_F-serratus_M_contig6646.17653.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6646.17653.1
Unique NamemRNA_F-serratus_M_contig6646.17653.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6646.17653.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.760e-6
Identity = 25/36 (69.44%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   88 RRGVLEAQLFLPEVLNVNVPHAMVSALRKEALAISE 195
            +RGV+EAQL LPEV++VNV HAMVSA+R++ALA+S+
Sbjct: 2770 KRGVMEAQLSLPEVVDVNVTHAMVSAVRRKALALSK 2805
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BLAST of mRNA_F-serratus_M_contig6646.17653.1 vs. uniprot
Match: D8LME3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME3_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.150e-5
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   91 RGVLEAQLFLPEVLNVNVPHAMVSALRKEALAISE 195
            RGV+E QL LPEV++VNV HAMVSA+R++ALA+S+
Sbjct:  210 RGVMETQLSLPEVVDVNVTHAMVSAVRRKALALSK 244
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6646.17653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE4.760e-669.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME3_ECTSI2.150e-568.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6646contigF-serratus_M_contig6646:23179..24754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932042.5799685-CDS-F-serratus_M_contig6646:23178..233731622932042.5799685-CDS-F-serratus_M_contig6646:23178..23373Fucus serratus maleCDSF-serratus_M_contig6646 23179..23373 +
1690964117.029969-CDS-F-serratus_M_contig6646:23178..233731690964117.029969-CDS-F-serratus_M_contig6646:23178..23373Fucus serratus maleCDSF-serratus_M_contig6646 23179..23373 +
1622932042.6128976-CDS-F-serratus_M_contig6646:24671..247521622932042.6128976-CDS-F-serratus_M_contig6646:24671..24752Fucus serratus maleCDSF-serratus_M_contig6646 24672..24752 +
1690964117.0422516-CDS-F-serratus_M_contig6646:24671..247521690964117.0422516-CDS-F-serratus_M_contig6646:24671..24752Fucus serratus maleCDSF-serratus_M_contig6646 24672..24752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6646.17653.1prot_F-serratus_M_contig6646.17653.1Fucus serratus malepolypeptideF-serratus_M_contig6646 23179..24752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6646.17653.1

>prot_F-serratus_M_contig6646.17653.1 ID=prot_F-serratus_M_contig6646.17653.1|Name=mRNA_F-serratus_M_contig6646.17653.1|organism=Fucus serratus male|type=polypeptide|length=92bp
EELPVAIAVHRDEETNNDPMAQEGEERRTRRGVLEAQLFLPEVLNVNVPH
AMVSALRKEALAISERTQSRRGNAQNLSPQWSCHRFDPRWIF
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mRNA from alignment at F-serratus_M_contig6646:23179..24754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6646.17653.1 ID=mRNA_F-serratus_M_contig6646.17653.1|Name=mRNA_F-serratus_M_contig6646.17653.1|organism=Fucus serratus male|type=mRNA|length=1576bp|location=Sequence derived from alignment at F-serratus_M_contig6646:23179..24754+ (Fucus serratus male)
GAAGAGCTCCCCGTTGCGATCGCCGTGCACCGCGACGAGGAGACCAACAA
TGACCCGATGGCTCAAGAGGGCGAGGAGAGGCGTACAAGGCGAGGCGTTT
TGGAAGCGCAGCTGTTCCTGCCGGAGGTGCTGAACGTGAACGTGCCGCAC
GCCATGGTCTCAGCGCTCCGAAAGGAGGCCTTGGCCATCTCCGAGGTCGG
TGATATACAGTACGATTCGGTGTGGTGTTTTTGATGAACTCCAGCGGAGG
CTGTGGCTTGCACGGGGTTGGTTGGGAGAAGGTTAGGGAGTACAACAGTT
ATGTTGTGTTGGGGGTTACTATTTTATGTTTTTATTTGGGAGGCTGAGAG
GAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGCTAGTGTTTTGGGTTAATG
TACATATGAACATGTGTGATCAAACGCCTGGGAATGGTGGACTAAGTAAA
AATAGCGTTCCTTTTCTTCGCCTTTCGCCAACGATATGTTTTTTCCCCTA
GCAGAGGCTTTCCTTGCTTTGTCTGTTTTTTTTGTATTTGTTTGTTGGTT
TGTTTTGTTTTGTTTTGTTTTGTGTCTGCCTCAGTTCTTAAATCATCCAA
TACACCCACCGACTATTAATAACTACTCGTCTTCTGTACACACATAAACC
CGCTGCTGCTGCTGCCACCGTGTGCGGATATTGTTTCCGTTTTTCTGTTC
GCTCTGAGTACCTTGTGCCCCCCCCCCCCCCTGCTTTCTTGTTACTCTCT
ATTAATAGGTTATCTGGGTTGGCAGGTACTGAACCAACCCCTTCTTTTCT
ACATATTTTATCTTTCCACCCAAGTCTCCCCCGTTTCCCACATGGCGTCT
ACAACTATTTTGCGGTTTCTTGCGCTTCTTTGTGAGTGAGTGTGTGTGTG
TGTGTTTATTAAATTCCACATAACCGCGCAATCCGGCCCTGTCATTCTAG
TCATTCTATGCCACTCGCATTGATCCTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGCTTGTGCATATGTGTGTGTGTATATATATAAAATTGCACATAGC
CACGCAATCCGTCTCTGTCATCCTGTAGCCGCCATTCTATGACACTCGCT
TTAACCCTCCCAGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGGGGGGGG
GTCGGGAAAGGGCGAGGCCCTGAAAATCCTCCCCGCTGGTGTCCGTTTTC
TCTCTCAGCCTCTCTCAGTCTCTCTCTGGTTGCTCCCACTTTTCTCCCAT
TTTTTCTTGGTTGTGCTTGTCTTATTATAGCTCGCCGCTTCGTCGCTGCC
AACTGCTTTACGATGGTGAGGGATGAATACCTTACCGTACGATGGTGATG
ATCTTGTCTTTCTTGAATTTCCACCGAGCTGTCGCTGTCCTTTATCCACC
GGACTCTCCCGTCCCCCCCCCTGGCCCAACTCCCCACATTTCGGGTGTGT
TCATTACCCATGCTTCCGTCGGGGACCTGACCACACCACACAGAGGACGC
AATCAAGGAGAGGAAACGCGCAGAACCTCTCACCCCAGTGGTCATGTCAT
CGTTTCGATCCCCGCTGGATCTTTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6646:23179..24754+

>mRNA_F-serratus_M_contig6646.17653.1 ID=mRNA_F-serratus_M_contig6646.17653.1|Name=mRNA_F-serratus_M_contig6646.17653.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig6646:23179..24754+ (Fucus serratus male)
GAAGAGCTCCCCGTTGCGATCGCCGTGCACCGCGACGAGGAGACCAACAA
TGACCCGATGGCTCAAGAGGGCGAGGAGAGGCGTACAAGGCGAGGCGTTT
TGGAAGCGCAGCTGTTCCTGCCGGAGGTGCTGAACGTGAACGTGCCGCAC
GCCATGGTCTCAGCGCTCCGAAAGGAGGCCTTGGCCATCTCCGAGGAAGA
GCTCCCCGTTGCGATCGCCGTGCACCGCGACGAGGAGACCAACAATGACC
CGATGGCTCAAGAGGGCGAGGAGAGGCGTACAAGGCGAGGCGTTTTGGAA
GCGCAGCTGTTCCTGCCGGAGGTGCTGAACGTGAACGTGCCGCACGCCAT
GGTCTCAGCGCTCCGAAAGGAGGCCTTGGCCATCTCCGAGAGGACGCAAT
CAAGGAGAGGAAACGCGCAGAACCTCTCACCCCAGTGGTCATGTCATCGT
TTCGATCCCCGCTGGATCTTTAGGACGCAATCAAGGAGAGGAAACGCGCA
GAACCTCTCACCCCAGTGGTCATGTCATCGTTTCGATCCCCGCTGGATCT
TT
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