mRNA_F-serratus_M_contig664.17646.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig664.17646.1
Unique NamemRNA_F-serratus_M_contig664.17646.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.510e-71
Identity = 142/359 (39.55%), Postives = 205/359 (57.10%), Query Frame = 1
Query:    1 GAVGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG--------KEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYG-GQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            G + +L  ++YGL QA R W+      +   GF Q   D CVFR + +G   + +VV VD+I +  +++   D+F  +L     +K++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G         EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T   GIT+  G   GL MEV+ D+D+ S    RRSVSG ++M   G ISW+    +       T+EAEYV+L++V+K VLFLRQV  FM P   +  +  VFEDN+ AI+LA N  ++  +K +DV+HH +R+    +   + +V S  QHAD LTK
Sbjct:   66 GMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK--CVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 420          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 2.210e-70
Identity = 140/359 (39.00%), Postives = 204/359 (56.82%), Query Frame = 1
Query:    1 GAVGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG--------KEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYG-GQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            G + +L  ++YGL QA R W+      + A GFEQ   D CVFR + DG   +++VV VD+I     ++   D+F A+L +   +K++G+  +Y GC   RN++   L   Q  + + +   + V     +P +SG         E   +FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P L H  A M I  Y   T  +GI++  G   G  ++ Y D+DF S    RRSVSG ++    GA+SW+    +       T+EAEYVAL +VVK +LFLRQ+  FM P + +  +  VFEDN+ AI+LA N  ++  +K +DV+HH +R+  + +   V +V S  Q AD LTK
Sbjct:   90 GMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQK--CVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTK 444          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 9.370e-70
Identity = 142/359 (39.55%), Postives = 205/359 (57.10%), Query Frame = 1
Query:    1 GAVGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG--------KEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYG-GQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            G + +L  ++YGL QA R W+      +   GF Q   D CVFR + +G   + +VV VD+I +  +++   D+F  +L     +K++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G         EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T   GIT+  G   GL MEV+ D+D+ S    RRSVSG ++M   G ISW+    +       T+EAEYV+L++V+K VLFLRQV  FM P   +  +  VFEDN+ AI+LA N  ++  +K +DV+HH +R+    +   + +V S  QHAD LTK
Sbjct:  240 GMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK--CVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 594          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.250e-68
Identity = 145/356 (40.73%), Postives = 207/356 (58.15%), Query Frame = 1
Query:    7 VGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASGK--------EEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYGGQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            + + E AIYGL Q+GR W     D +   GFEQ K DPCVFRK+VD    M++V+ VD+IL    D+   +  +A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK  ++IPA  G         EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+  GITY  +G GL + VY D+ +    D RRSVSG    +    +S        ++ +  ++EAEY+A  E VK  LF+R V  F+ P    G+   V EDN+ AI L  N  +S RTK +DV++H +R    +    V +V + +QHADLLTK
Sbjct:  878 IAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVS--HGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1227          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 4.380e-68
Identity = 145/356 (40.73%), Postives = 207/356 (58.15%), Query Frame = 1
Query:    7 VGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASGK--------EEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYGGQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            + + E AIYGL Q+GR W     D +   GFEQ K DPCVFRK+VD    M++V+ VD+IL    D+   +  +A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK  ++IPA  G         EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+  GITY  +G GL + VY D+ +    D RRSVSG    +    +S        ++ +  ++EAEY+A  E VK  LF+R V  F+ P    G+   V EDN+ AI L  N  +S RTK +DV++H +R    +    V +V + +QHADLLTK
Sbjct: 1257 IAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVS--HGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1606          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 4.420e-68
Identity = 145/356 (40.73%), Postives = 207/356 (58.15%), Query Frame = 1
Query:    7 VGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASGK--------EEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYGGQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            + + E AIYGL Q+GR W     D +   GFEQ K DPCVFRK+VD    M++V+ VD+IL    D+   +  +A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK  ++IPA  G         EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+  GITY  +G GL + VY D+ +    D RRSVSG    +    +S        ++ +  ++EAEY+A  E VK  LF+R V  F+ P    G+   V EDN+ AI L  N  +S RTK +DV++H +R    +    V +V + +QHADLLTK
Sbjct: 1277 IAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVS--HGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1626          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 4.460e-68
Identity = 145/356 (40.73%), Postives = 207/356 (58.15%), Query Frame = 1
Query:    7 VGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASGK--------EEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYGGQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            + + E AIYGL Q+GR W     D +   GFEQ K DPCVFRK+VD    M++V+ VD+IL    D+   +  +A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK  ++IPA  G         EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+  GITY  +G GL + VY D+ +    D RRSVSG    +    +S        ++ +  ++EAEY+A  E VK  LF+R V  F+ P    G+   V EDN+ AI L  N  +S RTK +DV++H +R    +    V +V + +QHADLLTK
Sbjct: 1420 IAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVS--HGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1769          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 5.800e-67
Identity = 135/359 (37.60%), Postives = 207/359 (57.66%), Query Frame = 1
Query:    1 GAVGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG--------KEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYG-GQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            G + +L  ++YGL QA R W       + A GFEQ   D CVFR V DGE  +++VV VD+I      +   D+F  +LG+   +K +G+  +Y GC+  R+R+A  L   Q  Y + + +R  V+    IP  +          E   ++P+R  +G+L+W A +TRPDIA AVRAVAR+C  P L H +A + I  Y + T  +GI++  G   G  +  + D+D+ S    RRSVSG V+M A GAI+W+    +  +T S T++AEYVA++++ K +LFLR+V  FM P      +  ++EDNE AI++A +  ++  +K +DV+HH +R   D +   + +V S+ QHAD LTK
Sbjct:   12 GKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDIFAVGTKERC-DQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLWDSDVNEPSVEYPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFS-KTQKCVTLS-TTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIP-LYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 366          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.800e-66
Identity = 141/359 (39.28%), Postives = 205/359 (57.10%), Query Frame = 1
Query:    1 GAVGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG--------KEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYG-GQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            G + +L  ++YGL QA R W+      +   GF Q   D CVFR + +G   + +VV VD+I +  +++   D+F  +L     +K++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G         EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T   GIT+  G   GL MEV+ D+D+ S    RRSVSG ++M   G ISW+    +       T+EAEYV+L++V+K VLFLRQV  FM P   +  +  VFEDN+ AI+LA N  ++  +K +DV+HH +R+    +   + +V S  QHA+ LTK
Sbjct:  761 GMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQK--CVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIP-VFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTK 1115          
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.980e-66
Identity = 146/356 (41.01%), Postives = 207/356 (58.15%), Query Frame = 1
Query:    7 VGRLENAIYGLVQAGRCWNKKFCDDMTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVAELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKKEAKIPAASG------KEEIK--KFPYREAVGALMWTATMTRPDIACAVRAVARFCDNPGLAHKKAVMKIFQYLIHTK*WGITYGGQGCGLCMEVYTDSDFGSCLDTRRSVSGAVLMLAKGAISWYRIPARPNLTASGTSEAEYVALSEVVKNVLFLRQVQEFMEPSMRVGAVNNVFEDNEEAIKLATNKHASRRTKLVDVKHHLVRDASDAQRARVAYVRSEDQHADLLTK 1050
            + + E AIYGL Q+GR W     D +   GFEQ K DPCVFRK+VD    M++V+ VD+IL    D+   +  +A L +KF  K++G+  ++ GC I R+  A  L+  Q  Y++SMV+RFDVK  ++IPA  G      +E+ K  ++P REAVG++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+  GITY  +G GL + VY D+ +    D RRSVS     +  G +  +   AR  ++ S T EAEY+A  E VK  LF+R V  F+ P  R G+   V EDN+ AI L  N  +S   K +DV+ H +R    +    V +V + +QHAD+LT+
Sbjct:  469 IAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARYADTED-RRSVSRLATTVG-GTVVSHGSKARSIVSLSST-EAEYIAAGEGVKEALFVRAVLSFVAPETR-GSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQ 818          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig664.17646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.510e-7139.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE2.210e-7039.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE9.370e-7039.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.250e-6840.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.380e-6840.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.420e-6840.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.460e-6840.73Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JWK8_9PHAE5.800e-6737.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.800e-6639.28Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JQN6_9PHAE2.980e-6641.01Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig664contigF-serratus_M_contig664:279033..280373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score102.8
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons4
Model size1050
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig664.17646.1prot_F-serratus_M_contig664.17646.1Fucus serratus malepolypeptideF-serratus_M_contig664 279114..279668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.9584687-UTR-F-serratus_M_contig664:279032..2791131622932041.9584687-UTR-F-serratus_M_contig664:279032..279113Fucus serratus maleUTRF-serratus_M_contig664 279033..279113 +
1690964116.8205123-UTR-F-serratus_M_contig664:279032..2791131690964116.8205123-UTR-F-serratus_M_contig664:279032..279113Fucus serratus maleUTRF-serratus_M_contig664 279033..279113 +
1622932042.0092242-UTR-F-serratus_M_contig664:279668..2798081622932042.0092242-UTR-F-serratus_M_contig664:279668..279808Fucus serratus maleUTRF-serratus_M_contig664 279669..279808 +
1690964116.853263-UTR-F-serratus_M_contig664:279668..2798081690964116.853263-UTR-F-serratus_M_contig664:279668..279808Fucus serratus maleUTRF-serratus_M_contig664 279669..279808 +
1622932042.0236082-UTR-F-serratus_M_contig664:280034..2800571622932042.0236082-UTR-F-serratus_M_contig664:280034..280057Fucus serratus maleUTRF-serratus_M_contig664 280035..280057 +
1690964116.8640528-UTR-F-serratus_M_contig664:280034..2800571690964116.8640528-UTR-F-serratus_M_contig664:280034..280057Fucus serratus maleUTRF-serratus_M_contig664 280035..280057 +
1622932042.0407603-UTR-F-serratus_M_contig664:280077..2803731622932042.0407603-UTR-F-serratus_M_contig664:280077..280373Fucus serratus maleUTRF-serratus_M_contig664 280078..280373 +
1690964116.8749118-UTR-F-serratus_M_contig664:280077..2803731690964116.8749118-UTR-F-serratus_M_contig664:280077..280373Fucus serratus maleUTRF-serratus_M_contig664 280078..280373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.9732933-CDS-F-serratus_M_contig664:279113..2794401622932041.9732933-CDS-F-serratus_M_contig664:279113..279440Fucus serratus maleCDSF-serratus_M_contig664 279114..279440 +
1690964116.8331397-CDS-F-serratus_M_contig664:279113..2794401690964116.8331397-CDS-F-serratus_M_contig664:279113..279440Fucus serratus maleCDSF-serratus_M_contig664 279114..279440 +
1622932041.993089-CDS-F-serratus_M_contig664:279485..2796681622932041.993089-CDS-F-serratus_M_contig664:279485..279668Fucus serratus maleCDSF-serratus_M_contig664 279486..279668 +
1690964116.8429968-CDS-F-serratus_M_contig664:279485..2796681690964116.8429968-CDS-F-serratus_M_contig664:279485..279668Fucus serratus maleCDSF-serratus_M_contig664 279486..279668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig664.17646.1

>prot_F-serratus_M_contig664.17646.1 ID=prot_F-serratus_M_contig664.17646.1|Name=mRNA_F-serratus_M_contig664.17646.1|organism=Fucus serratus male|type=polypeptide|length=170bp
MTATGFEQAKVDPCVFRKVVDGEAKMVVVVLVDNILTHAKDQATMDRFVA
ELGQKFRLKDMGDAGYYKGCHITRNRKARELKFDQHLYVESMVKRFDVKK
EAKIPAASGKEEIKKFPYREAVGALMWTATMTRPDIACAVRAVARFCDNP
GLAHKKAVMKIFQYLIHTK*
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mRNA from alignment at F-serratus_M_contig664:279033..280373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig664.17646.1 ID=mRNA_F-serratus_M_contig664.17646.1|Name=mRNA_F-serratus_M_contig664.17646.1|organism=Fucus serratus male|type=mRNA|length=1341bp|location=Sequence derived from alignment at F-serratus_M_contig664:279033..280373+ (Fucus serratus male)
GGGGCAGTGGGACGGCTTGAAAATGCCATTTACGGACTCGTGCAGGCGGG GAGGTGCTGGAATAAAAAGTTCTGTGACGACATGACGGCGACTGGATTCG AGCAGGCAAAGGTGGACCCGTGCGTGTTCCGTAAGGTCGTTGACGGTGAG GCAAAGATGGTGGTGGTCGTACTCGTAGACAACATCCTTACCCACGCCAA AGACCAAGCGACGATGGATAGATTTGTGGCCGAGCTTGGGCAGAAGTTTA GATTGAAGGACATGGGGGACGCTGGGTACTACAAGGGCTGTCACATCACC AGGAACCGCAAGGCGCGCGAGTTGAAGTTCGACCAACATCTGTACGTGGA GTCAATGGTAAAAAGATTTGACGTCAAGAAGGAAGCTAAGATACCGGCTG CGTCGGGGGTGCCGACGCTCTCAAAGGCGGATGAACCGCATAACCCATAG GAGAAGGAAGAAATAAAGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGCT CATGTGGACGGCAACGATGACACGGCCGGATATTGCGTGCGCCGTGCGCG CCGTGGCCAGGTTCTGCGACAACCCTGGACTGGCACACAAGAAAGCAGTG ATGAAGATCTTCCAGTATCTCATTCACACGAAATAATGGGGGATTACGTA CGGTGGACAGGGCTGTGGACTTTGCATGGAAGTATATACGGATTCGGATT TCGGATCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTTGATG TTGGCCAAGGGAGCGATCAGTTGGTAGTCAAGGATGCAAGACCAGTTCAA CGATTGGGGGGGGGGGGGGTGTAACACATTTGTCCCCGTTTTGGGAGGGA ACGGCACGAAAAAAGCCCCTACCGGGGACATATTTGACCAACCCCCTGGT CAAATGCATTAAATTCGGGGCAAGCTCGCCGACCATGTAGGGGACCATGC AGTCTCATCCCCGGAAGGGGATGTTTTGGTGATGTCCCCGGGGACAAAAC AGTCGTATCCCCGCCCGCCCCAACTGTTGAACCCCTCGCAAGAAGTAACA GCATCAGGTACCTCGGAGGCAGAATACGTTGCCTTATCAGAGGTAGTAAA GAATGTACTATTTTTGAGACAGGTGCAGGAATTCATGGAACCGTCGATGA GGGTCGGTGCAGTAAATAATGTGTTCGAAGATAACGAGGAGGCCATCAAG CTGGCCACAAACAAGCATGCTAGCCGTAGGACTAAGCTCGTGGATGTGAA GCATCATCTAGTAAGGGACGCGTCTGACGCGCAAAGGGCAAGAGTAGCGT ACGTGAGGTCGGAAGATCAGCACGCGGATTTGCTCACAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig664:279033..280373+

>mRNA_F-serratus_M_contig664.17646.1 ID=mRNA_F-serratus_M_contig664.17646.1|Name=mRNA_F-serratus_M_contig664.17646.1|organism=Fucus serratus male|type=CDS|length=1020bp|location=Sequence derived from alignment at F-serratus_M_contig664:279033..280373+ (Fucus serratus male)
ATGACGGCGACTGGATTCGAGCAGGCAAAGGTGGACCCGTGCGTGTTCCG
TAAGGTCGTTGACGGTGAGGCAAAGATGGTGGTGGTCGTACTCGTAGACA
ACATCCTTACCCACGCCAAAGACCAAGCGACGATGGATAGATTTGTGGCC
GAGCTTGGGCAGAAGTTTAGATTGAAGGACATGGGGGACGCTGGGTACTA
CAAGGGCTGTCACATCACCAGGAACCGCAAGGCGCGCGAGTTGAAGTTCG
ACCAACATCTGTACGTGGAGTCAATGGTAAAAAGATTTGACGTCAAGAAG
GAAGCTAAGATACCGGCTGCGTCGGGGATGACGGCGACTGGATTCGAGCA
GGCAAAGGTGGACCCGTGCGTGTTCCGTAAGGTCGTTGACGGTGAGGCAA
AGATGGTGGTGGTCGTACTCGTAGACAACATCCTTACCCACGCCAAAGAC
CAAGCGACGATGGATAGATTTGTGGCCGAGCTTGGGCAGAAGTTTAGATT
GAAGGACATGGGGGACGCTGGGTACTACAAGGGCTGTCACATCACCAGGA
ACCGCAAGGCGCGCGAGTTGAAGTTCGACCAACATCTGTACGTGGAGTCA
ATGGTAAAAAGATTTGACGTCAAGAAGGAAGCTAAGATACCGGCTGCGTC
GGGGAAGGAAGAAATAAAGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGC
TCATGTGGACGGCAACGATGACACGGCCGGATATTGCGTGCGCCGTGCGC
GCCGTGGCCAGGTTCTGCGACAACCCTGGACTGGCACACAAGAAAGCAGT
GATGAAGATCTTCCAGTATCTCATTCACACGAAATAAAAGGAAGAAATAA
AGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCAACG
ATGACACGGCCGGATATTGCGTGCGCCGTGCGCGCCGTGGCCAGGTTCTG
CGACAACCCTGGACTGGCACACAAGAAAGCAGTGATGAAGATCTTCCAGT
ATCTCATTCACACGAAATAA
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