mRNA_F-serratus_M_contig664.17648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig664.17648.1
Unique NamemRNA_F-serratus_M_contig664.17648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig664.17648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig664contigF-serratus_M_contig664:294536..297221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1856
Cds size1854
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig664.17648.1prot_F-serratus_M_contig664.17648.1Fucus serratus malepolypeptideF-serratus_M_contig664 294537..297221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.6140995-CDS-F-serratus_M_contig664:294536..2951751622932041.6140995-CDS-F-serratus_M_contig664:294536..295175Fucus serratus maleCDSF-serratus_M_contig664 294537..295175 -
1690964116.6921334-CDS-F-serratus_M_contig664:294536..2951751690964116.6921334-CDS-F-serratus_M_contig664:294536..295175Fucus serratus maleCDSF-serratus_M_contig664 294537..295175 -
1622932041.6284816-CDS-F-serratus_M_contig664:295605..2956681622932041.6284816-CDS-F-serratus_M_contig664:295605..295668Fucus serratus maleCDSF-serratus_M_contig664 295606..295668 -
1690964116.7047691-CDS-F-serratus_M_contig664:295605..2956681690964116.7047691-CDS-F-serratus_M_contig664:295605..295668Fucus serratus maleCDSF-serratus_M_contig664 295606..295668 -
1622932041.644795-CDS-F-serratus_M_contig664:296051..2965941622932041.644795-CDS-F-serratus_M_contig664:296051..296594Fucus serratus maleCDSF-serratus_M_contig664 296052..296594 -
1690964116.715822-CDS-F-serratus_M_contig664:296051..2965941690964116.715822-CDS-F-serratus_M_contig664:296051..296594Fucus serratus maleCDSF-serratus_M_contig664 296052..296594 -
1622932041.6635861-CDS-F-serratus_M_contig664:296612..2972211622932041.6635861-CDS-F-serratus_M_contig664:296612..297221Fucus serratus maleCDSF-serratus_M_contig664 296613..297221 -
1690964116.727764-CDS-F-serratus_M_contig664:296612..2972211690964116.727764-CDS-F-serratus_M_contig664:296612..297221Fucus serratus maleCDSF-serratus_M_contig664 296613..297221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig664.17648.1

>prot_F-serratus_M_contig664.17648.1 ID=prot_F-serratus_M_contig664.17648.1|Name=mRNA_F-serratus_M_contig664.17648.1|organism=Fucus serratus male|type=polypeptide|length=618bp
SGWGQPGLANGEGETWGMSSNLQDEQRQRGSGSYAEGPNDWGDAAAGMQS
KGNNPSIQDQRRKPGWVSPGAPDAFEANGGDVGGRVTSRGERGDRRQSPP
RPRGAPPVHRKGRGTPSSRERRGEDGGGRQGSSSGGRNDRNQTAKPPASL
REPTAACGDGTGWGEPNSARTVDEEVGGWGATEEVGSGLQAAAISTASAR
SNLHPPRSLPSALTADAKQWTGANRSREDDANAAAAISTLTSSAALRPAL
SDTATATPTTTAAGIAAGAHVAFGEETAGCAQDAFPMNVTAAGEVGAGPA
GAAVVAPGVEFGVGVNGSGAVPLHLQMPSFVPPPGGGGGVGGSLGSSGFV
EGAGIETLMPPLSHLPPDQHAMLLHAHHQHLVAQIQMQRAQIYQMQQHAQ
RVQKHEELVRRQRVQNQLVVDYVGAQGLEVQQHLQHPLRKSDADEREGEW
RRRQGKETQDGSQPEDARSRQQHQHQHRQQQGTREDDVAREPLTNDARSS
SSPSHNRFDGSRSIRSNATTNGKSGGAAAGPRGYGPGAPRPAAPPSTLLA
PIPGTSSSPSVVRLGSPEARGDSSPHLLGGQSMPLPQVVPGASAVGGGGG
SGGGVPVAGNGLMPVQLG
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mRNA from alignment at F-serratus_M_contig664:294536..297221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig664.17648.1 ID=mRNA_F-serratus_M_contig664.17648.1|Name=mRNA_F-serratus_M_contig664.17648.1|organism=Fucus serratus male|type=mRNA|length=2686bp|location=Sequence derived from alignment at F-serratus_M_contig664:294536..297221- (Fucus serratus male)
TCTGGGTGGGGGCAGCCGGGCCTGGCGAACGGAGAGGGGGAAACGTGGGG
CATGTCAAGCAATCTCCAGGACGAACAAAGACAGCGTGGTTCTGGCAGCT
ATGCAGAGGGGCCCAACGACTGGGGCGATGCGGCCGCCGGCATGCAGAGC
AAGGGGAACAACCCCTCGATCCAGGATCAACGACGGAAGCCCGGATGGGT
CAGCCCTGGTGCTCCCGATGCCTTTGAGGCCAACGGTGGGGACGTCGGCG
GGCGTGTGACGTCGCGCGGCGAGAGAGGTGACAGACGTCAAAGCCCGCCT
CGTCCACGAGGGGCGCCCCCCGTCCACAGGAAAGGGCGTGGCACGCCCTC
TTCGAGAGAGCGGAGAGGAGAGGATGGCGGCGGCCGTCAGGGTTCATCGT
CTGGTGGACGAAATGACCGGAACCAGACTGCGAAGCCGCCAGCTTCATTA
CGTGAACCAACCGCCGCTTGTGGCGACGGTACCGGTTGGGGGGAGCCGAA
TTCCGCCAGGACGGTAGATGAAGAGGTAGGTGGATGGGGCGCGACAGAAG
AAGTTGGCTCCGGTCTGCAAGCGGCCGCAATTTCGACCGCCTCGGCGCGG
TCGAACCTGAAGCAGACAGCTGCCGCCCATCCCCCTCGTTCATTGCCTTC
CGCTCTGACCGCTGACGCCAAGCAGTGGACGGGTGCAAACCGCAGTAGGG
AAGACGACGCGAACGCGGCCGCGGCAATCTCGACGTTGACCTCCTCTGCT
GCACTTCGCCCGGCTCTCTCCGACACCGCCACTGCCACCCCCACCACCAC
CGCTGCTGGCATCGCAGCTGGCGCACATGTTGCTTTCGGGGAAGAGACCG
CCGGGTGCGCGCAGGACGCGTTTCCGATGAATGTGACTGCCGCAGGGGAA
GTGGGGGCGGGGCCGGCAGGAGCAGCAGTAGTGGCGCCTGGTGTTGAGTT
TGGGGTCGGCGTTAACGGATCGGGCGCGGTTCCCCTGCACCTGCAGATGC
CTAGCTTTGTGCCCCCCCCCGGCGGTGGTGGTGGCGTTGGTGGTTCCTTG
GGATCCTCGGGCTTTGTGGAGGGTGCGGGAATCGAAACGCTCATGCCACC
GCTGTCGCACCTTCCGCCGGACCAACACGCCATGCTGCTTCACGCGCATC
ATCAGCATCTCGTGGCGCAGGTGAGGGGAGTCGTGTCCTTTCCCTCTCCG
CTGCTTTGCGGCGATGTAACCGTTCGTCCCGTACGCGGCCGTTTGGGGTT
GGGTTCGATGCACGGGGACCAGAGGCATGCGCGCGTGTTTCGCGTTGAGT
TGTGTTTTATTCACCATGAGTTTTTGTGCGAGTTCTGTTTGGATCTTGGT
AGAGAGCCTGAGGTTTTAATGTCAGAAGGGGGAGGGGGGGGGTGCATCTC
GAAGGCTGTGATGCCGAGGATTGCCGAGCTTGTTTCCGGTATCGTATCTG
CTACACATCGACGAGGTGCTGCGTAATTATCCTTATACTATTAATAATAC
ACAACGTTCTCCATCACGCGCGGGCTTTGGTCCACGGAACTATCCTTGGC
CAGATACAAATGCAACGGGCGCAGATCTACCAAATGCAGCAACATGCTCA
GCGGGTGCAGAAACATGTGAGCTGGGTCTTGGTCAGGGTCTCGGGCTTTG
ACTACATGGTCTGCTTGCGAAACACAAACGAGGGGCATCAGCGCAGCTAA
TCAGGGTGTTGGTTTGGAAGAGGAGGGTGGAGTTGGACGTGGAGCGGGTT
GGGCTTCTGAGATCCTCATTTTATTTTGGAAGTCTTCGCCGCGGTTAGAC
ACTTGGAATCACAGAGGAGAGGGGTGCGGGGGATACAAATCAACAAAAAA
AATAACATCCGCGCCTTCATGAAACGATTTTTTCCCACATACATGTACAT
GTCGTGTGCTACGTACCGTGTGTCGCCACAGACCTTCCCACCCATTGACG
TACCTTATGTCGTTTTGCGGTTTTGCCAAAAAAATGGCGTTTCTTGTGGT
GTGTTTTGTTTTGATTTACCCTTGAACCTCGCTCGGACGCGGGAAGGAGG
AACTCGTGAGGCGGCAGCGGGTGCAGAACCAACTCGTGGTAGATTATGTG
GGCGCTCAAGGCCTTGAGGTGCAGCAACATCTGCAACATCCGTTGAGGAA
GAGTGACGCCGATGAGAGAGAGGGAGAATGGCGGCGTCGACAGGGAAAAG
AGACGCAGGACGGATCGCAGCCTGAAGACGCCCGATCTCGCCAGCAACAC
CAGCACCAACATCGTCAACAGCAAGGCACGCGAGAAGACGACGTTGCGCG
CGAGCCCCTTACGAACGACGCACGTTCCTCGTCCTCTCCCTCCCACAATC
GGTTTGACGGTAGCAGGAGCATCCGCAGCAATGCCACGACCAACGGCAAG
AGCGGAGGTGCGGCAGCGGGACCGAGGGGTTATGGACCCGGCGCCCCCCG
CCCCGCCGCGCCCCCCTCAACGCTGCTGGCTCCGATCCCCGGCACGTCGT
CTAGCCCCTCGGTGGTGCGTTTAGGGTCCCCCGAGGCGCGGGGTGACAGC
TCTCCCCACCTGCTGGGGGGGCAGAGCATGCCACTCCCTCAGGTAGTGCC
TGGAGCGTCTGCGGTTGGTGGTGGCGGAGGTAGCGGTGGAGGCGTTCCGG
TAGCGGGAAACGGGCTGATGCCTGTGCAATTGGGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig664:294536..297221-

>mRNA_F-serratus_M_contig664.17648.1 ID=mRNA_F-serratus_M_contig664.17648.1|Name=mRNA_F-serratus_M_contig664.17648.1|organism=Fucus serratus male|type=CDS|length=3708bp|location=Sequence derived from alignment at F-serratus_M_contig664:294536..297221- (Fucus serratus male)
TCTGGGTGGGGGCAGCCGGGCCTGGCGAACGGAGAGGGGGAAACGTGGGG
CATGTCAAGCAATCTCCAGGACGAACAAAGACAGCGTGGTTCTGGCAGCT
ATGCAGAGGGGCCCAACGACTGGGGCGATGCGGCCGCCGGCATGCAGAGC
AAGGGGAACAACCCCTCGATCCAGGATCAACGACGGAAGCCCGGATGGGT
CAGCCCTGGTGCTCCCGATGCCTTTGAGGCCAACGGTGGGGACGTCGGCG
GGCGTGTGACGTCGCGCGGCGAGAGAGGTGACAGACGTCAAAGCCCGCCT
CGTCCACGAGGGGCGCCCCCCGTCCACAGGAAAGGGCGTGGCACGCCCTC
TTCGAGAGAGCGGAGAGGAGAGGATGGCGGCGGCCGTCAGGGTTCATCGT
CTGGTGGACGAAATGACCGGAACCAGACTGCGAAGCCGCCAGCTTCATTA
CGTGAACCAACCGCCGCTTGTGGCGACGGTACCGGTTGGGGGGAGCCGAA
TTCCGCCAGGACGGTAGATGAAGAGGTAGGTGGATGGGGCGCGACAGAAG
AAGTTGGCTCCGGTCTGCAAGCGGCCGCAATTTCGACCGCCTCGGCGCGG
TCGAACCTGTCTGGGTGGGGGCAGCCGGGCCTGGCGAACGGAGAGGGGGA
AACGTGGGGCATGTCAAGCAATCTCCAGGACGAACAAAGACAGCGTGGTT
CTGGCAGCTATGCAGAGGGGCCCAACGACTGGGGCGATGCGGCCGCCGGC
ATGCAGAGCAAGGGGAACAACCCCTCGATCCAGGATCAACGACGGAAGCC
CGGATGGGTCAGCCCTGGTGCTCCCGATGCCTTTGAGGCCAACGGTGGGG
ACGTCGGCGGGCGTGTGACGTCGCGCGGCGAGAGAGGTGACAGACGTCAA
AGCCCGCCTCGTCCACGAGGGGCGCCCCCCGTCCACAGGAAAGGGCGTGG
CACGCCCTCTTCGAGAGAGCGGAGAGGAGAGGATGGCGGCGGCCGTCAGG
GTTCATCGTCTGGTGGACGAAATGACCGGAACCAGACTGCGAAGCCGCCA
GCTTCATTACGTGAACCAACCGCCGCTTGTGGCGACGGTACCGGTTGGGG
GGAGCCGAATTCCGCCAGGACGGTAGATGAAGAGGTAGGTGGATGGGGCG
CGACAGAAGAAGTTGGCTCCGGTCTGCAAGCGGCCGCAATTTCGACCGCC
TCGGCGCGGTCGAACCTGCATCCCCCTCGTTCATTGCCTTCCGCTCTGAC
CGCTGACGCCAAGCAGTGGACGGGTGCAAACCGCAGTAGGGAAGACGACG
CGAACGCGGCCGCGGCAATCTCGACGTTGACCTCCTCTGCTGCACTTCGC
CCGGCTCTCTCCGACACCGCCACTGCCACCCCCACCACCACCGCTGCTGG
CATCGCAGCTGGCGCACATGTTGCTTTCGGGGAAGAGACCGCCGGGTGCG
CGCAGGACGCGTTTCCGATGAATGTGACTGCCGCAGGGGAAGTGGGGGCG
GGGCCGGCAGGAGCAGCAGTAGTGGCGCCTGGTGTTGAGTTTGGGGTCGG
CGTTAACGGATCGGGCGCGGTTCCCCTGCACCTGCAGATGCCTAGCTTTG
TGCCCCCCCCCGGCGGTGGTGGTGGCGTTGGTGGTTCCTTGGGATCCTCG
GGCTTTGTGGAGGGTGCGGGAATCGAAACGCTCATGCCACCGCTGTCGCA
CCTTCCGCCGGACCAACACGCCATGCTGCTTCACGCGCATCATCAGCATC
TCGTGGCGCAGCATCCCCCTCGTTCATTGCCTTCCGCTCTGACCGCTGAC
GCCAAGCAGTGGACGGGTGCAAACCGCAGTAGGGAAGACGACGCGAACGC
GGCCGCGGCAATCTCGACGTTGACCTCCTCTGCTGCACTTCGCCCGGCTC
TCTCCGACACCGCCACTGCCACCCCCACCACCACCGCTGCTGGCATCGCA
GCTGGCGCACATGTTGCTTTCGGGGAAGAGACCGCCGGGTGCGCGCAGGA
CGCGTTTCCGATGAATGTGACTGCCGCAGGGGAAGTGGGGGCGGGGCCGG
CAGGAGCAGCAGTAGTGGCGCCTGGTGTTGAGTTTGGGGTCGGCGTTAAC
GGATCGGGCGCGGTTCCCCTGCACCTGCAGATGCCTAGCTTTGTGCCCCC
CCCCGGCGGTGGTGGTGGCGTTGGTGGTTCCTTGGGATCCTCGGGCTTTG
TGGAGGGTGCGGGAATCGAAACGCTCATGCCACCGCTGTCGCACCTTCCG
CCGGACCAACACGCCATGCTGCTTCACGCGCATCATCAGCATCTCGTGGC
GCAGATACAAATGCAACGGGCGCAGATCTACCAAATGCAGCAACATGCTC
AGCGGGTGCAGAAACATATACAAATGCAACGGGCGCAGATCTACCAAATG
CAGCAACATGCTCAGCGGGTGCAGAAACATGAGGAACTCGTGAGGCGGCA
GCGGGTGCAGAACCAACTCGTGGTAGATTATGTGGGCGCTCAAGGCCTTG
AGGTGCAGCAACATCTGCAACATCCGTTGAGGAAGAGTGACGCCGATGAG
AGAGAGGGAGAATGGCGGCGTCGACAGGGAAAAGAGACGCAGGACGGATC
GCAGCCTGAAGACGCCCGATCTCGCCAGCAACACCAGCACCAACATCGTC
AACAGCAAGGCACGCGAGAAGACGACGTTGCGCGCGAGCCCCTTACGAAC
GACGCACGTTCCTCGTCCTCTCCCTCCCACAATCGGTTTGACGGTAGCAG
GAGCATCCGCAGCAATGCCACGACCAACGGCAAGAGCGGAGGTGCGGCAG
CGGGACCGAGGGGTTATGGACCCGGCGCCCCCCGCCCCGCCGCGCCCCCC
TCAACGCTGCTGGCTCCGATCCCCGGCACGTCGTCTAGCCCCTCGGTGGT
GCGTTTAGGGTCCCCCGAGGCGCGGGGTGACAGCTCTCCCCACCTGCTGG
GGGGGCAGAGCATGCCACTCCCTCAGGTAGTGCCTGGAGCGTCTGCGGTT
GGTGGTGGCGGAGGTAGCGGTGGAGGCGTTCCGGTAGCGGGAAACGGGCT
GATGCCTGTGCAATTGGGCGAGGAACTCGTGAGGCGGCAGCGGGTGCAGA
ACCAACTCGTGGTAGATTATGTGGGCGCTCAAGGCCTTGAGGTGCAGCAA
CATCTGCAACATCCGTTGAGGAAGAGTGACGCCGATGAGAGAGAGGGAGA
ATGGCGGCGTCGACAGGGAAAAGAGACGCAGGACGGATCGCAGCCTGAAG
ACGCCCGATCTCGCCAGCAACACCAGCACCAACATCGTCAACAGCAAGGC
ACGCGAGAAGACGACGTTGCGCGCGAGCCCCTTACGAACGACGCACGTTC
CTCGTCCTCTCCCTCCCACAATCGGTTTGACGGTAGCAGGAGCATCCGCA
GCAATGCCACGACCAACGGCAAGAGCGGAGGTGCGGCAGCGGGACCGAGG
GGTTATGGACCCGGCGCCCCCCGCCCCGCCGCGCCCCCCTCAACGCTGCT
GGCTCCGATCCCCGGCACGTCGTCTAGCCCCTCGGTGGTGCGTTTAGGGT
CCCCCGAGGCGCGGGGTGACAGCTCTCCCCACCTGCTGGGGGGGCAGAGC
ATGCCACTCCCTCAGGTAGTGCCTGGAGCGTCTGCGGTTGGTGGTGGCGG
AGGTAGCGGTGGAGGCGTTCCGGTAGCGGGAAACGGGCTGATGCCTGTGC
AATTGGGC
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