mRNA_F-serratus_M_contig6639.17643.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6639.17643.1
Unique NamemRNA_F-serratus_M_contig6639.17643.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.180e-49
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLRE 300
            M+G+AGSKRFM+PEVCK L YNE+ DVYSF IV+W+IC LRKPF+GMS+ DHYREV+ GG RP LD RWP AL HLL +CWH DPDRRPSI EAR+ L++
Sbjct:  234 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVLQQ 333
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.140e-45
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLRE 300
            M+G+AGSKRFMAPEVC  L YNE+ DVYSF +V+WQICALRKPF+GMS  DHY +VV GG RP LD+RWP  L HLL +CWH  PD RP++V+AR+TLR+
Sbjct:  193 MSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQARDTLRQ 292
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.670e-33
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETL 294
            M G  GS+RFMAPEV   + YNE+AD+YS+GIV+W++CAL+KPF+GMS  +H R+V   G RP LD RWP  L  LL SCWH + + RP   +A ETL
Sbjct:  263 MTGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERPDAAQAVETL 360
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A6V4M4K7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4M4K7_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 4.830e-29
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRP 267
            M G  GS R+MAPEV  +L YNE+ADV+SF ++++Q+ +  KPFSGM LE  Y +V+ GG RP +  +WP ++  LL  CWHPDPD RP
Sbjct:   55 MTGKTGSARYMAPEVALSLPYNEKADVHSFAMILYQLLSHEKPFSGMDLEMLYTDVIYGGQRPKVPRQWPASMRDLLRDCWHPDPDCRP 143
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.470e-28
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLR 297
            M G  GS R+MAPEV ++L YNE+ DVY+FG+++W++   R+ F GM + D Y  VV  G RP+LDS WP  L  L++ CWH D DRRP+     E LR
Sbjct:  179 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERLR 277
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: B8CCK4_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCK4_THAPS)

HSP 1 Score: 105 bits (263), Expect = 1.020e-27
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETL 294
            M+G  GS R+MAPEV     YN++ADVYSFGI++W++ A +KP+ GM+ ++ Y  VV GG RP L+ +WP  L+ L+ SCW  +  +RP+  +  E L
Sbjct:    1 MSGETGSLRYMAPEVADCQPYNQKADVYSFGIILWELVAFKKPYDGMNRDEFYSRVVRGGERPLLNKKWPEDLSELMKSCWDAELVKRPNFSDIVEIL 98
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.290e-27
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLRE 300
            M G  GS R+MAPEV ++L YNE+ DVY+FG+++W++   R+ F GMS+ D Y+ VV GG RP LDS WP AL  L++ CWH D D+RP        L++
Sbjct:  326 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRPDFHYIAAQLKD 425
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A6H5L2R6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.400e-27
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLR 297
            M G  GS R+MAPEV ++L YNE+ DVY+FG+++W++   R+ F GM + D Y  VV  G RP+LDS WP  L  L++ CWH D DRRP+     E LR
Sbjct:  392 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERLR 490
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A835Z9R1_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.120e-27
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   16 GSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLR 297
            G+ R+MAPEV +   YNER DVYSFG+++W++ A ++ F G+ L   Y+ V+  G RP +++ W  AL  L+ SCW P+PD RP I      LR
Sbjct:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALR 94
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BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-26
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLEDHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETL 294
            M+G  GS R+MAPEV K+L YN++ADVYSFGI++W++ A +KP+ GM+ ++ Y  VV G  RP ++ +WP  L  L+  CW  D   RPS  E  E L
Sbjct:  104 MSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERL 201
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6639.17643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE5.180e-4971.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE1.140e-4568.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE1.670e-3356.12Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6V4M4K7_9EUKA4.830e-2952.81Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
D7FS28_ECTSI9.470e-2849.49Protein kinase domain-containing protein n=1 Tax=E... [more]
B8CCK4_THAPS1.020e-2745.92Protein kinase domain-containing protein (Fragment... [more]
A0A835ZE86_9STRA1.290e-2749.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5L2R6_9PHAE3.400e-2749.49Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z9R1_9STRA7.120e-2744.68Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S1ZVA0_9STRA1.220e-2647.96Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6639contigF-serratus_M_contig6639:342..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D7FPX1
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.3358228-CDS-F-serratus_M_contig6639:341..6411622932041.3358228-CDS-F-serratus_M_contig6639:341..641Fucus serratus maleCDSF-serratus_M_contig6639 342..641 -
1690964116.5945945-CDS-F-serratus_M_contig6639:341..6411690964116.5945945-CDS-F-serratus_M_contig6639:341..641Fucus serratus maleCDSF-serratus_M_contig6639 342..641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6639.17643.1prot_F-serratus_M_contig6639.17643.1Fucus serratus malepolypeptideF-serratus_M_contig6639 342..641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6639.17643.1

>prot_F-serratus_M_contig6639.17643.1 ID=prot_F-serratus_M_contig6639.17643.1|Name=mRNA_F-serratus_M_contig6639.17643.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MAGVAGSKRFMAPEVCKNLQYNERADVYSFGIVMWQICALRKPFSGMSLE
DHYREVVVGGFRPHLDSRWPTALNHLLNSCWHPDPDRRPSIVEARETLRE
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mRNA from alignment at F-serratus_M_contig6639:342..641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6639.17643.1 ID=mRNA_F-serratus_M_contig6639.17643.1|Name=mRNA_F-serratus_M_contig6639.17643.1|organism=Fucus serratus male|type=mRNA|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig6639:342..641- (Fucus serratus male)
ATGGCTGGAGTGGCTGGCAGCAAGCGGTTCATGGCGCCGGAGGTGTGCAA
AAACTTGCAATACAATGAAAGAGCGGACGTGTACTCCTTCGGCATCGTGA
TGTGGCAGATCTGTGCTCTCCGAAAGCCGTTCTCCGGCATGAGCCTAGAG
GATCACTACCGAGAGGTCGTCGTGGGCGGATTCCGGCCTCACTTGGACTC
TAGGTGGCCGACGGCCCTCAACCACCTCTTAAACTCTTGTTGGCACCCCG
ATCCGGACCGGCGACCTTCCATCGTTGAAGCGCGAGAAACTCTACGGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6639:342..641-

>mRNA_F-serratus_M_contig6639.17643.1 ID=mRNA_F-serratus_M_contig6639.17643.1|Name=mRNA_F-serratus_M_contig6639.17643.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig6639:342..641- (Fucus serratus male)
ATGGCTGGAGTGGCTGGCAGCAAGCGGTTCATGGCGCCGGAGGTGTGCAA
AAACTTGCAATACAATGAAAGAGCGGACGTGTACTCCTTCGGCATCGTGA
TGTGGCAGATCTGTGCTCTCCGAAAGCCGTTCTCCGGCATGAGCCTAGAG
GATCACTACCGAGAGGTCGTCGTGGGCGGATTCCGGCCTCACTTGGACTC
TAGGTGGCCGACGGCCCTCAACCACCTCTTAAACTCTTGTTGGCACCCCG
ATCCGGACCGGCGACCTTCCATCGTTGAAGCGCGAGAAACTCTACGGGAA
ATGGCTGGAGTGGCTGGCAGCAAGCGGTTCATGGCGCCGGAGGTGTGCAA
AAACTTGCAATACAATGAAAGAGCGGACGTGTACTCCTTCGGCATCGTGA
TGTGGCAGATCTGTGCTCTCCGAAAGCCGTTCTCCGGCATGAGCCTAGAG
GATCACTACCGAGAGGTCGTCGTGGGCGGATTCCGGCCTCACTTGGACTC
TAGGTGGCCGACGGCCCTCAACCACCTCTTAAACTCTTGTTGGCACCCCG
ATCCGGACCGGCGACCTTCCATCGTTGAAGCGCGAGAAACTCTACGGGAA
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