mRNA_F-serratus_M_contig1233.1764.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1233.1764.1
Unique NamemRNA_F-serratus_M_contig1233.1764.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 7.150e-78
Identity = 142/307 (46.25%), Postives = 192/307 (62.54%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            A+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG++ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS+ L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                +  Q HLPIREGGLG+TSS  I+ +A+
Sbjct:  263 AYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 569          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.830e-76
Identity = 138/307 (44.95%), Postives = 189/307 (61.56%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            A+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG++ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS  L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+  L+ ++D Q S+Q+LR+S   RL HLLRT+ PSIT  AA  +D+L+ WA++ I+ G  A   G+PT  E                +  Q HLPIREGGLG+TSS  I+ +A+
Sbjct:  111 AYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 417          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 259 bits (663), Expect = 4.160e-75
Identity = 143/306 (46.73%), Postives = 198/306 (64.71%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGD---GAAAAGLPTPAES------------LRQAHLPIREGGLGLTSSSSIKGAAY 873
            AFNS+ R   LPALA+++P ++PYA+N+YAREPPKLL+  D G   V+ SA GVQQGCNLGPLCYSAG LK+L++FRANPPV G++ ++FIDD+ V+LP   + + AA   VT W+Q  +   G++LNR KS+ L   G   +   E+ R  ++ T L V   GMR+VGVPVG   + +    +   GEP +L++ +A ++DAQAS QILR SA +RL+ LLR++PP +T +AA+ +D  VE  L +I+ G    G  A   PT   S            +RQA LP+REGGLG+ S+  I G A+
Sbjct: 1299 AFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAF 1603          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.340e-74
Identity = 137/308 (44.48%), Postives = 193/308 (62.66%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            A+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 +  Q HLP+REGGLG+TS+  I+ +A+
Sbjct:  263 AYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 6.270e-74
Identity = 137/308 (44.48%), Postives = 194/308 (62.99%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            A+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 +  Q HLP+REGGLG+TS+  I+ +A+
Sbjct:  111 AYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 418          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.650e-73
Identity = 137/308 (44.48%), Postives = 193/308 (62.66%), Query Frame = 1
Query:    1 AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            A+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 +  Q HLP+REGGLG+TS+  I+ +A+
Sbjct:  263 AYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.780e-68
Identity = 122/268 (45.52%), Postives = 167/268 (62.31%), Query Frame = 1
Query:  118 LDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            ++ G  E+V S RGVQQGCNLG   +S G L  +KEF   PPVPG++ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS+ L  +G     LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                +  Q HLPIREGGLG+TSS  I+ +A+
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 268          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.690e-53
Identity = 99/236 (41.95%), Postives = 147/236 (62.29%), Query Frame = 1
Query:  217 LKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            +KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+P GTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 +  Q HLP+REGGLG+TS+  I+ +A+
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.950e-51
Identity = 102/235 (43.40%), Postives = 143/235 (60.85%), Query Frame = 1
Query:  217 LKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            +KEF   PPVPG++ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  + I L+  KS+ L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT  PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                +  Q HLPIREGGL +T S  I+ +A+
Sbjct:    1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAF 235          
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.810e-49
Identity = 99/236 (41.95%), Postives = 147/236 (62.29%), Query Frame = 1
Query:  217 LKEFRANPPVPGSRAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------SLRQAHLPIREGGLGLTSSSSIKGAAY 873
            +KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL  LLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 +  Q HLP+REGGLG+TS+  I+ +A+
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1233.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ4_9PHAE7.150e-7846.25Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE1.830e-7644.95Reverse transcriptase domain-containing protein (F... [more]
A0A6P0N5L4_9CYAN4.160e-7546.73Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5JCM0_9PHAE1.340e-7444.48Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE6.270e-7444.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LN63_9PHAE1.650e-7344.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K541_9PHAE6.780e-6845.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLD7_9PHAE1.690e-5341.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL76_9PHAE1.950e-5143.40Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ7_9PHAE4.810e-4941.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1233contigF-serratus_M_contig1233:184845..185768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score70.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog400682.PAC_15702732
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size873
Cds size873
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.1970694-CDS-F-serratus_M_contig1233:184844..1856361622929152.1970694-CDS-F-serratus_M_contig1233:184844..185636Fucus serratus maleCDSF-serratus_M_contig1233 184845..185636 +
1690962725.7029223-CDS-F-serratus_M_contig1233:184844..1856361690962725.7029223-CDS-F-serratus_M_contig1233:184844..185636Fucus serratus maleCDSF-serratus_M_contig1233 184845..185636 +
1622929152.2125344-CDS-F-serratus_M_contig1233:185687..1857681622929152.2125344-CDS-F-serratus_M_contig1233:185687..185768Fucus serratus maleCDSF-serratus_M_contig1233 185688..185768 +
1690962725.7152574-CDS-F-serratus_M_contig1233:185687..1857681690962725.7152574-CDS-F-serratus_M_contig1233:185687..185768Fucus serratus maleCDSF-serratus_M_contig1233 185688..185768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1233.1764.1prot_F-serratus_M_contig1233.1764.1Fucus serratus malepolypeptideF-serratus_M_contig1233 184845..185768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1233.1764.1

>prot_F-serratus_M_contig1233.1764.1 ID=prot_F-serratus_M_contig1233.1764.1|Name=mRNA_F-serratus_M_contig1233.1764.1|organism=Fucus serratus male|type=polypeptide|length=291bp
AFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVES
ARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGSRAVSFIDDITVILPP
EISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQR
VAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPM
EDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIA
GDGAAAAGLPTPAESLRQAHLPIREGGLGLTSSSSIKGAAY
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mRNA from alignment at F-serratus_M_contig1233:184845..185768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1233.1764.1 ID=mRNA_F-serratus_M_contig1233.1764.1|Name=mRNA_F-serratus_M_contig1233.1764.1|organism=Fucus serratus male|type=mRNA|length=924bp|location=Sequence derived from alignment at F-serratus_M_contig1233:184845..185768+ (Fucus serratus male)
GCCTTTAACAGCATATACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAAT CGTTCCCTCAGTGGTCCCCTACGCATCAAACCTGTACGCACGAGAACCCC CAAAACTTTTGTTTGCACTAGACGGTGGAGGTTCCGAAGTGGTTGAGTCA GCTCGGGGAGTACAGCAAGGATGTAATCTAGGTCCACTTTGCTACAGCGC AGGCTCACTGAAGATCCTAAAAGAATTCAGAGCCAATCCACCGGTGCCAG GATCGAGAGCGGTCTCGTTCATCGACGACATCACCGTTATTCTACCACCG GAAATTTCTCTCGATATTGCGGCTATAGGAAAAGTTACTGAATGGCTGCA GGAGCGCCTGGGGATAGAAGGTATCTCGCTGAACCGAAGGAAATCGCAGG CCCTGCTAGCAGATGGAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGA GTTGCAATGGATACTACAGGGCTTACGGTGGTCCGACAGGGGATGAGGGT TGTGGGAGTACCAGTCGGAACAGAACAGTTCCAGCGCGATTTCTTACAGG AGGCGGTTAATGGAGAGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATG GAGGATGCCCAAGCGAGCTTTCAGATTTTGCGTCTATCTGCCACCTCTCG CCTCTCGCACCTGCTCCGAACAGTCCCGCCCTCCATAACAGGCCAAGCTG CAGCAAGCTATGACGCTTTGGTGGAGTGGGCGTTGGCGTCTATCATAGCC GGCGACGGAGCTGCCGCGGCAGGGCTACCAACGCCAGCGGAAGTAGCCCA CGACCCCACGGTGTGCCAAAATCAGACCTACCTGGGACACGAGTCCCTAC GGCAGGCCCACCTGCCAATTCGAGAAGGCGGCCTTGGGCTCACCAGCAGT AGCTCCATCAAAGGCGCAGCATAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1233:184845..185768+

>mRNA_F-serratus_M_contig1233.1764.1 ID=mRNA_F-serratus_M_contig1233.1764.1|Name=mRNA_F-serratus_M_contig1233.1764.1|organism=Fucus serratus male|type=CDS|length=1746bp|location=Sequence derived from alignment at F-serratus_M_contig1233:184845..185768+ (Fucus serratus male)
GCCTTTAACAGCATATACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAAT
CGTTCCCTCAGTGGTCCCCTACGCATCAAACCTGTACGCACGAGAACCCC
CAAAACTTTTGTTTGCACTAGACGGTGGAGGTTCCGAAGTGGTTGAGTCA
GCTCGGGGAGTACAGCAAGGATGTAATCTAGGTCCACTTTGCTACAGCGC
AGGCTCACTGAAGATCCTAAAAGAATTCAGAGCCAATCCACCGGTGCCAG
GATCGAGAGCGGTCTCGTTCATCGACGACATCACCGTTATTCTACCACCG
GAAATTTCTCTCGATATTGCGGCTATAGGAAAAGTTACTGAATGGCTGCA
GGAGCGCCTGGGGATAGAAGGTATCTCGCTGAACCGAAGGAAATCGCAGG
CCCTGCTAGCAGATGGAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGA
GTTGCAATGGATACTACAGGGCTTACGGTGGTCCGACAGGGGATGAGGGT
TGTGGGAGTACCAGTCGGAACAGAACAGTTCCAGCGCGATTTCTTACAGG
AGGCGGTTAATGGAGAGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATG
GAGGATGCCCAAGCGAGCTTTCAGATTTTGCGTCTATCTGCCACCTCTCG
CCTCTCGCACCTGCTCCGAACAGTCCCGCCCTCCATAACAGGCCAAGCTG
CAGCAAGCTATGACGCTTTGGTGGAGTGGGCGTTGGCGTCTATCATAGCC
GGCGACGGAGCTGCCGCGGCAGGGCTACCAACGCCAGCGGAAGCCTTTAA
CAGCATATACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCT
CAGTGGTCCCCTACGCATCAAACCTGTACGCACGAGAACCCCCAAAACTT
TTGTTTGCACTAGACGGTGGAGGTTCCGAAGTGGTTGAGTCAGCTCGGGG
AGTACAGCAAGGATGTAATCTAGGTCCACTTTGCTACAGCGCAGGCTCAC
TGAAGATCCTAAAAGAATTCAGAGCCAATCCACCGGTGCCAGGATCGAGA
GCGGTCTCGTTCATCGACGACATCACCGTTATTCTACCACCGGAAATTTC
TCTCGATATTGCGGCTATAGGAAAAGTTACTGAATGGCTGCAGGAGCGCC
TGGGGATAGAAGGTATCTCGCTGAACCGAAGGAAATCGCAGGCCCTGCTA
GCAGATGGAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGAGTTGCAAT
GGATACTACAGGGCTTACGGTGGTCCGACAGGGGATGAGGGTTGTGGGAG
TACCAGTCGGAACAGAACAGTTCCAGCGCGATTTCTTACAGGAGGCGGTT
AATGGAGAGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATGGAGGATGC
CCAAGCGAGCTTTCAGATTTTGCGTCTATCTGCCACCTCTCGCCTCTCGC
ACCTGCTCCGAACAGTCCCGCCCTCCATAACAGGCCAAGCTGCAGCAAGC
TATGACGCTTTGGTGGAGTGGGCGTTGGCGTCTATCATAGCCGGCGACGG
AGCTGCCGCGGCAGGGCTACCAACGCCAGCGGAATCCCTACGGCAGGCCC
ACCTGCCAATTCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATC
AAAGGCGCAGCATATTCCCTACGGCAGGCCCACCTGCCAATTCGAGAAGG
CGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAGCATAT
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