mRNA_F-serratus_M_contig6630.17639.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6630.17639.1
Unique NamemRNA_F-serratus_M_contig6630.17639.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6630.17639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6630contigF-serratus_M_contig6630:17470..17785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932040.582962-CDS-F-serratus_M_contig6630:17469..177841622932040.582962-CDS-F-serratus_M_contig6630:17469..17784Fucus serratus maleCDSF-serratus_M_contig6630 17470..17784 +
1690964116.2981734-CDS-F-serratus_M_contig6630:17469..177841690964116.2981734-CDS-F-serratus_M_contig6630:17469..17784Fucus serratus maleCDSF-serratus_M_contig6630 17470..17784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6630.17639.1prot_F-serratus_M_contig6630.17639.1Fucus serratus malepolypeptideF-serratus_M_contig6630 17470..17784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6630.17639.1

>prot_F-serratus_M_contig6630.17639.1 ID=prot_F-serratus_M_contig6630.17639.1|Name=mRNA_F-serratus_M_contig6630.17639.1|organism=Fucus serratus male|type=polypeptide|length=105bp
EGGGSPKDSKLSTAPEPPGGGGEIGVGSNGAEGLSASNTFVSSSSSAAAV
AASALAEFSRDSGGLGGGAVRSRRGMTDVVPALYLDDEYDDDDVVHHVFS
ERASV
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mRNA from alignment at F-serratus_M_contig6630:17470..17785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6630.17639.1 ID=mRNA_F-serratus_M_contig6630.17639.1|Name=mRNA_F-serratus_M_contig6630.17639.1|organism=Fucus serratus male|type=mRNA|length=316bp|location=Sequence derived from alignment at F-serratus_M_contig6630:17470..17785+ (Fucus serratus male)
GAGGGTGGGGGCTCTCCCAAGGATTCGAAACTGTCGACTGCTCCTGAACC
TCCGGGAGGTGGCGGCGAGATAGGTGTTGGTTCGAATGGTGCGGAGGGAT
TGTCGGCATCTAACACTTTCGTTTCGTCCTCCTCCTCCGCCGCCGCCGTC
GCCGCCAGTGCGCTGGCTGAGTTTTCGCGAGATTCCGGAGGCCTCGGCGG
CGGTGCCGTGCGTTCGAGGAGGGGGATGACAGACGTCGTCCCTGCTCTGT
ACCTCGACGATGAATACGACGATGATGATGTCGTGCATCACGTGTTCAGC
GAGAGGGCTAGTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6630:17470..17785+

>mRNA_F-serratus_M_contig6630.17639.1 ID=mRNA_F-serratus_M_contig6630.17639.1|Name=mRNA_F-serratus_M_contig6630.17639.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig6630:17470..17785+ (Fucus serratus male)
GAGGGTGGGGGCTCTCCCAAGGATTCGAAACTGTCGACTGCTCCTGAACC
TCCGGGAGGTGGCGGCGAGATAGGTGTTGGTTCGAATGGTGCGGAGGGAT
TGTCGGCATCTAACACTTTCGTTTCGTCCTCCTCCTCCGCCGCCGCCGTC
GCCGCCAGTGCGCTGGCTGAGTTTTCGCGAGATTCCGGAGGCCTCGGCGG
CGGTGCCGTGCGTTCGAGGAGGGGGATGACAGACGTCGTCCCTGCTCTGT
ACCTCGACGATGAATACGACGATGATGATGTCGTGCATCACGTGTTCAGC
GAGAGGGCTAGTGTAGAGGGTGGGGGCTCTCCCAAGGATTCGAAACTGTC
GACTGCTCCTGAACCTCCGGGAGGTGGCGGCGAGATAGGTGTTGGTTCGA
ATGGTGCGGAGGGATTGTCGGCATCTAACACTTTCGTTTCGTCCTCCTCC
TCCGCCGCCGCCGTCGCCGCCAGTGCGCTGGCTGAGTTTTCGCGAGATTC
CGGAGGCCTCGGCGGCGGTGCCGTGCGTTCGAGGAGGGGGATGACAGACG
TCGTCCCTGCTCTGTACCTCGACGATGAATACGACGATGATGATGTCGTG
CATCACGTGTTCAGCGAGAGGGCTAGTGTA
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