prot_F-serratus_M_contig663.17627.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig663.17627.1
Unique Nameprot_F-serratus_M_contig663.17627.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length91
Homology
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.440e-32
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            +RKP VV  I ER+ L+K+QAEAAL AFT+ V+  V+DG KI+LQGFGTFE R R GR GRNPRTGE ++IKATT PAFSASK FK+ V
Sbjct:   67 LRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 155          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.110e-28
Identity = 51/89 (57.30%), Postives = 71/89 (79.78%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            ++K   VA I  ++GL+K+Q +AA+ AF +TV++ V+DGKK++L GFGTFESRERA RQGRNP+TGE + I A+  PAFSA+K FK++V
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A6L5GQ70_9FIRM (HU family DNA-binding protein n=3 Tax=Eubacteriaceae TaxID=186806 RepID=A0A6L5GQ70_9FIRM)

HSP 1 Score: 101 bits (251), Expect = 3.720e-26
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKE 88
            + K Q+VA I E++GL+K ++E AL AFTE++V+ +  G K++L GFGTF+ R RA RQG NPRT EPIEIKA+  PAF A K FK+
Sbjct:    1 MNKTQLVASISEKSGLSKKESEKALSAFTESIVEALQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASNAPAFKAGKAFKD 87          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: K9U4A1_CHRTP (Bacterial nucleoid protein Hbs n=3 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U4A1_CHRTP)

HSP 1 Score: 101 bits (251), Expect = 4.170e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K ++V  I E+A + K QA+A L A  ET++D VS G K+ L GFG+FESRER  R+GRNP+TG+ +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDSIAEKASVTKKQADAVLTAALETIIDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATKVPAFSAGKLFKEKV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: F4Y0D3_9CYAN (Bacterial nucleoid protein Hbs n=29 Tax=Moorena TaxID=1155738 RepID=F4Y0D3_9CYAN)

HSP 1 Score: 100 bits (250), Expect = 5.920e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K ++V ++ E+A + K QA+A L A  ET+++ VS+G K+ L GFG+FESRER  R+GRNP+TGE +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREGRNPKTGEKMEIPATKVPAFSAGKVFKERV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A7C3PJK0_9CYAN (HU family DNA-binding protein n=2 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PJK0_9CYAN)

HSP 1 Score: 100 bits (249), Expect = 7.720e-26
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K ++V  I  +AG+ K  A+A L A TET+++ V+DG+K+ L GFGTFE R+R  R+GRNP TG+PI I ATTVP FSA K FKE+V
Sbjct:    1 MNKQELVDAIAVKAGVTKKDADAILSALTETIMEAVADGEKVTLVGFGTFEPRDRQAREGRNPSTGKPITIPATTVPGFSAGKLFKEKV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A8J7B6Z1_9CYAN (HU family DNA-binding protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7B6Z1_9CYAN)

HSP 1 Score: 100 bits (249), Expect = 8.400e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K  +V ++ ++A + K QA+A L A  ETV++ VS G+K+ L GFG+FESR+R  R+GRNP+TGE +EIKAT VPAFSA K FKE+V
Sbjct:    1 MNKGDLVDKVAQKAAVTKKQADAVLTATLETVMEAVSKGEKVTLVGFGSFESRDRKAREGRNPKTGEKMEIKATCVPAFSAGKLFKEKV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: A0A098TFT8_9CYAN (DNA-binding protein n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A098TFT8_9CYAN)

HSP 1 Score: 100 bits (248), Expect = 1.160e-25
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K ++V ++ E+A + K QA+A L A  E +VD VS G K+ L GFG+FESRER  R+GRNP+TGE +EI AT VPAFSA K FKE+V
Sbjct:    1 MNKGELVDKVAEKAHVTKKQADAVLTAALEAIVDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGEKMEIPATKVPAFSAGKLFKEKV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: U5DQY8_9CHRO (Bacterial nucleoid DNA-binding protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DQY8_9CHRO)

HSP 1 Score: 99.4 bits (246), Expect = 2.210e-25
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K  ++ +I E+  + K QA+A L A  +T+++ VSDG+K+ L GFG+FESRER  R+GRNP+TG+ +EI AT VPAFSA K+FKE+V
Sbjct:    1 MNKGDLIDQIAEKTTVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKSFKEKV 89          
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Match: UPI001684A996 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001684A996)

HSP 1 Score: 99.4 bits (246), Expect = 2.210e-25
Identity = 46/89 (51.69%), Postives = 69/89 (77.53%), Query Frame = 0
Query:    2 VRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGTFESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV 90
            + K +++ ++ E+A + K +A+A + AFTE+VV+ V++G+K+ L GFGTFE R RA R+GRNP+TGE ++I A+TVP FSA K FKE+V
Sbjct:    1 MNKAELIDKVAEKANVTKKEADALISAFTESVVEAVAEGQKVTLVGFGTFEPRARAEREGRNPKTGEAMKIPASTVPVFSAGKLFKEKV 89          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig663.17627.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST5_ECTSI1.440e-3267.42DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z9S8_9STRA2.110e-2857.30DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
A0A6L5GQ70_9FIRM3.720e-2656.32HU family DNA-binding protein n=3 Tax=Eubacteriace... [more]
K9U4A1_CHRTP4.170e-2656.18Bacterial nucleoid protein Hbs n=3 Tax=Chroococcid... [more]
F4Y0D3_9CYAN5.920e-2655.06Bacterial nucleoid protein Hbs n=29 Tax=Moorena Ta... [more]
A0A7C3PJK0_9CYAN7.720e-2655.06HU family DNA-binding protein n=2 Tax=Oscillatoria... [more]
A0A8J7B6Z1_9CYAN8.400e-2655.06HU family DNA-binding protein n=1 Tax=Lusitaniella... [more]
A0A098TFT8_9CYAN1.160e-2556.18DNA-binding protein n=2 Tax=Leptolyngbyaceae TaxID... [more]
U5DQY8_9CHRO2.210e-2552.81Bacterial nucleoid DNA-binding protein n=1 Tax=Rub... [more]
UPI001684A9962.210e-2551.69HU family DNA-binding protein n=1 Tax=Pseudanabaen... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000119Histone-like DNA-binding proteinPRINTSPR01727DNABINDINGHUcoord: 75..89
score: 35.9
coord: 59..72
score: 62.39
coord: 41..56
score: 46.56
IPR000119Histone-like DNA-binding proteinSMARTSM00411bhlneucoord: 2..90
e-value: 2.9E-27
score: 106.6
IPR000119Histone-like DNA-binding proteinPFAMPF00216Bac_DNA_bindingcoord: 3..90
e-value: 5.8E-28
score: 96.9
IPR000119Histone-like DNA-binding proteinPANTHERPTHR33175FAMILY NOT NAMEDcoord: 3..90
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilyGENE3D4.10.520.10coord: 2..90
e-value: 5.7E-30
score: 105.5
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilySUPERFAMILY47729IHF-like DNA-binding proteinscoord: 3..90
IPR020816Histone-like DNA-binding protein, conserved sitePROSITEPS00045HISTONE_LIKEcoord: 47..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig663contigF-serratus_M_contig663:58339..58935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig663.17627.1mRNA_F-serratus_M_contig663.17627.1Fucus serratus malemRNAF-serratus_M_contig663 58339..58935 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig663.17627.1 ID=prot_F-serratus_M_contig663.17627.1|Name=mRNA_F-serratus_M_contig663.17627.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MVRKPQVVAEIMERAGLNKSQAEAALVAFTETVVDWVSDGKKINLQGFGT
FESRERAGRQGRNPRTGEPIEIKATTVPAFSASKTFKEQV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000119Hist_DNA-bd
IPR010992IHF-like_DNA-bd_dom_sf
IPR020816Histone-like_DNA-bd_CS