mRNA_F-serratus_M_contig662.17612.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A6H5K1A9_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1A9_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.580e-37 Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 1
Query: 547 RSGEVPTSTLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQ 864
R+G + LLDEDI+ERF GSGPGGQKINKVRNCVQLTH P+G+ VSCQ+SREL NRHIAR+RL EKVEF L G +SKVGRRI ++ KKAR+QRKSRLKHQ
Sbjct: 45 RAGGTRPAFELLDEDIEERF--GSGPGGQKINKVRNCVQLTHLPSGVSVSCQDSRELHANRHIARKRLKEKVEFQLMGADSKVGRRINNIRNKKARSQRKSRLKHQ 148
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A836CHX6_9STRA (RF-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX6_9STRA) HSP 1 Score: 118 bits (295), Expect = 7.890e-28 Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1
Query: 559 VPTSTLLLDE-DIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKL 816
PT L L+E DI E FVKGSGPGGQKINKVR+CVQLTH PTGI V CQ++R+L NR IAR+ LAEKVEFHL+G +S++GRR++++
Sbjct: 32 APTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRV 118
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A0G4IRH9_PLABS (RF_PROK_I domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IRH9_PLABS) HSP 1 Score: 112 bits (279), Expect = 1.010e-25 Identity = 55/122 (45.08%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 541 GSRSGEVPTSTLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQGPRQVTEAHEGSAP 906
G+R + +STL ++D+DE+F+ G G GGQKINK +CVQL H+PTG+++ CQE+R L +NR IAR+RLA +++ L GD S++ RR +L+ +K++ + +SR K+ R+ E +G+AP
Sbjct: 16 GARPRSLFSSTLFDEDDLDEKFIHGGGNGGQKINKTASCVQLVHKPTGLLIKCQETRSLQQNRSIARKRLAAQLDLQLNGDSSRIARRQERLRRRKSKHRSRSRAKYG--REDDEPGDGAAP 135
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: M2W9M1_GALSU (Bacterial peptide chain release factor-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W9M1_GALSU) HSP 1 Score: 109 bits (273), Expect = 4.080e-24 Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 568 STLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKH 861
S L ++D+DE+F++G GPGGQ INK +CV L H+PTGI V CQESR +NR IAR+RL EK++ + +G+ESKV ++IAK++ +KA ++K+ KH
Sbjct: 96 SIELREQDLDEKFIRGGGPGGQSINKTESCVVLVHKPTGIWVKCQESRSQFRNRQIARQRLKEKIDLYYRGEESKVAQKIAKIRARKANRRKKAIKKH 193
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: UPI0009E32CB5 (probable peptide chain release factor C12orf65 homolog, mitochondrial n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E32CB5) HSP 1 Score: 106 bits (265), Expect = 1.740e-23 Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 577 LLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQGPRQVTEAHEGSAPSPEDGFEDD 933
L ++D++E F++G GPGGQK+NK NCVQL H+PTGI++ C ESR L +NR IAR L +K++F G ES G+ IAK+K++KA RK R + Q V E + P D EDD
Sbjct: 55 LNEDDMEENFIRGWGPGGQKVNKSSNCVQLIHKPTGIVIKCHESRSLARNRVIARELLKQKLDFLYNGKESAAGQAIAKIKKRKASYARKRRKREQA---VAEGLQNMDDGPSDSVEDD 170
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A3P3YDX6_PLABS (Pyrroline-5-carboxylate reductase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YDX6_PLABS) HSP 1 Score: 112 bits (279), Expect = 2.160e-23 Identity = 55/122 (45.08%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 541 GSRSGEVPTSTLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQGPRQVTEAHEGSAP 906
G+R + +STL ++D+DE+F+ G G GGQKINK +CVQL H+PTG+++ CQE+R L +NR IAR+RLA +++ L GD S++ RR +L+ +K++ + +SR K+ R+ E +G+AP
Sbjct: 16 GARPRSLFSSTLFDEDDLDEKFIHGGGNGGQKINKTASCVQLVHKPTGLLIKCQETRSLQQNRSIARKRLAAQLDLQLNGDSSRIARRQERLRRRKSKHRSRSRAKYG--REDDEPGDGAAP 135
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A3M6VCW6_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW6_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.210e-22 Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 409 MFLSILRRRFPPPFATTTSAP--FFKSTRGIDVTRHMHGSFANSFPGSRSGEVPTSTLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKH 861
M L+ L R+ F ++ P FF T V+ +H +S S E PT L + D+DE FVKGSG GGQKINKVRNCV LTH PTG+ V Q++R L NR IAR+ L +K++ ++ G SK +I L+ KKA + KS+ K+
Sbjct: 1 MALTRLSSRYVSAFCSSIPNPIIFFSQT----VSFPLHSRVLSS-----SAEQPTDIQLKESDLDESFVKGSGKGGQKINKVRNCVLLTHLPTGLQVRTQKTRSLDGNRRIARKLLIQKLDDYMNGSLSKNSVKIEHLRRKKANRRAKSKQKY 144
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A7S2S280_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S280_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.530e-22 Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1
Query: 568 STLLLDE-DIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAK 813
S L L E D++E FVKG+GPGGQKINKVRNCVQL H PTG+ V+ Q+ R L NR IAR+RLAEKV+ + G ESK+G+++AK
Sbjct: 72 SRLTLSENDLEEAFVKGTGPGGQKINKVRNCVQLRHTPTGLTVAVQDGRSLTANRAIARKRLAEKVDLEMNGRESKLGKKVAK 154
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A2T2NRU2_CORCC (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2NRU2_CORCC) HSP 1 Score: 102 bits (254), Expect = 1.560e-22 Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 559 VPTSTLLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQGPRQVTEAHEG 897
+P ++LDE+I+E F+KGSGPGGQKINK + VQL H PTGI+V CQE+R +NR +ARR L+E++E GD+S+ + +KKA A +K R K++ + E EG
Sbjct: 14 LPPRRVILDEEIEENFLKGSGPGGQKINKTSSAVQLKHLPTGIVVKCQETRSRTQNRKLARRLLSERIEEFELGDQSRTAIKARAKSKKKASADKKKRRKYRALEEGKEVEEG 126
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Match: A0A068RXF8_9FUNG (RF_PROK_I domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RXF8_9FUNG) HSP 1 Score: 102 bits (254), Expect = 2.720e-22 Identity = 50/102 (49.02%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 574 LLLDEDIDERFVKGSGPGGQKINKVRNCVQLTHRPTGIMVSCQESRELPKNRHIARRRLAEKVEFHLKGDESKVGRRIAKLKEKKARAQRKSRLKHQGPRQV 879
+L D D+ E+F+KGSGPGGQ INK +CV+L H PTGI+V CQ++R L +NR IAR+ L EK++ ++ GD SK +R AK+++ KAR R+++ K+ P+++
Sbjct: 34 VLEDSDLVEKFIKGSGPGGQAINKRVSCVELKHIPTGILVQCQQTRSLEQNRGIARKLLKEKLDTYINGDLSKSAKRAAKIQKSKARKARRAKKKYGDPKEL 135 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig662.17612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig662.17612.1 >prot_F-serratus_M_contig662.17612.1 ID=prot_F-serratus_M_contig662.17612.1|Name=mRNA_F-serratus_M_contig662.17612.1|organism=Fucus serratus male|type=polypeptide|length=196bp MFLSILRRRFPPPFATTTSAPFFKSTRGIDVTRHMHGSFANSFPGSRSGEback to top mRNA from alignment at F-serratus_M_contig662:159729..163018+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig662.17612.1 ID=mRNA_F-serratus_M_contig662.17612.1|Name=mRNA_F-serratus_M_contig662.17612.1|organism=Fucus serratus male|type=mRNA|length=3290bp|location=Sequence derived from alignment at F-serratus_M_contig662:159729..163018+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig662:159729..163018+ >mRNA_F-serratus_M_contig662.17612.1 ID=mRNA_F-serratus_M_contig662.17612.1|Name=mRNA_F-serratus_M_contig662.17612.1|organism=Fucus serratus male|type=CDS|length=1176bp|location=Sequence derived from alignment at F-serratus_M_contig662:159729..163018+ (Fucus serratus male)back to top |