mRNA_F-serratus_M_contig661.17601.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig661.17601.1
Unique NamemRNA_F-serratus_M_contig661.17601.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig661.17601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig661contigF-serratus_M_contig661:179844..184450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size517
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig661.17601.1prot_F-serratus_M_contig661.17601.1Fucus serratus malepolypeptideF-serratus_M_contig661 179885..184450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.850942-UTR-F-serratus_M_contig661:179843..1798841622932028.850942-UTR-F-serratus_M_contig661:179843..179884Fucus serratus maleUTRF-serratus_M_contig661 179844..179884 +
1690964110.2120845-UTR-F-serratus_M_contig661:179843..1798841690964110.2120845-UTR-F-serratus_M_contig661:179843..179884Fucus serratus maleUTRF-serratus_M_contig661 179844..179884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.8664095-CDS-F-serratus_M_contig661:179884..1799441622932028.8664095-CDS-F-serratus_M_contig661:179884..179944Fucus serratus maleCDSF-serratus_M_contig661 179885..179944 +
1690964110.2228825-CDS-F-serratus_M_contig661:179884..1799441690964110.2228825-CDS-F-serratus_M_contig661:179884..179944Fucus serratus maleCDSF-serratus_M_contig661 179885..179944 +
1622932028.8825703-CDS-F-serratus_M_contig661:180366..1805381622932028.8825703-CDS-F-serratus_M_contig661:180366..180538Fucus serratus maleCDSF-serratus_M_contig661 180367..180538 +
1690964110.235282-CDS-F-serratus_M_contig661:180366..1805381690964110.235282-CDS-F-serratus_M_contig661:180366..180538Fucus serratus maleCDSF-serratus_M_contig661 180367..180538 +
1622932028.9006712-CDS-F-serratus_M_contig661:184208..1844501622932028.9006712-CDS-F-serratus_M_contig661:184208..184450Fucus serratus maleCDSF-serratus_M_contig661 184209..184450 +
1690964110.2475717-CDS-F-serratus_M_contig661:184208..1844501690964110.2475717-CDS-F-serratus_M_contig661:184208..184450Fucus serratus maleCDSF-serratus_M_contig661 184209..184450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig661.17601.1

>prot_F-serratus_M_contig661.17601.1 ID=prot_F-serratus_M_contig661.17601.1|Name=mRNA_F-serratus_M_contig661.17601.1|organism=Fucus serratus male|type=polypeptide|length=158bp
MSRRFNISRPTRIERVATSQSSILQFFGGGNAAAPPPVPEPSKTSTQLRD
NDVRKSTSGPQEKRMKEDENLTAVDISGIGHLSARVRPKLNCTTLPDDSF
PSPKTGRTDTSSPLPSTAMDETISSSPPEDFVAPKIAKCARKKGGAEACA
AATLRPTK
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mRNA from alignment at F-serratus_M_contig661:179844..184450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig661.17601.1 ID=mRNA_F-serratus_M_contig661.17601.1|Name=mRNA_F-serratus_M_contig661.17601.1|organism=Fucus serratus male|type=mRNA|length=4607bp|location=Sequence derived from alignment at F-serratus_M_contig661:179844..184450+ (Fucus serratus male)
TTGGTGTCGAGACAAATAGAAGGCACCAAGGAAGTCAATAAATGTCGAGG
AGATTCAATATTTCCCGTCCTACCCGTATTGAACGAGTAGCTACATCCCA
GGTACGCTTGAGATACCGTAGCTGTGCCGAGGGAATGAAGTCTTTTGAGA
TTTGTGGGGATTCAAATTACGTAGTATACTTGAGTGTACAGGATTAGACT
ATACTAACATTGGGATACCAGTTTGAAAAGTTTTTGTCCGTACAGCCAAT
GTTCCCACCTAAACGTTCTGACAACTTTTCCACATGTGCTTGACTAAGTG
GGTGGATGCTGAGAAGGTTTAGATACGTTCAGATttctcgTTGAACTAGA
GGAGCACAGAATATTAGCTTGAACATTAGAGGAGCACAGAATATAAGCTG
TTAGAAGACATGAGGGTTTTTTTATCTGGTTGTTCTCACACGGCCGGTGG
GGTGGTTGGTGTTTTCTAAACAAACCTACTCGTCGTGCTTTTATCTATCG
TGATCGATTTTCGCCATGACCAGAGTTCAATCTTGCAATTCTTTGGGGGA
GGGAACGCCGCTGCTCCGCCGCCGGTCCCAGAACCCTCCAAAACGAGCAC
GCAGCTGCGGGATAACGATGTTCGGAAATCAACATCGGGTCCCCAGGAGA
AACGAATGAAAGAAGACGAGAACCTGACTGCCGTTGATATCTCAGGTGAA
ACTCTCATCAGTCATGAAAGCAATATAATATTCAATATTTGTACGGAAAA
GAAAAGACACTTAGAACTACCCAATCAGGAGTCAGGAAATTAAGAACTAA
AGATCCTTTCACACAGGTACAATCCCCACCACTGCACATGTAGACCATGT
TTATTTATTAAATTGCACATAACCGGATTGTATGTGTGTATGTATGGTCA
TCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTC
GTGGTCAGCTGAACAGGGAAAATGAATATCCCCCTGTCCCCGTGCGTGCC
TGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTTCCGTCCCGTCAGCCT
GCTCATCTCCATGCTCAGGCTGGATCTGGTGCTTACTTACGGGATTCCTC
ACGGGTTCCCCGGCGGCGTCCATTTATGAAACCGCCATACCCCATCGGGT
CAGGCCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACT
ACCGAGAGTCCGCCGGCACAGAACCAGTAAACCTCAAGGTAGCTACGAAC
GAGTGCTACCTTGGCAGGTCACCATGGACCAATTAATATTCGCCTCTCTT
TCCCACACCCACTATTGGTATGGAGTGGGCATGTTGAAAGACTGTACTGA
AGTATAATTTCATGACCTGAAGTCTTCTTTGGTGTTTGGTTTTTGTGTTT
GGTGTCCCAACATGGTGATTGATGTCAGTGTACAGTACAGTAGTATAACA
GTGGGTTCCTCCCGAAATTATACGGTTGACCCTATGTGATAACATTGGGA
ACCCTTAATACCATGTAGAGTTTTTATCCTTACAGTCAATGTTCCCACCT
ATTAATAGACTAAACGTTTTGATTGGTCAGGAGGTTTAGCTGCGCTCAGA
TTTTTTCTTAACACGCTGAAGTGCGAATCAACGAGAGGTGTGTATTGGGA
AATTTTCCGTAATCTTTTCTACATCCATAACTCGTAGATCTCCTTCATCG
ACACCCATCCTATTCTAGACTCAACGTAACAAACTGTAATGTAGGCTCAT
CTCGTCTTTTGTCTTTTTAAAGAAAAATCTGAACGCATCTAGATCTTCTG
AGCATACTATACCCCAGTCAGGGGGGGGGGAAATGTCAAAACGTTAACGT
TTAGGTGCAATCATAATCAGCAAAGACAAAACCTCTTCGTGGCATTTAAT
CGGGTTCCCCAATGGTAGTAACATAGGGTCTACAGTACAATTGTCCGGGA
GAAACCCATCGTTATACAGCCGGTCGCCCTGGTAGCTCAGAGGTAACCTC
GTGACCTTCTGCCACGTTGGGACGTGAGTTCGAATTTCGGTAAACGGAAT
TTTATTTTCACTAAAAAAAAATGCCCAACGAGTAGAAAACGATTAAATCG
TTACGGTACTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAACG
GCTGCATCCTTCTCGCGAGATGTCCAGAATAAATGGGAAGAAAAAACACG
CACACACACAAACTTTACACTCACATTATTCGCCATGCAGGGAGACCAAC
AAAGCATAATACCCTGGTAGACAAAACAAAGACACGATGAGCTTGGATTC
CAGCTCAAATTGCTTCTTTGGGTATAGGATCGGATGGTATCGATGAAGGA
AATATTCATTGTTTTCTTTGGTGTCGCTGCATGTTATGTGGCGATTAACG
TAAGTGTACCAGGTACAGTATAACGGTGGGCTTCTACTCCCCAACATGAT
ACTGTTGACCCAGTGTTACTGCCATTGGGGAATATAACCCGATTAAATGC
CATGAAAAGAGGTTTTGTCTTTGCAGCCTATGATCCCACCTGAACGTTTT
GATATTTTTTCTCCCTGACTGGTGACTGGGGGATGCTCAGAAGGTCGAGA
TGCGCTCAGATTTTTCTTTAAACTCTGTATCATAATCATCCAAGGACTGT
CGTGACGTGGATATGATGGTTTTGTTTTTTGTTGTTTTTCGGTTGGTCAT
ATCGCTGGTACTTTCAACATGCCCACTTCATACCAATAGCGGATGTGGGA
AAGAGAGGCGCATATTAATTGGTCCATGGTGACCTGCCAAGGCAGCGCCC
GTTTGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGACGGACTCTCGGC
AGTGAACGCCATCGGTACGCAACTGTGTGACCCGATAACTCGGGACTGAC
CCGATGGCGTATGGTGGTTTGAATAAATAAATGGACGCCGCCGCGGAACT
CGGGAGGAATCCTGTAAGTAAGCACCAGGTTCAGCCTGAGTACAGAGATG
AGCAGGCTGATACGGGACGGGACGGCCAAACCCGTCCCGCGGAACCAAAT
TCTCAGGCGCGAACGGGGACAAGGAAATATTCATTTTTCGCTGTTCAGCT
GACCACGAGCAGGATTGGCAATTAAACCCGGTTGATCCTTACTCTTGCTA
TATGTATAACAAAGATTGTGTCGCGATTTCCGATGCTTTCTCGTTTGAGT
AGTGGGGTGCCACCATGACGTCACGTCGCCCAATACATTTGCTGAAAGCA
CGAATGATCCAATCAATACGGTTTCCACCCGGTACGATCTTGTACATACA
AGAAGAGTACAGTACACGAATACTCAAAGACAGCTAATGTAGCGCATCGC
GTCATAGTTTTCGACTTCGCGAGATTAACATGAGTCAATTTGAACATCAA
GCGTCAATCGAGTTTAACGGAACAGCTGGTGTGTTGAACAAACGTCTGGA
CTAATTTTATTTGCTTCCGGCTTCACCGCTTCCTGAGGATTCTTAACAGA
CAGAAGTACTGGTTTGCCGCCCAACAGCTCCACAAGTACCCTTACTACTG
TACCTGTTCAAATCGTCGCATTTTATTTTGATGTACTGCGGTAGTATTAA
AACTACTGTATAGGAATACCGCAACAGTGTACTTGTACGTATATTGCCTG
TATATGTATGGTCACACATATGCCATACACTTACTACTCTTTAGCAATGT
ATGGTACGAGTGTGTGTGTGTGTTGTCATCCCATTTATTCTGGACGTCAG
ACTTGTGGACGCACCAGCCGGGGTCACGCAGGAAGAAGGTCCCACAGGAT
TTCTCCACCTTGCTTCTGGGGCGGTTGCCTTATTTTTTCTCGCGAGAAGG
ATGCGGTGGACGTCAGAAGGTTTCGAGGTTACCAACTCATCCACAGTTGA
AAAAATACCGAATACTGTAGAGTAGTATTAAGTTATGGTGGAAGTACTTC
GTACGGGTAATAGTGCGTATCAGGAACAGTTACAACTTATAAAATGCACA
CCTGACGACGTTAAAAAAAATGCGCTGAACGCACAAGCCAAGCAATTATG
AAGTCTCATGAATGAAGTTCACAAAAATAAAAAATAAAGATCAATATTAC
GTAACGGCCAAGCCCTATGGCATCTATATCTGCATTTGAGCGTAGCTTTG
GCTTGCCCTATTTTTTATTTTTCAACACAAACAAGAAACACAAAAAAAAC
TCGCGGAATATTGGACTCGCTTGGACGCGCTACATCGTATGGTTTGGTAC
TGCAGTACGTTTATGGCGGCCTGCCCCCCAGCTCTTTGGTACCACTTATA
TACAGCACTAATCACTCCTGGATCGTCCGCGCGACCGATGACTCTGCCCA
ATTCATCCATCTCAGGGATCGGTCATCTCTCAGCGCGGGTTCGTCCGAAA
CTGAACTGCACGACACTACCAGATGATTCGTTTCCGAGTCCTAAGACTGG
ACGAACAGACACATCCTCGCCGCTACCCTCGACGGCAATGGACGAGACAA
TATCATCGTCACCACCCGAGGACTTCGTCGCTCCGAAAATCGCCAAGTGC
GCGCGGAAGAAAGGTGGGGCGGAGGCCTGCGCTGCCGCTACCCTACGTCC
AACCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig661:179844..184450+

>mRNA_F-serratus_M_contig661.17601.1 ID=mRNA_F-serratus_M_contig661.17601.1|Name=mRNA_F-serratus_M_contig661.17601.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig661:179844..184450+ (Fucus serratus male)
ATGTCGAGGAGATTCAATATTTCCCGTCCTACCCGTATTGAACGAGTAGC
TACATCCCAGATGTCGAGGAGATTCAATATTTCCCGTCCTACCCGTATTG
AACGAGTAGCTACATCCCAGAGTTCAATCTTGCAATTCTTTGGGGGAGGG
AACGCCGCTGCTCCGCCGCCGGTCCCAGAACCCTCCAAAACGAGCACGCA
GCTGCGGGATAACGATGTTCGGAAATCAACATCGGGTCCCCAGGAGAAAC
GAATGAAAGAAGACGAGAACCTGACTGCCGTTGATATCTCAGAGTTCAAT
CTTGCAATTCTTTGGGGGAGGGAACGCCGCTGCTCCGCCGCCGGTCCCAG
AACCCTCCAAAACGAGCACGCAGCTGCGGGATAACGATGTTCGGAAATCA
ACATCGGGTCCCCAGGAGAAACGAATGAAAGAAGACGAGAACCTGACTGC
CGTTGATATCTCAGGGATCGGTCATCTCTCAGCGCGGGTTCGTCCGAAAC
TGAACTGCACGACACTACCAGATGATTCGTTTCCGAGTCCTAAGACTGGA
CGAACAGACACATCCTCGCCGCTACCCTCGACGGCAATGGACGAGACAAT
ATCATCGTCACCACCCGAGGACTTCGTCGCTCCGAAAATCGCCAAGTGCG
CGCGGAAGAAAGGTGGGGCGGAGGCCTGCGCTGCCGCTACCCTACGTCCA
ACCAAGGGATCGGTCATCTCTCAGCGCGGGTTCGTCCGAAACTGAACTGC
ACGACACTACCAGATGATTCGTTTCCGAGTCCTAAGACTGGACGAACAGA
CACATCCTCGCCGCTACCCTCGACGGCAATGGACGAGACAATATCATCGT
CACCACCCGAGGACTTCGTCGCTCCGAAAATCGCCAAGTGCGCGCGGAAG
AAAGGTGGGGCGGAGGCCTGCGCTGCCGCTACCCTACGTCCAACCAAG
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