mRNA_F-serratus_M_contig6601.17591.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6601.17591.1
Unique NamemRNA_F-serratus_M_contig6601.17591.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: D8LL65_ECTSI (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL65_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 7.840e-31
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRA 255
            W  SGVN+SF LC TYGR+LVVPSAL E  I KASKWRSR RIP L+WLHP+TGAGLCRSS+P+TG  +NPS  +D+ +L  IRA
Sbjct:  123 WAYSGVNKSFRLCPTYGRYLVVPSALDEAGIRKASKWRSRCRIPVLSWLHPLTGAGLCRSSQPMTGLGINPSSPEDEQLLMAIRA 207          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A6H5KWR5_9PHAE (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR5_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.980e-30
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRA 255
            W  SGVN+SF LC TYGR+LVVP+AL E  I KASKWRSR RIP L+WLHP+TGAGLCRSS+P+TG  +NPS  +D+ +L  IRA
Sbjct:  318 WAYSGVNKSFRLCPTYGRYLVVPAALDEAGIRKASKWRSRCRIPVLSWLHPLTGAGLCRSSQPMTGLGINPSSPEDEQLLMAIRA 402          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A5D6Y8C1_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8C1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.930e-28
Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATV-------DSTPDNPVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDG--RASITFSDIPNARAVQQNFNALVE 465
            WR   +N+++ +C TY  +LVVP++L ++ + +A+ +RS+SR PALTWLHP TGA LCRSS+P TG  L  +   D  ++  IR           S    P    VL I+DAR  L+A ++   GKGHE++ +   DG   ASITF  I N   V+ +F  L +
Sbjct:  507 WRPCALNKTYDVCATYPSYLVVPASLPDEIVAEAATFRSKSRFPALTWLHPRTGAPLCRSSQPNTGM-LRSTNAHDRELIWAIRDAALPAELAWQSAGARPKKSSVLHIVDARPELNAKSNALTGKGHESVKQYDRDGVPTASITFMGIDNIHVVRSSFAGLAQ 669          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: F0Y8Q0_AURAN (Myotubularin phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Q0_AURAN)

HSP 1 Score: 115 bits (287), Expect = 1.510e-27
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATVDSTPDNPVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDGRASITFSDIPNARAVQQNFNALVE 465
            WR +  N  ++LC TY   LVVP+AL +  +  A++WRS++R+P LTW +  +GA +CRSS+P  G         DD++   +  +  S         VLRI+D R  L+A A+  +GKGHE ++RLGG   A++ F DI N   +Q++F  L E
Sbjct:   17 WRLTETNALYALCPTYPSTLVVPAALTDAVLADAARWRSKARVPVLTWYNRASGAPICRSSQPHAGLTDKDDGDSDDDV---VEISAVSPKARGTGAPVLRIVDCRPVLNAKANAAMGKGHEVMSRLGGKESATLEFLDIANIHGMQESFRVLRE 168          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: T0QJT8_SAPDV (Protein-tyrosine-phosphatase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QJT8_SAPDV)

HSP 1 Score: 116 bits (291), Expect = 2.520e-27
Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTG-FRLNPSLLDDDNMLNGIRATVDSTPDN---PVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDGRA--SITFSDIPNARAVQQNFNAL 459
            WR + +N S+ LC TY   L VP+++ +D + +A+K+RS+ R+P LTWLHP TGA LCRSS+P +G  R+N    +D  ++  IR    +  D+   P    V+ I+DAR  ++A ++   GKGHE+      DG A  SI F  I N   V+ +FN L
Sbjct:  376 WRETELNASYELCPTYPSTLFVPTSMSDDALTEAAKFRSKRRLPVLTWLHPRTGAPLCRSSQPKSGVLRMNNK--EDRELMWAIRDAAYAPTDDLGRPKASAVVHIVDARPEINAKSNALAGKGHESAKHYDRDGVACASIAFMGIDNIHVVRTSFNVL 532          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: K3WJF8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJF8_GLOUD)

HSP 1 Score: 116 bits (290), Expect = 3.500e-27
Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIR-----ATVDSTPDNPVCKK--VLRIMDARSALSANAHRFLGKGHENIARLGGDGR--ASITFSDIPNARAVQQNFNALVE 465
            WR    N  + +C TY  +LVVP++L +D I +AS++RS+SR PALTW+HP TGA LCRSS+P TG  L  +   D  ++  IR     A       N + KK  VL I+DAR  L+A ++   GKGHE+  +   DG   ASITF  I N   V+ +F  L +
Sbjct:  542 WRHFDKNDKYKICATYPNYLVVPASLSDDIIFEASRFRSKSRFPALTWIHPRTGAPLCRSSQPNTGV-LRSTNQYDKGLIWAIRDAAIPAEAAWRSPNALPKKSSVLHIVDARPELNAKSNALTGKGHESTKQYDRDGTPMASITFMGIDNIHVVRSSFAGLAQ 704          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A6G0XXZ4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXZ4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.680e-27
Identity = 59/155 (38.06%), Postives = 91/155 (58.71%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATVDSTPDNPVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDGRA--SITFSDIPNARAVQQNFNAL 459
            WR + VN  ++LC TY R L+VP+++G+D + +A+++RS+ R+P LTW+HP TGA LCRSS+P +G  L  +  +D ++L  IR              ++ I+D R  ++A ++   GKGHE+      DG A  SI F  I N   V+ +F  L
Sbjct:  390 WRQTTVNAHYTLCPTYPRALIVPASIGDDILAEAARFRSKKRVPVLTWIHPRTGAALCRSSQPKSGV-LRTTSKEDRDLLWAIRDAAYPAFGKAKASTLVHIVDCRPEINAKSNALAGKGHESARHYERDGNACASIAFMGIDNIHVVRSSFAQL 543          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A1V9ZP43_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZP43_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.700e-27
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRAT---VDSTPDNPVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDGR--ASITFSDIPNARAVQQNFNAL 459
            WR S +N  + LC TY   L VP ++ +D +++ASK+RS+ R+P LTWLHP TGA LCRSS+P +G  L     +D +++  IR     VD     P    ++ I+DAR  ++A ++   GKGHE+      DG   ASI F  I N   V+ +FN L
Sbjct:  382 WRESTINADYELCPTYPSVLFVPDSISDDILLEASKFRSKKRLPVLTWLHPRTGAPLCRSSQPKSGL-LRIYNKEDRDLMWAIRDAAFPVDDDSGLPKSSALVHIVDARPEINAKSNALAGKGHESAKHYDRDGFTCASIAFMGIDNIHVVRTSFNQL 538          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A485LN26_9STRA (Aste57867_23261 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN26_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.620e-26
Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATVDSTPDN--PVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDGR--ASITFSDIPNARAVQQNFNAL 459
            WR + +N +++LC +Y   LVVP+++ +D + +A+++RS+ R PALTW+HP TGA LCRSS+P +G  L     DD ++L  IR    +   N  P    ++ I+D R  ++A ++   GKGHE+      DG   ASI F  I N   V+ +FN L
Sbjct:  425 WRKTTINENYALCGSYPHFLVVPASIPDDILAEAARFRSKKRHPALTWIHPRTGAALCRSSQPKSGV-LRTHNKDDRDLLWAIRDAAFAVDTNARPKPNTLVHIVDCRPEINAKSNALAGKGHESAKHYDRDGTPCASIAFMGIDNIHVVRSSFNQL 580          
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Match: A0A421FNX7_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNX7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.550e-26
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLHPVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATV------DSTPDN---PVCKKVLRIMDARSALSANAHRFLGKGHENIARLGGDG--RASITFSDIPNARAVQQNFNALVE 465
            WR   +N  + LC TY   LVVP  L ++ I  A+ +RS+SR PALTW+HP TGA LCRSS+P TG  L  +  +D  ++  IR            P N   P    +L I+DAR  ++A ++   GKGHE++ +   DG   A+ITF  I N   V+ +   L +
Sbjct:  439 WRQCDLNEQYQLCSTYPAFLVVPECLNDETIKAAATFRSKSRFPALTWIHPRTGAPLCRSSQPNTGV-LRSTSPEDKKLIWAIRDAAIPAEQASGRPRNYAMPKKNSILHIVDARPEINAKSNALAGKGHESVKQYDRDGVATAAITFMGIDNIHVVRNSLAGLAQ 603          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6601.17591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL65_ECTSI7.840e-3168.24Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar... [more]
A0A6H5KWR5_9PHAE1.980e-3067.06Myotubularin phosphatase domain-containing protein... [more]
A0A5D6Y8C1_9STRA2.930e-2840.24Protein-tyrosine-phosphatase n=1 Tax=Pythium brass... [more]
F0Y8Q0_AURAN1.510e-2738.71Myotubularin phosphatase domain-containing protein... [more]
T0QJT8_SAPDV2.520e-2740.25Protein-tyrosine-phosphatase n=2 Tax=Saprolegnia T... [more]
K3WJF8_GLOUD3.500e-2742.68Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XXZ4_9STRA4.680e-2738.06Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A1V9ZP43_9STRA8.700e-2740.51Protein-tyrosine-phosphatase n=1 Tax=Thraustotheca... [more]
A0A485LN26_9STRA1.620e-2638.85Aste57867_23261 protein n=1 Tax=Aphanomyces stella... [more]
A0A421FNX7_9STRA7.550e-2638.55Protein-tyrosine-phosphatase n=1 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6601contigF-serratus_M_contig6601:19000..19657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.1e-26
Seed eggNOG ortholog2880.D8LL65
KEGG koko:K01104,ko:K18081
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
EggNOG OGsKOG4471@1,KOG4471@2759
EC3.1.3.48,3.1.3.64,3.1.3.95
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.0494773-CDS-F-serratus_M_contig6601:18999..193651622932028.0494773-CDS-F-serratus_M_contig6601:18999..19365Fucus serratus maleCDSF-serratus_M_contig6601 19000..19365 -
1690964109.9102855-CDS-F-serratus_M_contig6601:18999..193651690964109.9102855-CDS-F-serratus_M_contig6601:18999..19365Fucus serratus maleCDSF-serratus_M_contig6601 19000..19365 -
1622932028.076309-CDS-F-serratus_M_contig6601:19558..196571622932028.076309-CDS-F-serratus_M_contig6601:19558..19657Fucus serratus maleCDSF-serratus_M_contig6601 19559..19657 -
1690964109.9318662-CDS-F-serratus_M_contig6601:19558..196571690964109.9318662-CDS-F-serratus_M_contig6601:19558..19657Fucus serratus maleCDSF-serratus_M_contig6601 19559..19657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6601.17591.1prot_F-serratus_M_contig6601.17591.1Fucus serratus malepolypeptideF-serratus_M_contig6601 19000..19657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6601.17591.1

>prot_F-serratus_M_contig6601.17591.1 ID=prot_F-serratus_M_contig6601.17591.1|Name=mRNA_F-serratus_M_contig6601.17591.1|organism=Fucus serratus male|type=polypeptide|length=155bp
WRSSGVNRSFSLCQTYGRHLVVPSALGEDDIVKASKWRSRSRIPALTWLH
PVTGAGLCRSSEPLTGFRLNPSLLDDDNMLNGIRATVDSTPDNPVCKKVL
RIMDARSALSANAHRFLGKGHENIARLGGDGRASITFSDIPNARAVQQNF
NALVE
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mRNA from alignment at F-serratus_M_contig6601:19000..19657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6601.17591.1 ID=mRNA_F-serratus_M_contig6601.17591.1|Name=mRNA_F-serratus_M_contig6601.17591.1|organism=Fucus serratus male|type=mRNA|length=658bp|location=Sequence derived from alignment at F-serratus_M_contig6601:19000..19657- (Fucus serratus male)
TGGCGTTCCAGCGGGGTAAACCGAAGCTTCTCTCTGTGCCAGACGTACGG GCGCCACTTGGTGGTCCCTTCTGCCTTGGGAGAAGATGATATCGTAAAGG TGGCGTGATCGATGAAATTCGTGAGCCTGAGTGCTTATCGATGAGGTGGA AGCGACAGCGGTATCACACAGGTCATTTCTCGTTCCTAATACTACGGAAA ACACCGTACTCCTAGTCTCACGCGCCTTCCCAACCCAACCGCCCTCACGC GGCATGTGTTCACGTTGCCGTCATTCCTATAATCGCTTCCAGGCTTCTAA ATGGCGCAGCCGGAGTCGTATCCCCGCGCTTACGTGGCTTCATCCTGTGA CTGGAGCTGGCCTCTGTCGCTCTAGCGAGCCCTTGACGGGGTTCAGGCTG AACCCGTCCTTGCTCGATGACGACAATATGCTAAATGGGATTAGAGCGAC CGTTGATTCAACCCCTGACAATCCTGTTTGCAAGAAGGTGCTTCGAATCA TGGACGCTCGGTCCGCGCTTTCGGCAAACGCCCATCGATTCTTGGGCAAG GGCCACGAGAACATCGCGCGACTGGGCGGGGACGGGCGTGCGTCAATCAC CTTCTCGGATATCCCCAACGCTCGGGCAGTGCAGCAGAATTTCAACGCAC TGGTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6601:19000..19657-

>mRNA_F-serratus_M_contig6601.17591.1 ID=mRNA_F-serratus_M_contig6601.17591.1|Name=mRNA_F-serratus_M_contig6601.17591.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig6601:19000..19657- (Fucus serratus male)
TGGCGTTCCAGCGGGGTAAACCGAAGCTTCTCTCTGTGCCAGACGTACGG
GCGCCACTTGGTGGTCCCTTCTGCCTTGGGAGAAGATGATATCGTAAAGT
GGCGTTCCAGCGGGGTAAACCGAAGCTTCTCTCTGTGCCAGACGTACGGG
CGCCACTTGGTGGTCCCTTCTGCCTTGGGAGAAGATGATATCGTAAAGGC
TTCTAAATGGCGCAGCCGGAGTCGTATCCCCGCGCTTACGTGGCTTCATC
CTGTGACTGGAGCTGGCCTCTGTCGCTCTAGCGAGCCCTTGACGGGGTTC
AGGCTGAACCCGTCCTTGCTCGATGACGACAATATGCTAAATGGGATTAG
AGCGACCGTTGATTCAACCCCTGACAATCCTGTTTGCAAGAAGGTGCTTC
GAATCATGGACGCTCGGTCCGCGCTTTCGGCAAACGCCCATCGATTCTTG
GGCAAGGGCCACGAGAACATCGCGCGACTGGGCGGGGACGGGCGTGCGTC
AATCACCTTCTCGGATATCCCCAACGCTCGGGCAGTGCAGCAGAATTTCA
ACGCACTGGTGGAGGCTTCTAAATGGCGCAGCCGGAGTCGTATCCCCGCG
CTTACGTGGCTTCATCCTGTGACTGGAGCTGGCCTCTGTCGCTCTAGCGA
GCCCTTGACGGGGTTCAGGCTGAACCCGTCCTTGCTCGATGACGACAATA
TGCTAAATGGGATTAGAGCGACCGTTGATTCAACCCCTGACAATCCTGTT
TGCAAGAAGGTGCTTCGAATCATGGACGCTCGGTCCGCGCTTTCGGCAAA
CGCCCATCGATTCTTGGGCAAGGGCCACGAGAACATCGCGCGACTGGGCG
GGGACGGGCGTGCGTCAATCACCTTCTCGGATATCCCCAACGCTCGGGCA
GTGCAGCAGAATTTCAACGCACTGGTGGAG
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