mRNA_F-serratus_M_contig1232.1758.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1232.1758.1
Unique NamemRNA_F-serratus_M_contig1232.1758.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 2.180e-109
Identity = 169/237 (71.31%), Postives = 195/237 (82.28%), Query Frame = 1 
Query:    1 MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 711
            MK T+A  A L   A AF  PMP+   AR+ +G+    MANS++IPFMPQPE LDGT+PGD+GFDPLGLS + IDF+E IVPGAAVMREEG    SPVDTLYWMRE+ELKHGR+AQLAVVGWI VDQG+RFPG +Y+AIS SV AHDPMVA+GNMT++LLVV +LE++ G A+FGAA+GSGR PG+FG DP NL  NP KKARYEL+EIQHCRLAM AIGGIATQAVLNGG FPY G
Sbjct:    1 MKTTLASLAALVGGACAFTAPMPMHRAARSPAGAL--SMANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.080e-72
Identity = 131/226 (57.96%), Postives = 162/226 (71.68%), Query Frame = 1 
Query:   37 ASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSP--VDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYV 708
            A ASAF    PL G  R+SS  S+SMMA S+SIPF PQP  LDG+LPGDVGFDPLGL+++  D+ + IVP  A MR+     D P  VDTLYWMRE+ELKH R+A LAVVGW+ VD GLR PG KY  +S ++ AHD MV+ GNM +ML   ++LEL++G A+F AA GSGR PG+F  DP  L  +  K ARY+LSE+++ RLAM A  GIATQAVL G +FPY+
Sbjct:   12 AGASAFQAASPLKGAVRSSS--SMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRK----GDEPLVVDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.990e-54
Identity = 102/198 (51.52%), Postives = 132/198 (66.67%), Query Frame = 1 
Query:  124 SRSIPFMPQPEKLDGTLPGDVGFDPLGLSALK-IDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKA-RYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 711
            S ++PFMP+P  LDG++PGDVGFDPLG S++  +   ++I P A++   E      P+ TLYWMRE+ELKHGRI  LAV G+  VD G RFPGAKY+ ++ SV AHD MVA+GNM  + L V ++EL+S VA+  AA GSGR PG+F  DP       +K+  R  L+E+ H RLAM A  G+ TQAV  G  FPY G
Sbjct:   36 SAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSE------PLPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADLT-SVTAHDAMVASGNMGFLFLAVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPYQG 226
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.350e-52
Identity = 99/198 (50.00%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:  112 MMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 705
            + A S+++PF+  P+ LDG+LP DVGFDPL LS +  DFT ++VP      +E  T    +  L W RE+E+KHGR A LAV+GW+ VD GLR P AKY+  + +V AHD  V +G+MT+ LL +  LE++ G  ++  + GS RA G+F FDP  L  +P K ARY++SEI++ RLAM A GGIATQAVL  G FPY
Sbjct:   31 LAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVP---TKWDESRTG---LSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 177 bits (450), Expect = 4.420e-49
Identity = 101/196 (51.53%), Postives = 128/196 (65.31%), Query Frame = 1 
Query:  118 ANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 705
            A S+S+PF+  P  LDGTLPGDVGFDPL  + L  +  EVI+P  ++     AT+  P+  +YWMRE+ELKHGR+  LA+VG++ VD G+ FPGA+Y  +S S+ AHD MVA+GNM  MLL V VLELLS V V  AA GSGR  G+F +DP            +E +EIQH RLAM A  G+ TQ+ L    FPY
Sbjct:   30 AKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSI----SATESLPM--VYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 5.000e-49
Identity = 115/241 (47.72%), Postives = 139/241 (57.68%), Query Frame = 1 
Query:    1 MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSA-LKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPD---KKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 711
            M  T+A    + ASASAF+ P  L   A ++SG S+     S+S+PFMPQP KLDGT+ GD GFDPLG S  + +DF                           +RE+ELKHGRI QLAVVG+   D G R PGA+++  S++  AHD  VA G M  +LL V   E +S VAV     GSGR PG+FGFDP NL   P+   KKA  EL EI HCRLAM A GG+ TQAVL    FPY G
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRVASSNSGMSM-QATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDF---------------------------LREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIA--AHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 177 bits (450), Expect = 1.410e-48
Identity = 101/210 (48.10%), Postives = 136/210 (64.76%), Query Frame = 1 
Query:   85 RTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNL-KDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNG-GTFPYV 708
            R SSG S  +   S+S+PF+  P  LDG+  GD+GFDPL LS +  DF++++VP     R   AT    + TLYWMRE+E+KHGR+A LAV+G + VD G R PGA ++ +  ++ AHD MVA G M ++LL     E+L G AV+ AA GSGR PG+F  DPF+L K +P +K  ++  EI++ RLAM  I GI TQA L G   FPY+
Sbjct:   30 RISSGPSA-LHLKSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVPRQFSGRPSSAT----LATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234
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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.830e-46
Identity = 100/225 (44.44%), Postives = 130/225 (57.78%), Query Frame = 1 
Query:  124 SRSIPFMPQPEKLDGTLPGDVGFDPLGLSALK-IDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNL-KDNPDKKARYELSEIQHCR-----------------------------LAMFAIGGIATQAVLNGGTFPY 705
            S+S+PF+   + LDGT+ GD  FDP+G S ++  D++ ++VP       EG      + TLYWMRE+ELKHGRI  LA +GW+  D G RFPG  YS IS ++ AHD MV  GNM  +L V+ V+E+LSG A++ AA GSGRAPG++GFDP  L + N  KKA Y L EI++ R                             LAM    GI TQA L G +FPY
Sbjct:   57 SKSVPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPAWFNKEREG------ISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
[Close]
BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.810e-42
Identity = 107/230 (46.52%), Postives = 129/230 (56.09%), Query Frame = 1 
Query:   31 LAASASAFMNPMPLAGTARTSSG---SSVSMMAN-SRSIPFMPQPEKLDGTLPGDVGFDPLGLSA-LKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 705
            L  SA+AF  P   AG     S    S V+MMA  S SIPFMP+PEKLDGT+PGDVGFDPLG S  + +DF                           +RE+E+KHGRI  LAV GW+ VD GL  PG  ++  SL  +AHD  V  G M+ +LL   + E +S V V     GSGR PG FGFDP N   +   KA+ EL+EI++ RLAM A  GI TQA L G  FPY
Sbjct:   12 LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDF---------------------------LREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSL--EAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
[Close]
BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.740e-42
Identity = 99/225 (44.00%), Postives = 128/225 (56.89%), Query Frame = 1 
Query:   31 LAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 705
            LAA A AF  P+       T  G+   M A S +IPF+P+P +LDG+L GDVGFDPLG+S                       D  P+D   ++RESELKHGRI  LAV G+   D G + PG +++  S   DAH+  V+AG MT+M   +  LE +SG+A+  +  GSGRA G++G DP  L D PDK A  ++ EI H RLAM A  G+ TQAVL    FPY
Sbjct:   22 LAAPAVAFQGPVRA-----THRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVS-----------------------DWMPLD---YLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASA--DAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A4_ECTSI2.180e-10971.31Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CGA6_9STRA1.080e-7257.96Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2RV11_9STRA2.990e-5451.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7UAI7_9STRA4.350e-5250.00Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
F0YCE3_AURAN4.420e-4951.53Uncharacterized protein LHC26 n=1 Tax=Aureococcus ... [more]
D7FWB9_ECTSI5.000e-4947.72Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6V1NRI4_HETAK1.410e-4848.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4L863_9STRA1.830e-4644.44Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A836CK85_9STRA1.810e-4246.52Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2S869_9STRA3.740e-4244.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1232contigF-serratus_M_contig1232:36171..44772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue4.1e-90
Seed eggNOG ortholog2880.D7G3A4
Preferred nameLhcr11
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2DDP1@1,2S5ND@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_005670.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1559
Cds size717
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.5349805-UTR-F-serratus_M_contig1232:36170..362231622929148.5349805-UTR-F-serratus_M_contig1232:36170..36223Fucus serratus maleUTRF-serratus_M_contig1232 36171..36223 -
1690962725.2339442-UTR-F-serratus_M_contig1232:36170..362231690962725.2339442-UTR-F-serratus_M_contig1232:36170..36223Fucus serratus maleUTRF-serratus_M_contig1232 36171..36223 -
1622929149.3374352-UTR-F-serratus_M_contig1232:36238..367821622929149.3374352-UTR-F-serratus_M_contig1232:36238..36782Fucus serratus maleUTRF-serratus_M_contig1232 36239..36782 -
1690962725.2437816-UTR-F-serratus_M_contig1232:36238..367821690962725.2437816-UTR-F-serratus_M_contig1232:36238..36782Fucus serratus maleUTRF-serratus_M_contig1232 36239..36782 -
1622929149.3477292-UTR-F-serratus_M_contig1232:36793..370381622929149.3477292-UTR-F-serratus_M_contig1232:36793..37038Fucus serratus maleUTRF-serratus_M_contig1232 36794..37038 -
1690962725.2526286-UTR-F-serratus_M_contig1232:36793..370381690962725.2526286-UTR-F-serratus_M_contig1232:36793..37038Fucus serratus maleUTRF-serratus_M_contig1232 36794..37038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929149.3565156-CDS-F-serratus_M_contig1232:37038..372021622929149.3565156-CDS-F-serratus_M_contig1232:37038..37202Fucus serratus maleCDSF-serratus_M_contig1232 37039..37202 -
1690962725.2697296-CDS-F-serratus_M_contig1232:37038..372021690962725.2697296-CDS-F-serratus_M_contig1232:37038..37202Fucus serratus maleCDSF-serratus_M_contig1232 37039..37202 -
1622929150.2169514-CDS-F-serratus_M_contig1232:38088..382861622929150.2169514-CDS-F-serratus_M_contig1232:38088..38286Fucus serratus maleCDSF-serratus_M_contig1232 38089..38286 -
1690962725.2784884-CDS-F-serratus_M_contig1232:38088..382861690962725.2784884-CDS-F-serratus_M_contig1232:38088..38286Fucus serratus maleCDSF-serratus_M_contig1232 38089..38286 -
1622929150.2293966-CDS-F-serratus_M_contig1232:39648..397691622929150.2293966-CDS-F-serratus_M_contig1232:39648..39769Fucus serratus maleCDSF-serratus_M_contig1232 39649..39769 -
1690962725.2871382-CDS-F-serratus_M_contig1232:39648..397691690962725.2871382-CDS-F-serratus_M_contig1232:39648..39769Fucus serratus maleCDSF-serratus_M_contig1232 39649..39769 -
1622929150.2417088-CDS-F-serratus_M_contig1232:44538..447721622929150.2417088-CDS-F-serratus_M_contig1232:44538..44772Fucus serratus maleCDSF-serratus_M_contig1232 44539..44772 -
1690962725.2991588-CDS-F-serratus_M_contig1232:44538..447721690962725.2991588-CDS-F-serratus_M_contig1232:44538..44772Fucus serratus maleCDSF-serratus_M_contig1232 44539..44772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1232.1758.1prot_F-serratus_M_contig1232.1758.1Fucus serratus malepolypeptideF-serratus_M_contig1232 37039..44772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1232.1758.1

>prot_F-serratus_M_contig1232.1758.1 ID=prot_F-serratus_M_contig1232.1758.1|Name=mRNA_F-serratus_M_contig1232.1758.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQ
PEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDT
LYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMV
AAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDK
KARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVGN*
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mRNA from alignment at F-serratus_M_contig1232:36171..44772-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1232.1758.1 ID=mRNA_F-serratus_M_contig1232.1758.1|Name=mRNA_F-serratus_M_contig1232.1758.1|organism=Fucus serratus male|type=mRNA|length=8602bp|location=Sequence derived from alignment at F-serratus_M_contig1232:36171..44772- (Fucus serratus male)
ATGAAGGCTACTGTTGCTTACTTTGCTCCGCTCGCAGCGAGCGCGTCGGC
TTTCATGAACCCCATGCCACTCGCTGGTACTGCTCGCACCTCGTCGGGGT
CGTCGGTGAGCATGATGGCCAACAGCAGGTCTATCCCATTCATGCCTCAG
CCGGAGAAGCTGGATGGAACCTTGCCTGGGGACGTCGGGTTCGACCCGCT
CGGCCTCTCGGCCCTCAAGATTGACTTCACCGAGGTAGGTTTGGAGTTTA
TACCCAAGGCGTCAATCTGCATCCCGTTTGAATGAAACGTACTACTCCGG
AGTATTCGAACACAACAGCAGTACAAACACGGTACTACTACTACTGTACT
GTACATATAAAATCTGTAGGATATATTTAGTTCAATACTTCACCGAGGTA
GGTTTGGAGTTTATACCCAAGGCGTCAATCTGCATCCCGTTTGAATGAAA
CGTACTACTCCGGAGTATTCGAACACAACAGCAGTACAAACACGGTACTA
CTACTACTGTACTGTACATATAAAATCTGGAGGATATATTTAGTTCAATA
CAACAGCAGTACAAACACAGTACTACTACTACTGTACTGTACATATAAAA
TCTGTACGATATATTTAGTTCAAGTAATCCAAACAGCAGCAGTACTAGAC
TACTGTTTGTACTATTGTACTGGTACAACGTACAACATATTATGAAATGT
GTCTTACATGATGGACACGGAGTTCTTGTCCAAGATTTTACACCCGTACC
TTGCATTCGTCCAAGACTTTAGACCCCCAATGAGGACAGGAACGTATCTG
ATTTTCGGCAAATTATATGTTCTCCCTACATCTCTACAGCATGCCAGTAC
AGTACTTTAGTATGTTCGTTCTCCTCGGGCGCTGCCCGTTCCTGCTGTTT
TGAGAGGTACATAGTACAGTACAGTACCGACAGTACTGGTATAGTATAAA
TATTATTCCTTATTCCTCTGGATAGTCTTTTTAATGTGCAACAACATTCA
AAACTACCATTCAAAACAGTACTGAGATCAAACAGTAAATGTTGGTTGCT
TACGTCGACACATACATGTCTGCGGATTTTAAAAGAAAATTCTAAACGCA
TCTATTAATAGACCTTGTGGAGCATCCCCAGTCCGGGGGCAACATGTCAA
AACGCTTAGATGGGATTATAGGTTTTGTAGGAACTGTTTCGTCCGCGGGT
GTGGAGAGTCGCTGGCACACTACGAGTAAATGTAATTTCATACGAGTATA
ATAGTCCATGCTGTACAGAGTATTAATAGTGTAATCAAAGCCATCCCCCT
ACCTTCTAATGCCTCAGTAGTCTACCAAGTGTACTTTACTCTCGACTAAG
CCAAATTTTTAGGCACGAAAGTAGTCTACCCTATATGCTGTATTTTTTTA
TTTTTTTATTTTTTTTTTTTTGTTCTCCGAACGAGCAGCGCGCACGGGGG
GGGGGGCGCTGCCTGGCGCTGAATGTGAGAAACAACAACAACAACAACAG
TATTAATAGTGTAATCAAAGCCAGCCCCCTACCTTCTAATGCCTCAGTAG
TCTACCATGTGTACTTTACTCTCGACTAAGCCAATTTTTCAGGCACGAAC
GCGGACAGGGGAATGTTCATTGGCAACCGTGCCCGGTTGGTCCATACTCC
TGCTATATGTGGACCAAATGTGTTGCACCAGTGCTGCTGCCGTTGTTCGA
GTATCTAGATTGCACCGGAATCCTACATCTACCGCCTTATACCTATACAC
TACTATTCATATTAATACATAAACTACAGACAGTTAGTACCTGGTATCAA
TATATAATGTACCAGGTACGCTGTTTGTACGTACATACCTGTTATAGCAT
CTAAACCTTAACCTTATGAGCATCTCCCAGAGGGGGGGGGAAATTGTCAA
AACGCTTACCAGGTAGGTGGGAACATAAGCTGCAAAGACAAAACTTCTCC
ATGGCATTTAAACGGGTTCCCCGATGGTAGTTACATTGGGTCAACAGTAT
AATATCGGGGAGAAGCCCACCGGTATACGGTACACTTGTATTAATCACTA
TGTGCTACCGTATATAACATGCAGAGACACCAGAACAGAGGCAAAAAGAC
ATGACATGATAAAGCTGCCGCTGGATACAGCTCAATTTGTTACTGTACAT
CGGGTTTGGGATCGGACGGGTGTCTACACTATTTCCGTATAATTAGCCAT
CGAACAATTACAGATTGAGAAGGCAGGCGACAAGGTTAAGGTTTTGGTTT
CTGATCAATTATCAGGTGAAAATAACTGCTAGAGGCTAAACCGGTACAGT
ACTTTCAACATGCACACTGATAGCAAGTGTGTGTGGGAAATATACGCGCA
TATTAATTGGTCCATAGGGACCTGCCAAGGCAGCGCCCGTTTGGAACCAC
CTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCAT
CGGTACGCAATTGCGTGACCCGATAAACTCGGGACTAAGCCGATGGCGTA
TGGCGGTTTAAATAAATAAATAGACGCCGCCGCGGAACTCGGAATGACGC
GGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATTATCAGGCGCGAA
CGGAGACAGGGGAAAAATCGCAAATCATTTTCCCTGTTCAGCTGACCACG
AGCAGGATTGGCAACCTTACCCGGTTGATCCTTACCCTTGCTACTATAGA
TTATAGTCTATGTGATGACCATACCGTACATACATAGACTAGGAGCCTTT
TTTTTTATTGTGGGCAAGGTTTAGGGCTGTAAATTTGCATATATGGTCCA
CATTGCGGTAAGCGAGTCGTAGAGTCCATCCCTAGTCGCTTAATGCTTTT
ACGCTACAGCGTAGCGATTGGAGGAAGTGGATTGGTGACAGCCAATAGAG
CATGAGAGCTCGGGCGCCGCCATTTATTGTGGGCAAGAATTAGGGCCGTA
AATTTGCAGACGTGGTCCACCTCGCGGCAAGCAAGTCGTAGGGTCTATCG
CTAGTCGCTAATAAAAATAAAAAAATAAACAAGGAAGATACGGAGCAAGT
AGTATTATCTATGTCGTACAATTTCTGGTGCAAATAGTAGTCAGGACGAC
CACCACAAGACAGTATACTGTAGTAAGTATTATTTATTGTATGTAGAATC
TGTGAAAGCGAAAGAAAGAAGGTGCTGTTTATTAGTCTTATAGTTATGAC
AGGAGTAGCTATTATATGAATAACTGTCAAACGGAGAGGGCAAAATGAGT
CTACAATTATATTCATGGTATTTACAGAGGTTTTGACAGGAAGAGGTAAG
GTGTTCAAAGAAAAATCTGAACGCATCGAGACCTTCTGAGCTATGAGATA
TCCCACACAGAGGGGGAAAAGTCAAAACGCTTACCAGTAGGTGAGATCAT
AGGCTGCAAAGACAAAACATCTTCATGGCATTTAAACGGGTTCCGCGACG
GCGTCCATCTTCCACATACACACGTCAACCGCCATCGGGTCAGTCCCTAT
TACATTACATTACATTAGATTACATTATATTAGAGTTTATCGGGTCACGC
GATTGCGTTCCGATGGCGTTCACTGCCAAGAGTCTGTCGGCACAGGGCCA
GTAGTCCTCGAGGTAGTTCCGAACGGGTGCTGCCTTTTCAGGTGTGACCA
TGGACTATGACCAATTCATGTTCGCCTGTTTTTTCCCACAGATACCATTG
TCCCGCATATATATGTATAATCATCACATAAAGCAGAGAATGGATCAACC
GGGTAAGGTTGCCAATTCTGCTCGTGGTCGGCTGAAGAAGGAAAATGAAT
ATTCCCTCGTCCCCGTGCGTGCCTAAGAATTTGGTCTCGCGAGACGGGTT
AAGCCGCCCCGTCCCGCGTCAGCCTGATCATCTCCATACTCCGGAAATCG
GCATGTGGAATAAAGAAAGTATCAGAGACGGCGTACTTGAATTTATAATT
TATCAATCCTCGTTTCTCTGATCTATTTATTAATAATAGAGATATCACGA
CATAATAGTGTGTGTTAGACAACTCAAGATTTGTTGGTAGATACTGGTAC
ATTACAACCGATCTAAATGGCATACCCGTGGAGCTAGGCAATGTGTCTGA
GGCTTGTTTGAAGAAATATCTGAAGGCATCATCATGATCATCATCAGAAC
TATCATGATGTATGTAATCATTGTGAGCATCCACCTTCGGGGCATTAGAC
TATTATTATAGTAGACTATTATCATTATTATCAATAGACTATTAATATAC
TATTAGTAGACTAATTGTCAAAAAGTTTATGCTCTAGGTGGAAACATACA
AAAATTTGTCAAGATATTAAAAGGGTTTCCCAATGTTTATCGCCTAGGGT
CACCAGTATCTTATCGGGGAGAAACCCAGCGTTATACTTTACACTTACAT
TAATCGCCATGCAGGACCGCCAAACAAAACAAAAGACATGCGAAACGTCT
TCTAGTATATCACCCGTTGGTCTTGTCTCTTTGTATTGTATTGTATTATA
TTAGTACAGTAGTACAGTAGTATTAATAGGATCACCCGTCAACTTCTCTC
TGTCATTCAAGCACCTCTCTTGATATTGATTGATACCAGTTATAGTATAG
GCGCTATAGTGAGTATTAATAGCTGTTAATAACAGGACTATTCACAGTCA
CTACAGCAAGTTATGTGTCTCTGTTGCACCAGCAGTAAGTATAACACCGA
GACACAAACGCAAGCCGTCAAGCCGTGCGGTACCGTACCGCAGAATGGCA
CAAGGCGAGGCAAACTCATCCACCATTATTATAGTAATAGTATGTAGTAC
GTTAGTATTAATAGTAATAGTCCTCTTCGCCATCATGGAGGCAGGAATCA
TTGAAAGCAGCGATTAGACTGTATAGCTATAGAGCACACGTACTTGTACT
TGAACGAGAAATCAGCAAATCGGCAATTAAATCGGGGGGAAAATACCTTG
TGCTGTGAATAATATAAAAGATACACATATCATACTATGTATACTGTATA
CAGGTTATTGTTCCAGGAGCGGCCGTAATGAGGGAAGAAGGAGCCACCGA
CGACTCTCCCGTGGACACCTTGTACTGGATGCGCGAGTCAGAGCTCAAGC
ACGGCCGTATCGCACAGCTCGCAGGTAAGTAAAGTAAAGCCTCTAGTCTA
CAGTGTACAGTCTACAGTACAGTACATTTAGGCCCTCTTGACAGGTTTCT
ATGGTACTTGATAGGCCGTTTTTGCTTGTTGAAACAGAGGAAGAACATCA
CACCACGCTTTTTGTTTGTGTGTCGGTCCCTTGAAGCAGAGGCGCGTTCA
GTGCTCCGCCTTCGTAGAAAACCCCACGGAGATTCCACGACTGTTAGACT
CATATAATAGCGCCGGATCATAAAAAATTATTAATATTGATAGTACACTA
GTGTATCGAGTATAGTACTTGATTCCTCAAGGGAGCACCGCGTCAACGAC
GTGATTAGCTACATCGCTCAAAACAGTACAGTAGTGTATCAAGTATACAG
TATATAGTCTAGACTAAACAGTTTACTTACCTTAGCGAGGGATCAAGTAC
ATGATTGTCGTTCGTAACATGTCGCTGGACATTTACTCTCAAGTATAGTG
TAGTAGAGTGCCCCAATGAACCACTTGAATCATTAGAGAACCCTGGCGTT
TTTGGCGTCGATTATACTGTTGATAGACAGGAACCTTGCTTATTAGATTT
TCTTGTTTCTTGTTTTTTGTATTGGTCCTGTAGCTCTATTATTTGTTGCG
ACACATCCAATATTAAGACTGTATTTATACTGGATACTGTATGAAAGTAT
TAATATAAAATAATTCTCAACGAGCGCCCCAAGCGAATCATATTATGAAA
CTTGATACCAATGACTTGCAATCATCTATCCCATATCGCATAACGGTATC
TCTAGTCTATGATATGATATAATAGCGTGCCGTACGGTACTATACTATAC
GATAATAGAAGAGTATCCTCTTTCGACAACACAATGCTCTTCTTCAAACA
GCAGCCGTTGTGCGATGCTCTGAGTTTTGATTAGGTGATATCCGATCATT
ATTATTATTACTATTATTAATGGCGTGGTACGGTACGGTACGGTACGGTA
CGGTACGGTAAACCGGAAGCCTCATTCCCATGCCCCCGTGAGACGTACAG
TGATGCGAACCTTTTGATGGCCGACTTCGCGACACGTATGGTTTGGGGCC
CGCCCATCCTCGACTCGAGAAGTGTCTCAAATCGTGCTTGAATATCGTGC
TCTAAAACACTCCCAGCCGATTTTTGTCCCTTAAAGTCGTTCGTAGCTCG
TCGACACCATCATCACAATCTTGTTATAATATAACATGATATAATATATA
AAACTAAGTATATATTAGCCCCTCCTTTCTCTATGGCCAAATTTACATAC
TGGTATAATAGTACTACAGAGTACTGTTCCTATTTCATCAGTACTGCGTT
CCCTATGCCGTATTTTGATGTTCGTATCGCTGGCAGTGGTGGGTTGGATC
TTTGTGGACCAGGGGTTGCGCTTCCCCGGCGCCAAGTACTCTGCGATCTC
CTTATCCGTCGACGCCCACGACCCCATGGTGGCGGCGGGCAACATGACCA
TCATGCTCCTGGTCGTAATCGTGCTGGAGTTGTTGTCAGGGGTGGCGGTG
TTCGGTGCGGCAACTGGATCTGGTCGCGCCCCGGGTGAGATGGAGATTGC
TCTTTTCTCTGACATCATTGTGTGACAAAATTACATGAAATACACGTATG
TAGCCTCGTTTCCTCAGGCATCATTGTGATTTGTCTACTGAAAAAATATA
AGTATAAATAATACAGCATAGGCGACATTTGGGCGACGCGATCTGAAAAC
GGACTACAGCATCCTATAGTTCACAACGTACTGTGGAAATAAATTGTTAC
GTAACGCCCTTATTTCGGTATGCACTATAGATTCAGAATCTCAATTTTCA
TGACGTACGAATCTTACGCCGTCCTTTGAAAAGGGGGTCGATTTGGACGA
ATAGCGTCTAACCGGGGCAGAGAATCGTCAACTAGCAACTTGGACCTCAG
TTGAAGTTGACATGACATCCGTTGCTTTGACGTCCTCCTCCTCGGTTCGG
GCGTTAGCTTCAGGACGCGCTCTTTTTTTTTTGTAGCGCCAGCCAGATTA
TAGTGTTGGAGCATCAACCGTGTAGCTCTATGGTTGTAGAATAGAGCTAA
GCTGGAGTCATCTGTAAGGCCTTGGTTCTGTCATGTCAAGAATGATTCAT
ACATTTCTTGAGCAGGCCTCTGAAGTTGAGGCATGGCTGTCCCTTGCTTT
TAATTTCAATGGAGACGCTTGCCGCCACGACGTTTCATCGTTGAAAAGGC
AGGCTAGATAGAATAGAACACAGTTCAGCATCTTTCTGAGTGGCTTGGGA
GCTTAGACCCCGCAGGTCTAAATATACTCTGAAATGTGAGCTTACAACGC
AAGGCTGTGCCACCAGAAACCACTTCAACAAGTTCTTGTTTCGTGAATCG
CTTGTGACAAAAATATACCTCCCTCATCTCTATGCACGCCTCGCTCGTCC
TGACATTGGAACTCCCGAAGGAGAGTTCGGTTTCGACCCGTTCAACCTCA
AGGATAACCCCGACAAGAAAGCGCGATACGAGCTGAGCGAGATTCAGCAC
TGCAGACTGGCCATGTTTGCCATCGGTGGCATCGCGACCCAGGCTGTCCT
CAACGGCGGAACCTTCCCCTACGTGGGCAACTAGAGAGCATTAGAGCAAG
CTCCCAATCGAGTCTGTCGGGAGCGATTGGGGTGAGCTACGTACTTTTTA
CGAGTTGCCACGTTTTGAACGATCTTGTATGGCGGGCGGAGGAGCAACCT
TTGGGCGGATAAGACCAACGGAATGCCTCATGAACGCTACCTGCATGATG
GCTCTCGTCAATCTTTCGCAAAAAATGTAAATGGGCCATCTAGCTACGGA
TGGCCTTCCAAGGGGTTTTGGGATATACTGTATACTGTAGACGGGCAGCG
TTGTTTATAAGAGGGGCGCGGGGACATTAGATGATGCGAACGACAAACGA
CCTTAGGCTTGGTTCTACTATTATTGTCAAGTACGGTAGCAATCTCCGAG
AGGCTTGCACGTGGAACACCCTTGGCTTGCTTCCCTGGGAAACCGTAAGC
TCACATCTCGTAGGCCGACGAGAGGCGTGCATTTCACTATTTTTAAGGGC
GCGATCGAACGCTGTATCAGTTTCATAACGCAATTGCGTGCGCGTTAGAT
CACGTCCGGAGTAGAGCGTTTCGCCTATTGAATCAAATATCATAATCAAA
TGACACCACGCCATATCTCCGTGTTATAAGTCAAGGTCAAGGTCAGCAAC
CGCCGAAATGTTCAGGTTTCCTCGACGAGCGTGAAGGTTGAAGAGCTGGC
CTTGCTGAGGTTTTTTCAACTCATTAACCGTGGCAGTTTCCCCTATTCTT
GCTCTAGCACCGTCGACAAATTGACTGCATGCCACGGTAGAGGCTGACAC
CATCATAAGATACCAAGTAGAGCCTGGGCATAAGGCGTTCCCATGATAGG
CGTTTCTTTACAGCGGGAATGCGAGGTTTTCCCACCTCCCCCCACTCGCG
CC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1232:36171..44772-

>mRNA_F-serratus_M_contig1232.1758.1 ID=mRNA_F-serratus_M_contig1232.1758.1|Name=mRNA_F-serratus_M_contig1232.1758.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig1232:36171..44772- (Fucus serratus male)
ATGAAGGCTACTGTTGCTTACTTTGCTCCGCTCGCAGCGAGCGCGTCGGC
TTTCATGAACCCCATGCCACTCGCTGGTACTGCTCGCACCTCGTCGGGGT
CGTCGGTGAGCATGATGGCCAACAGCAGGTCTATCCCATTCATGCCTCAG
CCGGAGAAGCTGGATGGAACCTTGCCTGGGGACGTCGGGTTCGACCCGCT
CGGCCTCTCGGCCCTCAAGATTGACTTCACCGAGATGAAGGCTACTGTTG
CTTACTTTGCTCCGCTCGCAGCGAGCGCGTCGGCTTTCATGAACCCCATG
CCACTCGCTGGTACTGCTCGCACCTCGTCGGGGTCGTCGGTGAGCATGAT
GGCCAACAGCAGGTCTATCCCATTCATGCCTCAGCCGGAGAAGCTGGATG
GAACCTTGCCTGGGGACGTCGGGTTCGACCCGCTCGGCCTCTCGGCCCTC
AAGATTGACTTCACCGAGGTTATTGTTCCAGGAGCGGCCGTAATGAGGGA
AGAAGGAGCCACCGACGACTCTCCCGTGGACACCTTGTACTGGATGCGCG
AGTCAGAGCTCAAGCACGGCCGTATCGCACAGCTCGCAGGTTATTGTTCC
AGGAGCGGCCGTAATGAGGGAAGAAGGAGCCACCGACGACTCTCCCGTGG
ACACCTTGTACTGGATGCGCGAGTCAGAGCTCAAGCACGGCCGTATCGCA
CAGCTCGCAGTGGTGGGTTGGATCTTTGTGGACCAGGGGTTGCGCTTCCC
CGGCGCCAAGTACTCTGCGATCTCCTTATCCGTCGACGCCCACGACCCCA
TGGTGGCGGCGGGCAACATGACCATCATGCTCCTGGTCGTAATCGTGCTG
GAGTTGTTGTCAGGGGTGGCGGTGTTCGGTGCGGCAACTGGATCTGGTCG
CGCCCCGGTGGTGGGTTGGATCTTTGTGGACCAGGGGTTGCGCTTCCCCG
GCGCCAAGTACTCTGCGATCTCCTTATCCGTCGACGCCCACGACCCCATG
GTGGCGGCGGGCAACATGACCATCATGCTCCTGGTCGTAATCGTGCTGGA
GTTGTTGTCAGGGGTGGCGGTGTTCGGTGCGGCAACTGGATCTGGTCGCG
CCCCGGGAGAGTTCGGTTTCGACCCGTTCAACCTCAAGGATAACCCCGAC
AAGAAAGCGCGATACGAGCTGAGCGAGATTCAGCACTGCAGACTGGCCAT
GTTTGCCATCGGTGGCATCGCGACCCAGGCTGTCCTCAACGGCGGAACCT
TCCCCTACGTGGGCAACTAGGAGAGTTCGGTTTCGACCCGTTCAACCTCA
AGGATAACCCCGACAAGAAAGCGCGATACGAGCTGAGCGAGATTCAGCAC
TGCAGACTGGCCATGTTTGCCATCGGTGGCATCGCGACCCAGGCTGTCCT
CAACGGCGGAACCTTCCCCTACGTGGGCAACTAG
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