prot_F-serratus_M_contig1232.1758.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1232.1758.1
Unique Name	prot_F-serratus_M_contig1232.1758.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	239

Homology

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 2.350e-113
Identity = 169/237 (71.31%), Postives = 195/237 (82.28%), Query Frame = 0

Query:    1 MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 237
            MK T+A  A L   A AF  PMP+   AR+ +G+    MANS++IPFMPQPE LDGT+PGD+GFDPLGLS + IDF+E IVPGAAVMREEG    SPVDTLYWMRE+ELKHGR+AQLAVVGWI VDQG+RFPG +Y+AIS SV AHDPMVA+GNMT++LLVV +LE++ G A+FGAA+GSGR PG+FG DP NL  NP KKARYEL+EIQHCRLAM AIGGIATQAVLNGG FPY G
Sbjct:    1 MKTTLASLAALVGGACAFTAPMPMHRAARSPAGAL--SMANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.370e-76
Identity = 131/226 (57.96%), Postives = 162/226 (71.68%), Query Frame = 0

Query:   13 ASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSP--VDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYV 236
            A ASAF    PL G  R+SS  S+SMMA S+SIPF PQP  LDG+LPGDVGFDPLGL+++  D+ + IVP  A MR+     D P  VDTLYWMRE+ELKH R+A LAVVGW+ VD GLR PG KY  +S ++ AHD MV+ GNM +ML   ++LEL++G A+F AA GSGR PG+F  DP  L  +  K ARY+LSE+++ RLAM A  GIATQAVL G +FPY+
Sbjct:   12 AGASAFQAASPLKGAVRSSS--SMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRK----GDEPLVVDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.390e-57
Identity = 102/198 (51.52%), Postives = 132/198 (66.67%), Query Frame = 0

Query:   42 SRSIPFMPQPEKLDGTLPGDVGFDPLGLSALK-IDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKA-RYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 237
            S ++PFMP+P  LDG++PGDVGFDPLG S++  +   ++I P A++   E      P+ TLYWMRE+ELKHGRI  LAV G+  VD G RFPGAKY+ ++ SV AHD MVA+GNM  + L V ++EL+S VA+  AA GSGR PG+F  DP       +K+  R  L+E+ H RLAM A  G+ TQAV  G  FPY G
Sbjct:   36 SAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSE------PLPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADLT-SVTAHDAMVASGNMGFLFLAVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPYQG 226

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.830e-55
Identity = 99/198 (50.00%), Postives = 133/198 (67.17%), Query Frame = 0

Query:   38 MMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 235
            + A S+++PF+  P+ LDG+LP DVGFDPL LS +  DFT ++VP      +E  T    +  L W RE+E+KHGR A LAV+GW+ VD GLR P AKY+  + +V AHD  V +G+MT+ LL +  LE++ G  ++  + GS RA G+F FDP  L  +P K ARY++SEI++ RLAM A GGIATQAVL  G FPY
Sbjct:   31 LAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVP---TKWDESRTG---LSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 177 bits (449), Expect = 3.580e-52
Identity = 101/196 (51.53%), Postives = 128/196 (65.31%), Query Frame = 0

Query:   40 ANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 235
            A S+S+PF+  P  LDGTLPGDVGFDPL  + L  +  EVI+P  ++     AT+  P+  +YWMRE+ELKHGR+  LA+VG++ VD G+ FPGA+Y  +S S+ AHD MVA+GNM  MLL V VLELLS V V  AA GSGR  G+F +DP            +E +EIQH RLAM A  G+ TQ+ L    FPY
Sbjct:   30 AKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSI----SATESLPM--VYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.800e-52
Identity = 115/241 (47.72%), Postives = 139/241 (57.68%), Query Frame = 0

Query:    1 MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSA-LKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPD---KKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVG 237
            M  T+A    + ASASAF+ P  L   A ++SG S+     S+S+PFMPQP KLDGT+ GD GFDPLG S  + +DF                           +RE+ELKHGRI QLAVVG+   D G R PGA+++  S++  AHD  VA G M  +LL V   E +S VAV     GSGR PG+FGFDP NL   P+   KKA  EL EI HCRLAM A GG+ TQAVL    FPY G
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRVASSNSGMSM-QATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDF---------------------------LREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIA--AHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 177 bits (449), Expect = 1.140e-51
Identity = 101/210 (48.10%), Postives = 136/210 (64.76%), Query Frame = 0

Query:   29 RTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNL-KDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNG-GTFPYV 236
            R SSG S  +   S+S+PF+  P  LDG+  GD+GFDPL LS +  DF++++VP     R   AT    + TLYWMRE+E+KHGR+A LAV+G + VD G R PGA ++ +  ++ AHD MVA G M ++LL     E+L G AV+ AA GSGR PG+F  DPF+L K +P +K  ++  EI++ RLAM  I GI TQA L G   FPY+
Sbjct:   30 RISSGPSA-LHLKSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVPRQFSGRPSSAT----LATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.710e-49
Identity = 100/225 (44.44%), Postives = 130/225 (57.78%), Query Frame = 0

Query:   42 SRSIPFMPQPEKLDGTLPGDVGFDPLGLSALK-IDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNL-KDNPDKKARYELSEIQHCR-----------------------------LAMFAIGGIATQAVLNGGTFPY 235
            S+S+PF+   + LDGT+ GD  FDP+G S ++  D++ ++VP       EG      + TLYWMRE+ELKHGRI  LA +GW+  D G RFPG  YS IS ++ AHD MV  GNM  +L V+ V+E+LSG A++ AA GSGRAPG++GFDP  L + N  KKA Y L EI++ R                             LAM    GI TQA L G +FPY
Sbjct:   57 SKSVPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPAWFNKEREG------ISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.550e-45
Identity = 107/230 (46.52%), Postives = 129/230 (56.09%), Query Frame = 0

Query:   11 LAASASAFMNPMPLAGTARTSSG---SSVSMMAN-SRSIPFMPQPEKLDGTLPGDVGFDPLGLSA-LKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 235
            L  SA+AF  P   AG     S    S V+MMA  S SIPFMP+PEKLDGT+PGDVGFDPLG S  + +DF                           +RE+E+KHGRI  LAV GW+ VD GL  PG  ++  SL  +AHD  V  G M+ +LL   + E +S V V     GSGR PG FGFDP N   +   KA+ EL+EI++ RLAM A  GI TQA L G  FPY
Sbjct:   12 LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDF---------------------------LREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSL--EAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211

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BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.400e-45
Identity = 99/225 (44.00%), Postives = 128/225 (56.89%), Query Frame = 0

Query:   11 LAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQPEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDTLYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMVAAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDKKARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPY 235
            LAA A AF  P+       T  G+   M A S +IPF+P+P +LDG+L GDVGFDPLG+S                       D  P+D   ++RESELKHGRI  LAV G+   D G + PG +++  S   DAH+  V+AG MT+M   +  LE +SG+A+  +  GSGRA G++G DP  L D PDK A  ++ EI H RLAM A  G+ TQAVL    FPY
Sbjct:   22 LAAPAVAFQGPVRA-----THRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVS-----------------------DWMPLD---YLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASA--DAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1232.1758.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G3A4_ECTSI	2.350e-113	71.31	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A836CGA6_9STRA	2.370e-76	57.96	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S2RV11_9STRA	2.390e-57	51.52	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
W7UAI7_9STRA	2.830e-55	50.00	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
F0YCE3_AURAN	3.580e-52	51.53	Uncharacterized protein LHC26 n=1 Tax=Aureococcus ...	[more]
D7FWB9_ECTSI	5.800e-52	47.72	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6V1NRI4_HETAK	1.140e-51	48.10	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A6U4L863_9STRA	1.710e-49	44.44	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A836CK85_9STRA	2.550e-45	46.52	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S2S869_9STRA	5.400e-45	44.00	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..226 e-value: 7.5E-36 score: 124.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 43..235 e-value: 8.3E-38 score: 132.0
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 15..235
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 157..177
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 178..238
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..156
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 35..230
None	No IPR available	TMHMM	TMhelix		coord: 214..236
None	No IPR available	TMHMM	TMhelix		coord: 157..179
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 15..235

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1232	contig	F-serratus_M_contig1232:37039..44772 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1232.1758.1	mRNA_F-serratus_M_contig1232.1758.1	Fucus serratus male	mRNA	F-serratus_M_contig1232 36171..44772 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1232.1758.1 ID=prot_F-serratus_M_contig1232.1758.1|Name=mRNA_F-serratus_M_contig1232.1758.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MKATVAYFAPLAASASAFMNPMPLAGTARTSSGSSVSMMANSRSIPFMPQ
PEKLDGTLPGDVGFDPLGLSALKIDFTEVIVPGAAVMREEGATDDSPVDT
LYWMRESELKHGRIAQLAVVGWIFVDQGLRFPGAKYSAISLSVDAHDPMV
AAGNMTIMLLVVIVLELLSGVAVFGAATGSGRAPGEFGFDPFNLKDNPDK
KARYELSEIQHCRLAMFAIGGIATQAVLNGGTFPYVGN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln