mRNA_F-serratus_M_contig1232.1762.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1232.1762.1
Unique Name	mRNA_F-serratus_M_contig1232.1762.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1232.1762.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1232.1762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1232	contig	F-serratus_M_contig1232:212152..215237 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Exons	4
Model size	2232
Cds size	1311
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1232.1762.1	prot_F-serratus_M_contig1232.1762.1	Fucus serratus male	polypeptide	F-serratus_M_contig1232 212308..214472 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929148.0558465-UTR-F-serratus_M_contig1232:212151..212307	1622929148.0558465-UTR-F-serratus_M_contig1232:212151..212307	Fucus serratus male	UTR	F-serratus_M_contig1232 212152..212307 +
1690962725.0467181-UTR-F-serratus_M_contig1232:212151..212307	1690962725.0467181-UTR-F-serratus_M_contig1232:212151..212307	Fucus serratus male	UTR	F-serratus_M_contig1232 212152..212307 +
1622929148.1474466-UTR-F-serratus_M_contig1232:214472..215237	1622929148.1474466-UTR-F-serratus_M_contig1232:214472..215237	Fucus serratus male	UTR	F-serratus_M_contig1232 214473..215237 +
1690962725.104343-UTR-F-serratus_M_contig1232:214472..215237	1690962725.104343-UTR-F-serratus_M_contig1232:214472..215237	Fucus serratus male	UTR	F-serratus_M_contig1232 214473..215237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929148.070845-CDS-F-serratus_M_contig1232:212307..212593	1622929148.070845-CDS-F-serratus_M_contig1232:212307..212593	Fucus serratus male	CDS	F-serratus_M_contig1232 212308..212593 +
1690962725.0602298-CDS-F-serratus_M_contig1232:212307..212593	1690962725.0602298-CDS-F-serratus_M_contig1232:212307..212593	Fucus serratus male	CDS	F-serratus_M_contig1232 212308..212593 +
1622929148.0916007-CDS-F-serratus_M_contig1232:212983..213045	1622929148.0916007-CDS-F-serratus_M_contig1232:212983..213045	Fucus serratus male	CDS	F-serratus_M_contig1232 212984..213045 +
1690962725.0702233-CDS-F-serratus_M_contig1232:212983..213045	1690962725.0702233-CDS-F-serratus_M_contig1232:212983..213045	Fucus serratus male	CDS	F-serratus_M_contig1232 212984..213045 +
1622929148.1082225-CDS-F-serratus_M_contig1232:213241..213313	1622929148.1082225-CDS-F-serratus_M_contig1232:213241..213313	Fucus serratus male	CDS	F-serratus_M_contig1232 213242..213313 +
1690962725.085513-CDS-F-serratus_M_contig1232:213241..213313	1690962725.085513-CDS-F-serratus_M_contig1232:213241..213313	Fucus serratus male	CDS	F-serratus_M_contig1232 213242..213313 +
1622929148.1283638-CDS-F-serratus_M_contig1232:213581..214472	1622929148.1283638-CDS-F-serratus_M_contig1232:213581..214472	Fucus serratus male	CDS	F-serratus_M_contig1232 213582..214472 +
1690962725.0949678-CDS-F-serratus_M_contig1232:213581..214472	1690962725.0949678-CDS-F-serratus_M_contig1232:213581..214472	Fucus serratus male	CDS	F-serratus_M_contig1232 213582..214472 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1232:212152..215237+
coding sequence from alignment at F-serratus_M_contig1232:212152..215237+

protein sequence of mRNA_F-serratus_M_contig1232.1762.1

>prot_F-serratus_M_contig1232.1762.1 ID=prot_F-serratus_M_contig1232.1762.1|Name=mRNA_F-serratus_M_contig1232.1762.1|organism=Fucus serratus male|type=polypeptide|length=437bp
MVMSMASALIVKPAPCGLQRAGIISPNKLPPRRRSSARRGTRSDTAHVAS
DSKKNIRHSCCSSRITNTARNGVDSYTRAFHAGATSSAAAMPATSGTRLD
GGARKTSPRSTSTVPQPNDDNWIETWISAAIRRQREVENEVLEDKDTQPA
VMTTSNVDLSERISYDRGVSDTDHACPPHRVSSARGSTAADNRFRSSSCS
IARPNSATARLGHRSHAPGWLETRVSRRPASAGAGATRLEHIRSKLDHWR
PLQSRRPTSQASKGIDQARRYICGDRDKYSTKACGRQIEPTWSYKGPKRS
EEDLLPRRRILVKVPHVAGELRNTGVPYRLAWNAELAGGEAGDVSDRQCC
DMVGVDSVGTDAAVVFPRCLQEATEIVKLPPPMEWEHEYFGNFGSTDGST
VGSALAQQPPAEDYPRTSHCLQEAREVIKPPRPMGL*

mRNA from alignment at F-serratus_M_contig1232:212152..215237+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1232.1762.1 ID=mRNA_F-serratus_M_contig1232.1762.1|Name=mRNA_F-serratus_M_contig1232.1762.1|organism=Fucus serratus male|type=mRNA|length=3086bp|location=Sequence derived from alignment at F-serratus_M_contig1232:212152..215237+ (Fucus serratus male)
CACCTCGGACCAAACCGCCCGTCGTGGCTCGACATGGACATCGATACAGT
AATAATACTATCCTGTACAATAATAATTGTACTCCACTGAGGTTGCCTTC
GAGTGGAGACGAACCGACGAACCCCATCCGCGTGGCACCGAAATCCTCGT
GATGATATGGTGATGAGCATGGCTTCCGCGTTGATTGTAAAACCGGCTCC
TTGCGGTCTTCAAAGAGCAGGCATCATTTCACCCAACAAATTACCCCCGC
GGCGACGGTCATCAGCTCGACGAGGAACAAGATCCGACACTGCTCATGTT
GCGTCTGACTCGAAGAAGAACATCCGACACTCTTGTTGCTCGAGCAGGAT
CACCAACACCGCCAGGAATGGCGTCGACTCTTACACTCGCGCCTTCCACG
CCGGAGCCACATCGTCGGCAGCAGCGATGCCTGCCACATCCGGTTCGCAG
ACGCACCGTATGAATCTCTTAATCCTTAGGCCAGTTTTTTTTGGTGCGGT
AGCGAAGTCTTGATCATACCCCAACGTTCGAAGGACGCGGCGTAGGACGT
GTTGCATATCTCTAGTTGACAGCCTCGCACTGCCATGGAATCGATTTTCT
AGAGGTAAGCATGTTATTGAATGAAATAAATATATAGTCCAGTATATTAT
GCTGAACCTCTATAATAAGTACGTACCAGGCACGTCTGACAGGAAACGCG
AGGGTCAAGTTGAGCAGCTAAGGAAAAGTAAACAGTGAACTAACTCAACG
CTGGTGCTACACTATAAGATCTATTAATAGGTTATGCTCAACCACTATAT
TTCTGACTGGGTACATTCGCTTCCTATTGCAGGAACGAGACTCGACGGCG
GTGCTCGGAAGACATCGCCGCGCTCGACCTCGACAGTGCCGCAGGTACTC
ATTCGTACATCAGCGGCAGAACATAAAATGGTAATAACCGTGCGGCTTCA
TTAGGAGGCCATTTCAAGGGTTCGTCGCAAAGACTTCGCGACACGCGTCA
TTGACTCAGTGAGTGATTCAATAATTTCATCATTATTTAGAAAGTTATCG
CTCGTCTATTCTCTTCTCGTGGTGCTACTCGTGATTGCAGCCAAACGACG
ACAACTGGATTGAGACCTGGATATCGGCGGCAATTAGGCGTCAGCGCGAG
GTCGAGAACGAGGTACGAGGAGCGGGGTGTTCATTAGAGGGGGTCCGACA
CCAGGGTACGAGGGAAGGTGTTTTCAGTATATACCCACGACGCCGAGAAA
GCTTCATCGCGAGTATTCTGACTATGACTCTTATATATCCCTCCCTCCCC
CCTCGGGGAGAAAACCGAGCATAAAAAGCAGGCGTGCACGTTCTCAACCA
ATCAGATCGCGAAACAAATATATGTTCTTTCTGCGCAAACAGTATACAGC
ATACCTCATTACTTTCGATGTTTCCGTCAGGTGCTGGAGGACAAGGACAC
CCAGCCTGCTGTAATGACAACATCGAATGTGGACCTATCTGAGCGCATTT
CGTATGACAGGGGCGTCAGCGACACAGATCATGCATGTCCCCCCCATCGA
GTGTCTAGCGCCAGAGGATCAACGGCAGCCGACAACAGGTTCAGATCCTC
CTCGTGTTCCATCGCGAGGCCCAACTCTGCGACCGCACGCTTAGGGCACC
GCTCGCATGCGCCAGGCTGGCTTGAAACGCGTGTGTCAAGGAGACCCGCA
TCCGCCGGCGCCGGCGCGACTCGATTAGAGCACATCAGATCGAAGCTGGA
TCACTGGAGGCCACTTCAATCCCGCAGACCAACGAGTCAGGCAAGCAAGG
GCATCGACCAAGCGAGGCGATATATTTGCGGGGACAGGGACAAGTACTCC
ACGAAAGCTTGTGGGCGGCAGATCGAGCCGACTTGGTCATACAAAGGGCC
TAAACGATCAGAGGAGGACCTACTTCCACGTAGGCGCATTTTGGTGAAGG
TGCCTCACGTCGCGGGGGAGCTGAGAAACACTGGCGTCCCCTACAGGCTG
GCCTGGAATGCTGAGCTCGCCGGCGGCGAGGCAGGGGATGTCAGCGACAG
GCAATGCTGCGACATGGTCGGCGTGGATAGTGTCGGAACAGATGCTGCGG
TCGTTTTCCCGCGCTGCCTTCAGGAAGCAACAGAGATTGTCAAACTTCCT
CCCCCGATGGAGTGGGAGCATGAATATTTTGGCAATTTCGGCAGCACTGA
TGGATCGACGGTTGGTTCTGCCCTCGCGCAGCAGCCGCCAGCCGAGGATT
ATCCGCGGACGAGCCACTGCCTTCAGGAAGCAAGAGAGGTTATCAAACCC
CCTCGCCCGATGGGGCTATGATGTATATTTCGGTAGTTTCGGTAGTACTG
ATGGATCGACGGTTGGTTCTGCCCTCGCGCCGCAGCCGCGAGCCGAGGAT
AACCCGCGGACAAGCCGCGTGATCGCCCAGCTACGAGCCTCTGTCTTACG
CGAGCAAAAATCATCTGCGGCCGGGGTCACCGCCTCCCTGTCGACAACGT
CGCGCTTTTTTCAGTCCCCTTCTGACCGCCAAAGCCACCGAGGGGCCGGC
GTACCGTGCTTACCGAACTCGGAGCGTTTGAGCGCTCGGGGAAACCCCAG
GCCCCATTCGGCTCGTGAGGGCACAAGGACGCCATCCGTTTATCACTGGG
ACTCAAGCGCGCGTCCGTCTCGGCTGAGGCAGAGGGTCCCTGGCAGCATT
GGCGGATCATGGGTAAACGAGGCGGGAAGATCTGGGGGACGAGCACGATC
CAAAACAGCGGCGGTCGATCGTGACTGGCTACGCCGCGGGCGGGCATCGG
CGGGGTGCAAATATTCCCTTTTCCCGTCGACCGTGGTAACAGGGAGAGGG
GCCACGAGGGCTTGCGGGAGACGCGGGGTATGGCAACGCCTTCGCTCCAT
TTTCGGTAGGGATCGGCCTCGGGGGCATGAGCGACTGGGAAGGTTCTATT
TGCTCCGCCGATTAGGAGATAACAAGGTTCGGGTCGTGAGTAGTTCCGAC
CGCGACCGTGGGATGATAGAAGCCTCGCCTCGCCACCTCTTTCTTGTTGG
GTTTCCTTTGACTTCTTTGACTCCTTTGACTTCCCG

Coding sequence (CDS) from alignment at F-serratus_M_contig1232:212152..215237+

>mRNA_F-serratus_M_contig1232.1762.1 ID=mRNA_F-serratus_M_contig1232.1762.1|Name=mRNA_F-serratus_M_contig1232.1762.1|organism=Fucus serratus male|type=CDS|length=2622bp|location=Sequence derived from alignment at F-serratus_M_contig1232:212152..215237+ (Fucus serratus male)
ATGGTGATGAGCATGGCTTCCGCGTTGATTGTAAAACCGGCTCCTTGCGG
TCTTCAAAGAGCAGGCATCATTTCACCCAACAAATTACCCCCGCGGCGAC
GGTCATCAGCTCGACGAGGAACAAGATCCGACACTGCTCATGTTGCGTCT
GACTCGAAGAAGAACATCCGACACTCTTGTTGCTCGAGCAGGATCACCAA
CACCGCCAGGAATGGCGTCGACTCTTACACTCGCGCCTTCCACGCCGGAG
CCACATCGTCGGCAGCAGCGATGCCTGCCACATCCGATGGTGATGAGCAT
GGCTTCCGCGTTGATTGTAAAACCGGCTCCTTGCGGTCTTCAAAGAGCAG
GCATCATTTCACCCAACAAATTACCCCCGCGGCGACGGTCATCAGCTCGA
CGAGGAACAAGATCCGACACTGCTCATGTTGCGTCTGACTCGAAGAAGAA
CATCCGACACTCTTGTTGCTCGAGCAGGATCACCAACACCGCCAGGAATG
GCGTCGACTCTTACACTCGCGCCTTCCACGCCGGAGCCACATCGTCGGCA
GCAGCGATGCCTGCCACATCCGGAACGAGACTCGACGGCGGTGCTCGGAA
GACATCGCCGCGCTCGACCTCGACAGTGCCGCAGGAACGAGACTCGACGG
CGGTGCTCGGAAGACATCGCCGCGCTCGACCTCGACAGTGCCGCAGCCAA
ACGACGACAACTGGATTGAGACCTGGATATCGGCGGCAATTAGGCGTCAG
CGCGAGGTCGAGAACGAGCCAAACGACGACAACTGGATTGAGACCTGGAT
ATCGGCGGCAATTAGGCGTCAGCGCGAGGTCGAGAACGAGGTGCTGGAGG
ACAAGGACACCCAGCCTGCTGTAATGACAACATCGAATGTGGACCTATCT
GAGCGCATTTCGTATGACAGGGGCGTCAGCGACACAGATCATGCATGTCC
CCCCCATCGAGTGTCTAGCGCCAGAGGATCAACGGCAGCCGACAACAGGT
TCAGATCCTCCTCGTGTTCCATCGCGAGGCCCAACTCTGCGACCGCACGC
TTAGGGCACCGCTCGCATGCGCCAGGCTGGCTTGAAACGCGTGTGTCAAG
GAGACCCGCATCCGCCGGCGCCGGCGCGACTCGATTAGAGCACATCAGAT
CGAAGCTGGATCACTGGAGGCCACTTCAATCCCGCAGACCAACGAGTCAG
GCAAGCAAGGGCATCGACCAAGCGAGGCGATATATTTGCGGGGACAGGGA
CAAGTACTCCACGAAAGCTTGTGGGCGGCAGATCGAGCCGACTTGGTCAT
ACAAAGGGCCTAAACGATCAGAGGAGGACCTACTTCCACGTAGGCGCATT
TTGGTGAAGGTGCCTCACGTCGCGGGGGAGCTGAGAAACACTGGCGTCCC
CTACAGGCTGGCCTGGAATGCTGAGCTCGCCGGCGGCGAGGCAGGGGATG
TCAGCGACAGGCAATGCTGCGACATGGTCGGCGTGGATAGTGTCGGAACA
GATGCTGCGGTCGTTTTCCCGCGCTGCCTTCAGGAAGCAACAGAGATTGT
CAAACTTCCTCCCCCGATGGAGTGGGAGCATGAATATTTTGGCAATTTCG
GCAGCACTGATGGATCGACGGTTGGTTCTGCCCTCGCGCAGCAGCCGCCA
GCCGAGGATTATCCGCGGACGAGCCACTGCCTTCAGGAAGCAAGAGAGGT
TATCAAACCCCCTCGCCCGATGGGGCTATGAGTGCTGGAGGACAAGGACA
CCCAGCCTGCTGTAATGACAACATCGAATGTGGACCTATCTGAGCGCATT
TCGTATGACAGGGGCGTCAGCGACACAGATCATGCATGTCCCCCCCATCG
AGTGTCTAGCGCCAGAGGATCAACGGCAGCCGACAACAGGTTCAGATCCT
CCTCGTGTTCCATCGCGAGGCCCAACTCTGCGACCGCACGCTTAGGGCAC
CGCTCGCATGCGCCAGGCTGGCTTGAAACGCGTGTGTCAAGGAGACCCGC
ATCCGCCGGCGCCGGCGCGACTCGATTAGAGCACATCAGATCGAAGCTGG
ATCACTGGAGGCCACTTCAATCCCGCAGACCAACGAGTCAGGCAAGCAAG
GGCATCGACCAAGCGAGGCGATATATTTGCGGGGACAGGGACAAGTACTC
CACGAAAGCTTGTGGGCGGCAGATCGAGCCGACTTGGTCATACAAAGGGC
CTAAACGATCAGAGGAGGACCTACTTCCACGTAGGCGCATTTTGGTGAAG
GTGCCTCACGTCGCGGGGGAGCTGAGAAACACTGGCGTCCCCTACAGGCT
GGCCTGGAATGCTGAGCTCGCCGGCGGCGAGGCAGGGGATGTCAGCGACA
GGCAATGCTGCGACATGGTCGGCGTGGATAGTGTCGGAACAGATGCTGCG
GTCGTTTTCCCGCGCTGCCTTCAGGAAGCAACAGAGATTGTCAAACTTCC
TCCCCCGATGGAGTGGGAGCATGAATATTTTGGCAATTTCGGCAGCACTG
ATGGATCGACGGTTGGTTCTGCCCTCGCGCAGCAGCCGCCAGCCGAGGAT
TATCCGCGGACGAGCCACTGCCTTCAGGAAGCAAGAGAGGTTATCAAACC
CCCTCGCCCGATGGGGCTATGA