mRNA_F-serratus_M_contig6591.17562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6591.17562.1
Unique NamemRNA_F-serratus_M_contig6591.17562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6591.17562.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.470e-17
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = -3 
Query:  104 EAVMSHLSLLARFYHGVEATSCQAERKISALALLIGNMRSRMGAFKVERRMFLRLNQRYIPKIAAYNRVIDRQQERRNQCHDKA---QNEGAGD 376
            E  + HL+L+AR +HG+E+TSCQAER  SALA LIG++RS M   KVER MFLRLN+ YIP++ A +  ++  +    +C +K    + E AGD
Sbjct:  408 EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGD 501
[Close]
BLAST of mRNA_F-serratus_M_contig6591.17562.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.950e-17
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = -3 
Query:  104 EAVMSHLSLLARFYHGVEATSCQAERKISALALLIGNMRSRMGAFKVERRMFLRLNQRYIPKIAAYNRVIDRQQERRNQCHDKA---QNEGAGD 376
            E  + HL+L+AR +HG+E+TSCQAER  SALA LIG++RS M   KVER MFLRLN+ YIP++ A +  ++  +    +C +K    + E AGD
Sbjct:  736 EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGD 829
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6591.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.470e-1748.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.950e-1748.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6591contigF-serratus_M_contig6591:13069..13446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6591.17562.1prot_F-serratus_M_contig6591.17562.1Fucus serratus malepolypeptideF-serratus_M_contig6591 13076..13423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932022.049839-UTR-F-serratus_M_contig6591:13068..130751622932022.049839-UTR-F-serratus_M_contig6591:13068..13075Fucus serratus maleUTRF-serratus_M_contig6591 13069..13075 +
1690964106.7113008-UTR-F-serratus_M_contig6591:13068..130751690964106.7113008-UTR-F-serratus_M_contig6591:13068..13075Fucus serratus maleUTRF-serratus_M_contig6591 13069..13075 +
1622932022.081437-UTR-F-serratus_M_contig6591:13423..134461622932022.081437-UTR-F-serratus_M_contig6591:13423..13446Fucus serratus maleUTRF-serratus_M_contig6591 13424..13446 +
1690964106.7325168-UTR-F-serratus_M_contig6591:13423..134461690964106.7325168-UTR-F-serratus_M_contig6591:13423..13446Fucus serratus maleUTRF-serratus_M_contig6591 13424..13446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932022.0651207-CDS-F-serratus_M_contig6591:13075..134231622932022.0651207-CDS-F-serratus_M_contig6591:13075..13423Fucus serratus maleCDSF-serratus_M_contig6591 13076..13423 +
1690964106.7218726-CDS-F-serratus_M_contig6591:13075..134231690964106.7218726-CDS-F-serratus_M_contig6591:13075..13423Fucus serratus maleCDSF-serratus_M_contig6591 13076..13423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6591.17562.1

>prot_F-serratus_M_contig6591.17562.1 ID=prot_F-serratus_M_contig6591.17562.1|Name=mRNA_F-serratus_M_contig6591.17562.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MRYCQPAVPTAQRASSESIPRCHHLLQADLVQIAGSLVLRLVMALISALL
LPVDDPVVRRNLWDIPLVQPQEHPPLHLEGAHSRPHVADEQSESRNFSLG
LAARGLHPVVKASEE*
back to top

mRNA from alignment at F-serratus_M_contig6591:13069..13446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6591.17562.1 ID=mRNA_F-serratus_M_contig6591.17562.1|Name=mRNA_F-serratus_M_contig6591.17562.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig6591:13069..13446+ (Fucus serratus male)
GTGTGGTATGCGCTATTGTCAACCCGCTGTACCAACTGCCCAAAGAGCTT
CGTCCGAAAGTATTCCTCGCTGTCACCATCTTCTACAGGCCGATCTCGTT
CAAATCGCCGGCTCCCTCGTTCTGCGCCTTGTCATGGCACTGATTTCGGC
GCTCCTGCTGCCTGTCGATGACCCTGTTGTACGCCGCAATCTTTGGGATA
TACCTCTGGTTCAGCCTCAAGAACATCCTCCGCTCCACCTTGAAGGCGCC
CATTCTCGACCGCATGTTGCCGATGAGCAGAGCGAGAGCAGAAATTTTTC
GCTCGGCCTGGCAGCTCGTGGCCTCCACCCCGTGGTAAAAGCGAGCGAGG
AGTGAGAGATGCGACATAACCGCTTCCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6591:13069..13446+

>mRNA_F-serratus_M_contig6591.17562.1 ID=mRNA_F-serratus_M_contig6591.17562.1|Name=mRNA_F-serratus_M_contig6591.17562.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig6591:13069..13446+ (Fucus serratus male)
ATGCGCTATTGTCAACCCGCTGTACCAACTGCCCAAAGAGCTTCGTCCGA
AAGTATTCCTCGCTGTCACCATCTTCTACAGGCCGATCTCGTTCAAATCG
CCGGCTCCCTCGTTCTGCGCCTTGTCATGGCACTGATTTCGGCGCTCCTG
CTGCCTGTCGATGACCCTGTTGTACGCCGCAATCTTTGGGATATACCTCT
GGTTCAGCCTCAAGAACATCCTCCGCTCCACCTTGAAGGCGCCCATTCTC
GACCGCATGTTGCCGATGAGCAGAGCGAGAGCAGAAATTTTTCGCTCGGC
CTGGCAGCTCGTGGCCTCCACCCCGTGGTAAAAGCGAGCGAGGAGTGAAT
GCGCTATTGTCAACCCGCTGTACCAACTGCCCAAAGAGCTTCGTCCGAAA
GTATTCCTCGCTGTCACCATCTTCTACAGGCCGATCTCGTTCAAATCGCC
GGCTCCCTCGTTCTGCGCCTTGTCATGGCACTGATTTCGGCGCTCCTGCT
GCCTGTCGATGACCCTGTTGTACGCCGCAATCTTTGGGATATACCTCTGG
TTCAGCCTCAAGAACATCCTCCGCTCCACCTTGAAGGCGCCCATTCTCGA
CCGCATGTTGCCGATGAGCAGAGCGAGAGCAGAAATTTTTCGCTCGGCCT
GGCAGCTCGTGGCCTCCACCCCGTGGTAAAAGCGAGCGAGGAGTGA
back to top