mRNA_F-serratus_M_contig659.17556.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig659.17556.1
Unique NamemRNA_F-serratus_M_contig659.17556.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: D7FUC1_ECTSI (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUC1_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 1.090e-83
Identity = 148/246 (60.16%), Postives = 168/246 (68.29%), Query Frame = 1
Query:  256 DQEVSDWPLPAWLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLRXXXXXXXXH-------------------KRDELHAEDKARCSSSHNLLEHGPSE----GVVEEAAVSPHRPSRPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTHDSLPT 924
            D+ VSD PLPAW+EGDSLAPPCQADM+VVRAIIDFAGVT  DVL+DLGCGDGRICIEAAE RGA+AC GVEIEE L +KFRR V+ KGL SKVSV+HGDLR+VDLS+ATVVVMYLLPDA+A+IAQ  LLPLLR                            +R+ L +E      +       G  E    G             +PCRIVCNTWG+PGATAVREA VGL+GGV LRLFTH SLP+
Sbjct:   22 DEGVSDNPLPAWMEGDSLAPPCQADMDVVRAIIDFAGVTADDVLYDLGCGDGRICIEAAESRGAKAC-GVEIEEDLAEKFRRRVAAKGLNSKVSVVHGDLRDVDLSDATVVVMYLLPDAMADIAQSHLLPLLRRGHGTPATTXXXXXXXXXXXGDSETQRVERETLESEGAPGADNQAVSTRGGEEERRLNGGCGNDGGGVGGGMKPCRIVCNTWGVPGATAVREAGVGLHGGVKLRLFTHASLPS 266          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A835Z0V4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.460e-45
Identity = 80/134 (59.70%), Postives = 101/134 (75.37%), Query Frame = 1
Query:  253 SDQEVSDWPLPAWLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLR 654
            +D    D PLP WLEGDSLAPPCQA  +VV+A+++FAGVT +D+++DLGCGDGR C EAAE  GAR+C G+EIEE LV  FR  V  KGL  +V V+HGDL E DLS+AT++VMYLLP+A+A +   L+  L R
Sbjct:    2 ADDSDEDNPLPRWLEGDSLAPPCQAGYDVVQALLEFAGVTAKDIVYDLGCGDGRFCTEAAEKFGARSC-GIEIEEDLVQSFRAAVEAKGLQQRVRVVHGDLLEQDLSDATIIVMYLLPEALALLEPKLIRELSR 134          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A067CEZ1_SAPPC (Methyltransf_25 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEZ1_SAPPC)

HSP 1 Score: 156 bits (395), Expect = 1.160e-43
Identity = 93/209 (44.50%), Postives = 114/209 (54.55%), Query Frame = 1
Query:  289 WLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLRXXXXXXXXHKRDELHAEDKARCSSSHNLLEHGPSEGVVEEAAVSPHRPSRPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTHDS 915
            WLEGDSLAPPCQ+D ++V+AIIDFA V   DV+FDLGCGDGRICI AA   G RA  G+EIE PL+ KF ++++   L  KV ++H DL + DLSEATV+V YLLP+A+  +A  L                                             EAA++     R CRIV NTWGIPG T      VG Y  V L L+T  S
Sbjct:   20 WLEGDSLAPPCQSDYDIVQAIIDFANVQPTDVVFDLGCGDGRICIGAARQHGCRA-VGIEIEAPLIAKFEQSIAKYKLQDKVRMLHADLMDADLSEATVIVTYLLPEALTLLAPKL---------------------------------------------EAALT-----RGCRIVSNTWGIPGMTPAARVDVGQYANVPLYLYTLQS 177          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A6G0X2H8_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2H8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.790e-40
Identity = 93/226 (41.15%), Postives = 117/226 (51.77%), Query Frame = 1
Query:  232 LEAEEDGSDQEVSDWPLPAWLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLRXXXXXXXXHKRDELHAEDKARCSSSHNLLEHGPSEGVVEEAAVSPHRPSRPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTH 909
            ++  ++ SD++  +     WLEGDSLAPPCQ+D +VV  II  A VT  DV+FDLGCGDGRICI AA   GA A  GVEIEEPL+ KF+  +    L  KV V+HGDL E DL+ ATV+V YLLP+A+  + + L                                        +  VE          R CRIV NTW IPG T   +  VG +  V L L+TH
Sbjct:    1 MDRRQEWSDEDEEEESTFMWLEGDSLAPPCQSDYDVVHEIIRLAKVTSDDVVFDLGCGDGRICIAAARQHGASA-VGVEIEEPLITKFKERIGRYKLEDKVQVVHGDLMETDLTRATVIVTYLLPEALTLLDEKL----------------------------------------KACVE----------RGCRIVSNTWHIPGWTHDIKVDVGPFNNVPLYLYTH 175          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A1W0A447_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A447_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.260e-40
Identity = 87/207 (42.03%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  289 WLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLRXXXXXXXXHKRDELHAEDKARCSSSHNLLEHGPSEGVVEEAAVSPHRPSRPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTH 909
            WLEGDSLAPPCQ+D E+V++I+DFA VT  DV++DLGCGDGRICI AA   G RA  G+EIEE L+ KF++++    L  KV  +H DL E DLS ATV+V YLLP+A+  +++ L                                        E  +E+           CRIV NTWGIPG T      VG Y  V L L++ 
Sbjct:   23 WLEGDSLAPPCQSDYEIVQSIVDFAKVTPSDVVYDLGCGDGRICIGAARRYGCRA-VGIEIEEHLIAKFQQSIVKYNLQDKVRFVHADLMEADLSAATVIVTYLLPEALTLLSKKL----------------------------------------EKAIEQG----------CRIVSNTWGIPGMTPKARIDVGQYQNVPLYLYSQ 178          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A1V9YP44_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP44_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.610e-39
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  289 WLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLR 654
            WLEGDSLAPPCQ+D ++V+AI+DFAGV   DV+FDLGCGDGRICI AA   G RA  G+EIE PL+ KF ++++  GL   VSV+H DL E DLS ATV+V YLLP+A+  +A  L   L R
Sbjct:   24 WLEGDSLAPPCQSDYDIVQAIVDFAGVQPTDVVFDLGCGDGRICIGAARQHGCRA-VGIEIEAPLIAKFEQSIAKYGLADLVSVLHADLMEADLSSATVIVTYLLPEALTLLAPKLEAALAR 144          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: M4BRJ3_HYAAE (Methyltranfer_dom domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRJ3_HYAAE)

HSP 1 Score: 143 bits (360), Expect = 2.400e-38
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 1
Query:  253 SDQEVSDWPLPAWLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLL 639
            SD E +D     W+EGDSLAPPCQ+D +VV  I++ A +T  DVLFDLGCGDGRICIEAA+  GARA  GVEIEE L+++FRR V+ K L   VSV HGDL E DLS+ATV+V YLLP+A+ +++  L+
Sbjct:    6 SDDEEADPGAFMWIEGDSLAPPCQSDRDVVAKIVEIACLTCDDVLFDLGCGDGRICIEAAKRFGARA-RGVEIEEFLIERFRRLVAVKDLQQLVSVSHGDLLEEDLSDATVIVTYLLPEALEQLSAKLI 133          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A662WR70_9STRA (Methyltranfer_dom domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR70_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.990e-37
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  289 WLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEI 624
            W+EGDSLAPPCQ+D +VV  I+  A VT  DVL DLGCGDGRICIEAA+  GARA  GVEIEE L+++FR+ ++  GL   VSV HGDLRE DLS+ATV+V YLLP+A+ E+
Sbjct:   31 WMEGDSLAPPCQSDRDVVSKIVAIANVTPDDVLIDLGCGDGRICIEAAKRFGARA-RGVEIEEFLIERFRQLIAADGLQELVSVSHGDLREEDLSDATVIVTYLLPEALDEL 141          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A485LFZ9_9STRA (Aste57867_19079 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFZ9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.160e-37
Identity = 89/212 (41.98%), Postives = 112/212 (52.83%), Query Frame = 1
Query:  289 WLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLLRXXXXXXXXHKRDELHAEDKARCSSSHNLLEHGPSEGVVEEAAVSPHRPSRPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTHDSLPT 924
            WLEGDSLAPPCQ++ +VV  I+ FA VT  DV+FDLGCGDGRICI AA   GA A  GVEIE+ L+ KF++ ++   L  +V V HGDL E DLS ATV+V YLLP+A+  +                     D+L A            L+ G                   CRIV N+W IPG  A  +  VG +  V L L+ +D L T
Sbjct:   20 WLEGDSLAPPCQSEYDVVYDILRFAKVTSSDVVFDLGCGDGRICIAAARKFGASA-VGVEIEDHLIQKFQQKITRYALEDRVHVRHGDLMETDLSRATVIVTYLLPEALVMLT--------------------DKLKA-----------CLDRG-------------------CRIVSNSWHIPGMDAQAKINVGPFNNVPLFLYVNDPLDT 180          
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Match: A0A329RTV9_9STRA (Methyltranfer_dom domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329RTV9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.510e-37
Identity = 75/127 (59.06%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  244 EDGSDQEVSDWPLPAWLEGDSLAPPCQADMEVVRAIIDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRRTVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEI 624
            ++ SD+E  +     W+EGDSLAPPCQ+D +VV  I++ A VT  DVLFDLGCGDGRICIEAA+  GARA  GVEIEE L+ +FR  ++   L   VSV HGDL E DLSEATV+V YLLPDA+ ++
Sbjct:   10 DEESDEEEQNPGAFMWIEGDSLAPPCQSDRDVVSKIVEIARVTPADVLFDLGCGDGRICIEAAKRYGARA-RGVEIEEFLIKRFRELIAANDLQQLVSVSHGDLLEEDLSEATVIVTYLLPDALDQL 135          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig659.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUC1_ECTSI1.090e-8360.16Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A835Z0V4_9STRA9.460e-4559.70S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A067CEZ1_SAPPC1.160e-4344.50Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A6G0X2H8_9STRA1.790e-4041.15Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1W0A447_9STRA3.260e-4042.03Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1V9YP44_9STRA7.610e-3959.84Methyltransf_25 domain-containing protein n=1 Tax=... [more]
M4BRJ3_HYAAE2.400e-3859.69Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A662WR70_9STRA1.990e-3764.29Methyltranfer_dom domain-containing protein n=1 Ta... [more]
A0A485LFZ9_9STRA7.160e-3741.98Aste57867_19079 protein n=1 Tax=Aphanomyces stella... [more]
A0A329RTV9_9STRA9.510e-3759.06Methyltranfer_dom domain-containing protein n=10 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig659contigF-serratus_M_contig659:215340..221172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue9.9e-68
Seed eggNOG ortholog2880.D7FUC1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2RY3R@2759,COG0500@1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-03_000800.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size924
Cds size723
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932021.4464264-CDS-F-serratus_M_contig659:215339..2157321622932021.4464264-CDS-F-serratus_M_contig659:215339..215732Fucus serratus maleCDSF-serratus_M_contig659 215340..215732 -
1690964106.3726072-CDS-F-serratus_M_contig659:215339..2157321690964106.3726072-CDS-F-serratus_M_contig659:215339..215732Fucus serratus maleCDSF-serratus_M_contig659 215340..215732 -
1622932021.4653115-CDS-F-serratus_M_contig659:216145..2162191622932021.4653115-CDS-F-serratus_M_contig659:216145..216219Fucus serratus maleCDSF-serratus_M_contig659 216146..216219 -
1690964106.3903186-CDS-F-serratus_M_contig659:216145..2162191690964106.3903186-CDS-F-serratus_M_contig659:216145..216219Fucus serratus maleCDSF-serratus_M_contig659 216146..216219 -
1622932021.4798708-CDS-F-serratus_M_contig659:216959..2170351622932021.4798708-CDS-F-serratus_M_contig659:216959..217035Fucus serratus maleCDSF-serratus_M_contig659 216960..217035 -
1690964106.4027479-CDS-F-serratus_M_contig659:216959..2170351690964106.4027479-CDS-F-serratus_M_contig659:216959..217035Fucus serratus maleCDSF-serratus_M_contig659 216960..217035 -
1622932021.492983-CDS-F-serratus_M_contig659:217776..2178331622932021.492983-CDS-F-serratus_M_contig659:217776..217833Fucus serratus maleCDSF-serratus_M_contig659 217777..217833 -
1690964106.4116552-CDS-F-serratus_M_contig659:217776..2178331690964106.4116552-CDS-F-serratus_M_contig659:217776..217833Fucus serratus maleCDSF-serratus_M_contig659 217777..217833 -
1622932021.5101364-CDS-F-serratus_M_contig659:218062..2181851622932021.5101364-CDS-F-serratus_M_contig659:218062..218185Fucus serratus maleCDSF-serratus_M_contig659 218063..218185 -
1690964106.4208987-CDS-F-serratus_M_contig659:218062..2181851690964106.4208987-CDS-F-serratus_M_contig659:218062..218185Fucus serratus maleCDSF-serratus_M_contig659 218063..218185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932021.5258055-UTR-F-serratus_M_contig659:218185..2181951622932021.5258055-UTR-F-serratus_M_contig659:218185..218195Fucus serratus maleUTRF-serratus_M_contig659 218186..218195 -
1690964106.4311152-UTR-F-serratus_M_contig659:218185..2181951690964106.4311152-UTR-F-serratus_M_contig659:218185..218195Fucus serratus maleUTRF-serratus_M_contig659 218186..218195 -
1622932021.539286-UTR-F-serratus_M_contig659:220981..2211721622932021.539286-UTR-F-serratus_M_contig659:220981..221172Fucus serratus maleUTRF-serratus_M_contig659 220982..221172 -
1690964106.4416597-UTR-F-serratus_M_contig659:220981..2211721690964106.4416597-UTR-F-serratus_M_contig659:220981..221172Fucus serratus maleUTRF-serratus_M_contig659 220982..221172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig659.17556.1prot_F-serratus_M_contig659.17556.1Fucus serratus malepolypeptideF-serratus_M_contig659 215340..218185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig659.17556.1

>prot_F-serratus_M_contig659.17556.1 ID=prot_F-serratus_M_contig659.17556.1|Name=mRNA_F-serratus_M_contig659.17556.1|organism=Fucus serratus male|type=polypeptide|length=241bp
MSSQNLQLCNLEAEEDGSDQEVSDWPLPAWLEGDSLAPPCQADMEVVRAI
IDFAGVTDQDVLFDLGCGDGRICIEAAEGRGARACAGVEIEEPLVDKFRR
TVSTKGLGSKVSVIHGDLREVDLSEATVVVMYLLPDAIAEIAQPLLLPLL
RRGGGGGGGHKRDELHAEDKARCSSSHNLLEHGPSEGVVEEAAVSPHRPS
RPCRIVCNTWGIPGATAVREAAVGLYGGVVLRLFTHDSLPT
back to top

mRNA from alignment at F-serratus_M_contig659:215340..221172-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig659.17556.1 ID=mRNA_F-serratus_M_contig659.17556.1|Name=mRNA_F-serratus_M_contig659.17556.1|organism=Fucus serratus male|type=mRNA|length=5833bp|location=Sequence derived from alignment at F-serratus_M_contig659:215340..221172- (Fucus serratus male)
ACTCAGCAGACCACGAGCGGGATTGACAACAACTAGCAGGTGTCCTCTTT TGGAGGCCGACTTTCGCTGCGCGACACGAGCGGCGCGCTCTTCGTGGGCG AGTCCAATTTTGAATCCAGGCCACAGTTCATCTGAGTGAGGTTCACTTCT CAGCGACTTGTTGCCTATTTACTTCAGCTGCCTCGCCGAAGGTACGAAAT CCCCAGGCTCGACGAAAAAAATCGCATGCTCTAGACTATCTACAATAGAC TATACTCCCGATCCGAACCACCCGGGATAGTACCAGTACTCGACGAGACT GTCAAGCTTGAATTTGTTGAGATTTTTGTCCCGTTTCTAACTGGCCTGGA CCTCGTGCTCACGCATTCGTTGATTTCGGTTTACCAACAGTACCTGTACA CTGGTTCGTTGAACAGGGGATCAAATGCCTGAGGCTGCGACCGGTTCTAG TCCGCAACCTTGTATTGTCAAATCCACGCACAGAACGAAGGTCGGTTATA CTGTCTTTGTAGTACGACGCACAGCCAATGCACTAAATATATATGTTCAC GCCGATACTTTGAACATGCCCACTTCATACCATTAGTGGGTGTGGGAAAG AGAGGCGCACCCGTTACTGGAACTACCTTGAGGTTTACTGGCCCTGTGCC GGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCTGAT TAACTCGGGACTGACCCTATGGCGTATGGCGGTTTAAATAAATAAATGGA TGCCGCTGCGGAAATCGGGAGGAATCCCCGTATATAGTCACACCAGATTC ATTTTCCCTGTCCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTT GATCCTTACTCTGATGTATCTGATGACCAAACATGTATGTGATACATATG TATCTATGGCCAACATATTCAGCGGAGTATGGATCAACCTGATGTGGGTG CCAATTCCTGCGCGTGGCCGACTGTAAAGTGAAAATGTTTTTACCTGTCC CCTTTCGCGCCTGAGAATTTAGTCTCGCGAGACGGGTTCGGCCGTCCCGT CCCCCGTCAGCCGCTCATTCTCCATACCCAGGCTGAATCTAGTACTGCGT ATTATATGCTCCGTTGTAAGATGTCCTGCTGCCTGTGAGCTCCAGGCTCA CAGCCTCACCAGTAGTGCTTGTACAGTAGAAGGTAGCTATCGACCGCACC CTTCTGTGGCAGGTACTTACTCGCATCGGAGTACCACCGCAGATGATAGC AGCCATTCGATAATTCCACGATGGGATGAGAGCTCGTGTGCGACCTGATG TCGACGTCTGCTCGGAGTGGTTGGAGGTGGAGCAAGGACTACGACAAGGA TGCGTCCTTTCCCCGCTGTTTGTTGTTCAATATCTTCGCTGCCGTGCTGA CCGTCGTCCTGTGGTGCATCGGAAGAAACCGCCGACGTCGATGGTGACCG GAGCCGGCTGTGGACTGCGTTCGTCGTGCGGGGTGGGGAATGAATGCTAT ACGCGGATGATGACGTCTGCATAGCGTTGAGGTCTCCGCGAGGTCTCGCG AAGATGATCGTGGAGCTTTGACGAGGCCTTCGCCCTAAGCGTGCCTGAGA CGAAGACAGAGACCATGTGTATGCCTCCACCGCGTACACCGCGGACGATG GTGCGAGCCGAAGCGACCGGGCAAACCTACAAACAGGTGCAACCCTTCAC CTACGTGTAGGGTGCCGTTATCGAAACCCCGGGCATGTCCGCTGAAATCG CCAAGCGGACTCGCGGATGCTGGGTGCGCATCAGGTGGTACCTACGTCAG CTCTACGACCTGCCGAAAGCGGCGCTCTCCCTCAAGGCTCGAAAGGTTAA GGCCGAAGCAACCGGCGCCCTCATGTATGAATGCAGTACGTGGACCCTTC GCCAGGAACACTGTTGTACTCCAAACTCCGCTCCCTAGTGTACTAGTGTT CACCACCGGGTCTTGTCTTGCTTCGCATCATCGGGGCGCAGCGCAAGAAA CCAGACCATCGGATGACTTCTGACAACCGTGCCCTCGAGGCACAAACGTG CGCACGAGAAGACTTCTGTGGGCGGGGGGGGCGCTTATCCGAATGGGTGG CGGGTGGTTGCCAAAGCGAGTCGTGTTCGAAAACCTTGAGGGCGTAGTGC GGAGAGGACGAGGTGGGGAGGAGAAAGAGTGGATCGATTGCGCACAGAGC GACGTCCGGGCGTTTGGCGCAGCGGGGAACTGGAAAGCGACGGCGTTGGA GGCAGGGGTGTGGGTTGAGACGGCCACGGAAGGCGGGCGGAGGTTTATGG CCGCGTGGGAAAAATATGAAGACATGGCTAGACATCGCCAGGGGAGCAGA GAGGCAAACAAGGCTAGAAAACTTGTTACCGTACACCGAAGCGTAGATTG GCCTAGTTGACGAGGCGAAGGAATCGTGCACGAACACGAGACAGACCGAG ACCTGCGTAGCGCCCAAGCACGTGGATGCATCACGTGCCCCTCTTGACCA TCTGTTCTTTTTGTTGTGCGCGCCTTGAGTTTCGTTTTGTTTTTCCCCTC CGTACAAGAAACGGCACTCTCGTAGACTGAAGACGGAGTTTTGTTTTGTT TTTGGAGGGGGGGGGAGGGAAGGTGTGCTGCCAGACTTTATATTTTTGTT CTCTTTTTCCTGTTCAGCAGACCGCGAGCAGGATTGGCCACCGTGTCAAG TAGTTTTTATCTCGGGTTGGCAACTATTGATAATGATTACGCTAAATCGG AGAAGACAACACCAGCATCAAGAAGCTGCATCGGAATCACCCTGCAATAC TCCGTTCCCCCGATTTACGGAGGGTCGCCCCCAGTTGGGTGGAGGTTGTT CTTGGTGCTCGTGTGTAAAAGTAGTGTAGTGCCAGTAACGTCAAGTGCAG GAGAAATCATGTTCCAATCCAGTCATGTCTTGTTCAATGTAAGCGTCCTG TCCATATTCCTCTTGACACTGTGCCAGGTGTTGGGCCATGTCGAGTCAAA ACTTACAGCTATGTAATCTGGAGGCAGAGGAGGACGGCAGCGATCAGGAG GTCAGCGACTGGCCTTTACCGGCCTGGCTGGAGGGCGACTCGCTCGCGCC TCCCTGTCAGGTGAACCGCTTGCCCTCCTAACAGGGAGGGGACGTTGTGG TTCTTGGTTTCATGGCGCGCTCTCACCAACTACATGAAACGATCTACTAC ACATTTTTGTGCAATGTTCCCGACCCCGACTTTTGACGCGTGCTTGCAGC ATGACGAACCCTCACGGACGGGTGGAATCACTACCAACACTGTTTGTATC GTTCGGCCTCCTTGCCATGTGCTGCGGGGCGGACAACAGGCGGATATGGA GGTCGTACGGGCCATAATCGACTTCGCGGGCGTGACCGACCAAGACGTGA GAGGCAGTTAGTTGTACAACTATCAATACATAGTGTACCGTAATAACTGT ATTATAGTCTGTCGACGGGAGTGTAAGCCAGTCAGCAGGTGTTTTCCGTA GCTTGGCTGTCCTGAATTGGAGACGCCAATAATTGGTCGGATTTCCTTGG CTCTGGCTTGCTTTCGAAGCGGAAAGTGTGAAACGAAGCACTTAAAAAAC AAAATGAAAAAAACAATTACATTTTCACCTCTCTATATACTATTCTATAT GGTATTTATTACCGGTATTAGTAGTCGGCTGTGACAACTTGTTGGGAAGT CTTAATTAACCCCGTTGTTTATAGAAAAACTAAAACGCGCCTAGACCTTA TGAGCATCCCCGTTGTGTTGTGAAAGAAAAGTACCCCGCCGAGAGGAGTT TGTACAGTAAAGTACTCTGTATAGATAGATGTAGATAAATCAAGTGTGCC GCCACAGCCGAGAAGGGCGATGTTGTACTGTTATAGACGCCCCTGGCATG TTGAATATCGCCCCCCCCCCAATAAACGAACAACAGCCTCCTTGTTATTG AACATGCGTAACAAATGCACCGATCGAGCACCGGAAAATTCCACCTGCCA TTACCTTGTAGTTCGTTTCGTTTAGACAAAAAACAAAACAAAAAACTAAG CGGTTGGCATCGTGCCGAGGTCTAGGTTCGACGCGTCGCTGACGCATACA AGCTGTTCTGTGCCTCCGGGACTCATCGCTTGAGCAGGTGTTATTCGATC TCGGGTGCGGGGATGGACGTATTTGCATCGAAGCCGCCGAGGGCCGCGGA GCTAGGGCGTGCGGTAAGAGGTTTGTGTCATCGAAAAATATCTGCACCCA GCTGGAGCTCGCGCTTGAGGGCGTCCAGCTACCACCCGCAGTTCGAGAGC CCGATTCAGTTTCAATTTGTAACCGACGACGGGGAGGGTTTCATACTGTT GAATACGACAGGCGTGTTTTCGTATCGTAACGCCTCTCCCTCCCTTGGGT TACCCAAAAGAGAGAGAGATGCATGCATGAGGTGTGTTTTGTCAAATTAA TTAGTAGTGGCACCCAGGCGTCGGCCAAATAGCGTTTGCGCACTCCAGCC GTGGCGATCGTTCTCGGCGACCATGTCTGTATGTATGCATGGTCATAGTC CTCATCACATCACATATAGCAAGGGTAATGATCAACCGAATAAGGTTGCC AATCCTGCTGTACTCGTTGGCAGCTGAACAAGGAAAATGAATTTCTCCAT GTCCCCGTGCGTGCCTGGGAATTTGGTCTCGCGAGACGGATTCGGCAGTC CCGTCCCGAGCCAGCCTGTTCATCTCCATACTCAGGCTGAATCTGGTGCT TACGGAGATTCCTCCCGAGTTCCGCGGCGGAGTCCATTGCATTATGTGTT TTGATGAAGCGTTTCTTTTTACTTGGCAGCTCGGACGGCAGTTAAGTGTC TACCGCGCGCCGCTTGCGTGTTTGCCTTTCAAGGCTCCCCCGTCTGTTAC TGCGCTCGTGATTCTCTTCCGCACTCATTGTCGGACTTTTGGATTCTGGC CAGCAGGTGTGGAGATCGAGGAACCTCTGGTTGACAAGTTCCGACGAACA GTATCTACGAAGGGACTAGGGTCAAAGGTATCTCCGTAGATACTGTTCAT CGTGCCAACACCGGGAGATATCCATCGTCGACATCTACAGATGAACATGT GTACCGCACCTGAATTAAAATGATCGGTGTTTTGTTTGCTAGTCTATGCT GCTGGCTACAGCAGGCAGCATAAGCACATGGATATATTAGTAGTTTCCGG CGAGACTCTTTAACGATGTATATATGATCCTTTCGCTTCCTAACCCTAAT ATCGTTAAATGGGCGCCGACGGGGAAAACAAGCTCCTTGGTCCCTCTTAT TATTCACCTATATACTTGACCGCAACGCATTTTCTAGGAGGGTGTCGCTT CAGTAAAGAGCACGGAACCTTGTAAAGGCCTCCGCTCCAGCGCCCCCCCC CCCCCAACCTTCCCGTTGGATGATGTGCGCGCCTGGACAGGTATCGGTGA TACACGGCGACCTTCGAGAGGTGGACCTCTCCGAGGCTACCGTCGTGGTG ATGTACCTGCTGCCCGACGCCATTGCCGAGATCGCGCAGCCTCTCCTGCT GCCCCTCCTCCGACGAGGCGGCGGCGGCGGGGGCGGGCACAAGCGGGACG AACTCCACGCAGAGGACAAAGCACGGTGCAGCTCCTCGCACAACCTACTA GAACATGGGCCAAGCGAAGGAGTTGTAGAAGAAGCGGCGGTCTCACCACA CAGACCCAGCAGGCCGTGCAGAATCGTGTGCAACACTTGGGGCATTCCCG GAGCTACCGCGGTGCGAGAAGCCGCCGTGGGTCTGTACGGAGGGGTGGTT CTCCGGCTCTTCACGCACGATTCGCTCCCGACG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig659:215340..221172-

>mRNA_F-serratus_M_contig659.17556.1 ID=mRNA_F-serratus_M_contig659.17556.1|Name=mRNA_F-serratus_M_contig659.17556.1|organism=Fucus serratus male|type=CDS|length=1446bp|location=Sequence derived from alignment at F-serratus_M_contig659:215340..221172- (Fucus serratus male)
ATGTCGAGTCAAAACTTACAGCTATGTAATCTGGAGGCAGAGGAGGACGG
CAGCGATCAGGAGGTCAGCGACTGGCCTTTACCGGCCTGGCTGGAGGGCG
ACTCGCTCGCGCCTCCCTGTCAGATGTCGAGTCAAAACTTACAGCTATGT
AATCTGGAGGCAGAGGAGGACGGCAGCGATCAGGAGGTCAGCGACTGGCC
TTTACCGGCCTGGCTGGAGGGCGACTCGCTCGCGCCTCCCTGTCAGGCGG
ATATGGAGGTCGTACGGGCCATAATCGACTTCGCGGGCGTGACCGACCAA
GACGCGGATATGGAGGTCGTACGGGCCATAATCGACTTCGCGGGCGTGAC
CGACCAAGACGTGTTATTCGATCTCGGGTGCGGGGATGGACGTATTTGCA
TCGAAGCCGCCGAGGGCCGCGGAGCTAGGGCGTGCGGTGTTATTCGATCT
CGGGTGCGGGGATGGACGTATTTGCATCGAAGCCGCCGAGGGCCGCGGAG
CTAGGGCGTGCGCAGGTGTGGAGATCGAGGAACCTCTGGTTGACAAGTTC
CGACGAACAGTATCTACGAAGGGACTAGGGTCAAAGCAGGTGTGGAGATC
GAGGAACCTCTGGTTGACAAGTTCCGACGAACAGTATCTACGAAGGGACT
AGGGTCAAAGGTATCGGTGATACACGGCGACCTTCGAGAGGTGGACCTCT
CCGAGGCTACCGTCGTGGTGATGTACCTGCTGCCCGACGCCATTGCCGAG
ATCGCGCAGCCTCTCCTGCTGCCCCTCCTCCGACGAGGCGGCGGCGGCGG
GGGCGGGCACAAGCGGGACGAACTCCACGCAGAGGACAAAGCACGGTGCA
GCTCCTCGCACAACCTACTAGAACATGGGCCAAGCGAAGGAGTTGTAGAA
GAAGCGGCGGTCTCACCACACAGACCCAGCAGGCCGTGCAGAATCGTGTG
CAACACTTGGGGCATTCCCGGAGCTACCGCGGTGCGAGAAGCCGCCGTGG
GTCTGTACGGAGGGGTGGTTCTCCGGCTCTTCACGCACGATTCGCTCCCG
ACGGTATCGGTGATACACGGCGACCTTCGAGAGGTGGACCTCTCCGAGGC
TACCGTCGTGGTGATGTACCTGCTGCCCGACGCCATTGCCGAGATCGCGC
AGCCTCTCCTGCTGCCCCTCCTCCGACGAGGCGGCGGCGGCGGGGGCGGG
CACAAGCGGGACGAACTCCACGCAGAGGACAAAGCACGGTGCAGCTCCTC
GCACAACCTACTAGAACATGGGCCAAGCGAAGGAGTTGTAGAAGAAGCGG
CGGTCTCACCACACAGACCCAGCAGGCCGTGCAGAATCGTGTGCAACACT
TGGGGCATTCCCGGAGCTACCGCGGTGCGAGAAGCCGCCGTGGGTCTGTA
CGGAGGGGTGGTTCTCCGGCTCTTCACGCACGATTCGCTCCCGACG
back to top