mRNA_F-serratus_M_contig659.17553.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: D7FUE3_ECTSI (UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE3_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.290e-59 Identity = 108/179 (60.34%), Postives = 127/179 (70.95%), Query Frame = 3
Query: 276 RLA-RGLGFAPGVRVGEGFNLFLYDRGLSASTTAHQSQPSPTRWHRATSFHIARED-------ARSMVLRPDWEREGRVFGLRMPPRKEGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
RLA R GF+P G + R +A + ++P+ + S AR AR MVLRPDWEREGRV+GLRMP + RAFEYLV YPCEFEIKVIG+NEG+FADDIAATVSA C+V+ SDVRFTVR T+SG+YQSITVHAPV+NA MLY+CYE+IDEDPRVKFKF
Sbjct: 4 RLATRSFGFSPAS--SGGIAAQVSSRRAAARSHGRHTRPTAAAFTSGPSAAAARPTGSRPPTTARKMVLRPDWEREGRVYGLRMPRERTAERAFEYLVDYPCEFEIKVIGINEGSFADDIAATVSAVCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A836CJU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU5_9STRA) HSP 1 Score: 129 bits (323), Expect = 3.570e-32 Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 3
Query: 441 ARSMVLRPDWEREGRVFGLRMPPRKEGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
A SM+LR D +REGR G RAFEYLV YPC+F+IK +G N+G ADD+AA V + C+V+ + V +TVR T SGKY+S+T+ APV N+ MLY+CYE+I +D RV+FKF
Sbjct: 42 ALSMILRTDADREGRKMG--------NPRAFEYLVDYPCKFQIKAVGHNKGNLADDLAALVGSVCEVEPAAVEYTVRDTDSGKYRSVTLMAPVSNSDMLYKCYEVIGQDERVRFKF 149
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A836C812_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C812_9STRA) HSP 1 Score: 125 bits (314), Expect = 7.330e-31 Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 3
Query: 441 ARSMVLRPDWEREGRVFGLRMPPRKEGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
AR M LR D +REGR G R FEYLV+YPCEF+IKV+G N+ + ADD+AA V+A C+V+ V +T R T SGKY S+T+ APV + MLY CY I ED RVKFKF
Sbjct: 43 ARGMALRSDDDREGRKLG--------NPRVFEYLVEYPCEFQIKVVGFNDASLADDLAAIVAATCEVEVGAVTYTTRETESGKYSSVTLTAPVASPAMLYECYAKIGEDARVKFKF 150
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A6U5NVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5NVB4_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.170e-22 Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 3
Query: 516 EGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
E R F+ LV+YPC+F +K++G NEG FA ++ + V+ C+ + DV +T R + GK+ S+TV APV+NA+MLY YE +D+DPRVKFKF
Sbjct: 57 EKSRVFDALVEYPCKFTMKIVGANEGNFAQEMVSLVADVCEKEMEDVAYTTR--AMGKWTSVTVKAPVENAEMLYAIYEAVDKDPRVKFKF 145
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: B5Y5R9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5R9_PHATC) HSP 1 Score: 103 bits (258), Expect = 7.570e-22 Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 303 PGVRVGEGFNLFLYDRGLSASTTAHQSQPSPTRWHRATSFHIAREDARSMVLRPDWEREGRVFGLRMPPRK-EGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
P R G+GF G + S A + P R F + + + +P+++ +G + L R E R FE LV YPC+F +K++G NEG F +++ A V+ +C V A ++ +VR + GK+ S+TV APVQ+A+MLY YE+ID DPRVKFKF
Sbjct: 100 PSARAGQGF-------GKTRSPVAQRITPP-----REKPF-VGIGPPLNDITKPEYDDQG--YTLYADERTGEKSRVFEALVDYPCDFTMKIVGANEGAFVEEMVAVVAESCLVQADSIQHSVR--ALGKWTSVTVQAPVQSAEMLYGLYEVIDRDPRVKFKF 245
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A7S2SR06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR06_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.930e-21 Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 3
Query: 531 FEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
FE ++ YPCEFEIKVIG EG FA D+ A +S V A D+ F+ R T + K+ S+++ A VQ + MLY+CYE +D+DPRVKFKF
Sbjct: 85 FERMLDYPCEFEIKVIGRLEGEFARDMVAIISTVTGVPAMDIAFSTRETPNNKFTSVSIKATVQTSDMLYQCYEELDKDPRVKFKF 170
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A7S0CBH8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBH8_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.710e-21 Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 3
Query: 525 RAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
R FE LV+YPCEF+IK++G N+GTF D+ A V+ +C V + V +T R+ +GK+ SITV+APVQ+A+MLY YE ID+D RVKFKF
Sbjct: 186 RVFEALVEYPCEFQIKIVGANDGTFVTDMIALVAESCGVKSDAVSWTERL--NGKWVSITVNAPVQSAEMLYALYEDIDKDARVKFKF 271
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A7S1Z075_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z075_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.790e-20 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 516 EGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
E R FE LV YPC+F +K++G NEG F +I V+ +C+V DV ++ R +GK+ S+TVHAPV++A+MLY YE +D DPRVKFKF
Sbjct: 162 EKKRVFEALVDYPCDFTMKIVGRNEGAFVLEIVQVVADSCEVGIEDVPYSKR--DNGKWTSVTVHAPVKDAEMLYTLYENVDRDPRVKFKF 250
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A1E7EX02_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX02_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.330e-20 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 3
Query: 525 RAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
R FE L++YP F +K++G NEG F ++I A V+ AC+ D + + +V +GK+ S+T HAPVQNA+MLY YE ID DPRVKFKF
Sbjct: 136 RVFEALIEYPSIFTMKIVGANEGLFVEEIVAVVAEACESDFEQINHSTKV--NGKWVSVTCHAPVQNAEMLYALYEKIDLDPRVKFKF 221
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Match: A0A7S1BKS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKS9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.220e-19 Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 3
Query: 516 EGVRAFEYLVKYPCEFEIKVIGLNEGTFADDIAATVSAACQVDASDVRFTVRVTSSGKYQSITVHAPVQNAKMLYRCYEMIDEDPRVKFKF 788
E R FE LV+YPC F IK++G EG F D+ V+ C V +DV ++ R GK+ SITV APV+NA+MLY+ YE+I DPRVKFKF
Sbjct: 207 EKARVFESLVEYPCTFPIKIVGAKEGQFVTDMVDLVAETCNVGRTDVTYSER--EKGKWTSITVQAPVENAQMLYKVYEVIGRDPRVKFKF 295 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig659.17553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig659.17553.1 >prot_F-serratus_M_contig659.17553.1 ID=prot_F-serratus_M_contig659.17553.1|Name=mRNA_F-serratus_M_contig659.17553.1|organism=Fucus serratus male|type=polypeptide|length=186bp MRPPSLLATAIIFYRLARGLGFAPGVRVGEGFNLFLYDRGLSASTTAHQSback to top mRNA from alignment at F-serratus_M_contig659:164552..171676- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig659.17553.1 ID=mRNA_F-serratus_M_contig659.17553.1|Name=mRNA_F-serratus_M_contig659.17553.1|organism=Fucus serratus male|type=mRNA|length=7125bp|location=Sequence derived from alignment at F-serratus_M_contig659:164552..171676- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig659:164552..171676- >mRNA_F-serratus_M_contig659.17553.1 ID=mRNA_F-serratus_M_contig659.17553.1|Name=mRNA_F-serratus_M_contig659.17553.1|organism=Fucus serratus male|type=CDS|length=1116bp|location=Sequence derived from alignment at F-serratus_M_contig659:164552..171676- (Fucus serratus male)back to top |