mRNA_F-serratus_M_contig659.17560.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig659.17560.1
Unique NamemRNA_F-serratus_M_contig659.17560.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig659.17560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig659contigF-serratus_M_contig659:301034..301593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932020.4582508-CDS-F-serratus_M_contig659:301033..3012671622932020.4582508-CDS-F-serratus_M_contig659:301033..301267Fucus serratus maleCDSF-serratus_M_contig659 301034..301267 +
1690964105.854275-CDS-F-serratus_M_contig659:301033..3012671690964105.854275-CDS-F-serratus_M_contig659:301033..301267Fucus serratus maleCDSF-serratus_M_contig659 301034..301267 +
1622932020.4698598-CDS-F-serratus_M_contig659:301540..3015911622932020.4698598-CDS-F-serratus_M_contig659:301540..301591Fucus serratus maleCDSF-serratus_M_contig659 301541..301591 +
1690964105.8660514-CDS-F-serratus_M_contig659:301540..3015911690964105.8660514-CDS-F-serratus_M_contig659:301540..301591Fucus serratus maleCDSF-serratus_M_contig659 301541..301591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig659.17560.1prot_F-serratus_M_contig659.17560.1Fucus serratus malepolypeptideF-serratus_M_contig659 301034..301591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig659.17560.1

>prot_F-serratus_M_contig659.17560.1 ID=prot_F-serratus_M_contig659.17560.1|Name=mRNA_F-serratus_M_contig659.17560.1|organism=Fucus serratus male|type=polypeptide|length=95bp
PAPLPPPTQPLSAVANAYRPAPRVTGPPPGMTAGTSGGSVMPPTLPEWMP
MQFDPTAGSRAGGVDEDSANAGGMTGAAPIDVKILEEQMARNVAG
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mRNA from alignment at F-serratus_M_contig659:301034..301593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig659.17560.1 ID=mRNA_F-serratus_M_contig659.17560.1|Name=mRNA_F-serratus_M_contig659.17560.1|organism=Fucus serratus male|type=mRNA|length=560bp|location=Sequence derived from alignment at F-serratus_M_contig659:301034..301593+ (Fucus serratus male)
CCCGCCCCATTGCCACCCCCCACCCAGCCGTTGTCAGCCGTGGCGAATGC
GTACCGCCCAGCTCCGCGGGTAACGGGTCCCCCCCCGGGTATGACGGCGG
GGACCTCAGGGGGGTCAGTCATGCCCCCGACGCTTCCGGAGTGGATGCCG
ATGCAGTTTGATCCGACCGCGGGTAGCCGTGCGGGTGGGGTTGACGAGGA
CTCGGCAAATGCTGGAGGGATGACGGGAGCGGCGGTAAGTCGTTGTCGAA
GCGGGATGATGTATCGTTCGCCTGGAATGTGCAGTGGTTTTTTAGTGCTA
TTTTGTGTTGGGGGTTTCCATGGGCGGTGTTTTTTTGTTTTGTTTTAGTT
TTTGCTCGTGTTTAATAATTTCCGCCCTGACAGCGAACGAACGAACGAAC
GAGCACGATGTTGATACAACACCCCGGACAAATAGATTTCTTGAACGTCG
TCCGGCTAATGTAGAACTTTTGCCTCTTTCCCACCCTTCGGCGTCTGCAA
TCTCTAGCCTATCGACGTCAAAATCCTGGAAGAACAAATGGCTCGAAATG
TGGCCGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig659:301034..301593+

>mRNA_F-serratus_M_contig659.17560.1 ID=mRNA_F-serratus_M_contig659.17560.1|Name=mRNA_F-serratus_M_contig659.17560.1|organism=Fucus serratus male|type=CDS|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig659:301034..301593+ (Fucus serratus male)
CCCGCCCCATTGCCACCCCCCACCCAGCCGTTGTCAGCCGTGGCGAATGC
GTACCGCCCAGCTCCGCGGGTAACGGGTCCCCCCCCGGGTATGACGGCGG
GGACCTCAGGGGGGTCAGTCATGCCCCCGACGCTTCCGGAGTGGATGCCG
ATGCAGTTTGATCCGACCGCGGGTAGCCGTGCGGGTGGGGTTGACGAGGA
CTCGGCAAATGCTGGAGGGATGACGGGAGCGGCGCCCGCCCCATTGCCAC
CCCCCACCCAGCCGTTGTCAGCCGTGGCGAATGCGTACCGCCCAGCTCCG
CGGGTAACGGGTCCCCCCCCGGGTATGACGGCGGGGACCTCAGGGGGGTC
AGTCATGCCCCCGACGCTTCCGGAGTGGATGCCGATGCAGTTTGATCCGA
CCGCGGGTAGCCGTGCGGGTGGGGTTGACGAGGACTCGGCAAATGCTGGA
GGGATGACGGGAGCGGCGCCTATCGACGTCAAAATCCTGGAAGAACAAAT
GGCTCGAAATGTGGCCGGCCCTATCGACGTCAAAATCCTGGAAGAACAAA
TGGCTCGAAATGTGGCCGGC
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