mRNA_F-serratus_M_contig658.17545.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig658.17545.1
Unique NamemRNA_F-serratus_M_contig658.17545.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig658.17545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig658contigF-serratus_M_contig658:289677..289863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932019.0443978-CDS-F-serratus_M_contig658:289676..2897621622932019.0443978-CDS-F-serratus_M_contig658:289676..289762Fucus serratus maleCDSF-serratus_M_contig658 289677..289762 +
1690964105.0979853-CDS-F-serratus_M_contig658:289676..2897621690964105.0979853-CDS-F-serratus_M_contig658:289676..289762Fucus serratus maleCDSF-serratus_M_contig658 289677..289762 +
1622932019.0740201-CDS-F-serratus_M_contig658:289784..2898631622932019.0740201-CDS-F-serratus_M_contig658:289784..289863Fucus serratus maleCDSF-serratus_M_contig658 289785..289863 +
1690964105.1097496-CDS-F-serratus_M_contig658:289784..2898631690964105.1097496-CDS-F-serratus_M_contig658:289784..289863Fucus serratus maleCDSF-serratus_M_contig658 289785..289863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig658.17545.1prot_F-serratus_M_contig658.17545.1Fucus serratus malepolypeptideF-serratus_M_contig658 289677..289863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig658.17545.1

>prot_F-serratus_M_contig658.17545.1 ID=prot_F-serratus_M_contig658.17545.1|Name=mRNA_F-serratus_M_contig658.17545.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MLVLDHLHEGDSEKNACPPVAHISALFFLSFSLDWKIITCGKNEFGKNTE
THENE
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mRNA from alignment at F-serratus_M_contig658:289677..289863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig658.17545.1 ID=mRNA_F-serratus_M_contig658.17545.1|Name=mRNA_F-serratus_M_contig658.17545.1|organism=Fucus serratus male|type=mRNA|length=187bp|location=Sequence derived from alignment at F-serratus_M_contig658:289677..289863+ (Fucus serratus male)
ATGCTTGTACTTGATCATCTTCATGAGGGTGACAGCGAGAAAAATGCTTG
CCCTCCGGTCGCGCACATCAGCGCCTTGTTCTTCTTGTCTTTATCCGTTA
TGTCTCAGGTCTTTCAGCTTGGACTGGAAAATCATCACCTGTGGAAAAAA
TGAATTTGGGAAAAATACGGAAACACACGAAAACGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig658:289677..289863+

>mRNA_F-serratus_M_contig658.17545.1 ID=mRNA_F-serratus_M_contig658.17545.1|Name=mRNA_F-serratus_M_contig658.17545.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig658:289677..289863+ (Fucus serratus male)
ATGCTTGTACTTGATCATCTTCATGAGGGTGACAGCGAGAAAAATGCTTG
CCCTCCGGTCGCGCACATCAGCGCCTTGTTCTTCTTATGCTTGTACTTGA
TCATCTTCATGAGGGTGACAGCGAGAAAAATGCTTGCCCTCCGGTCGCGC
ACATCAGCGCCTTGTTCTTCTTGTCTTTCAGCTTGGACTGGAAAATCATC
ACCTGTGGAAAAAATGAATTTGGGAAAAATACGGAAACACACGAAAACGA
GGTCTTTCAGCTTGGACTGGAAAATCATCACCTGTGGAAAAAATGAATTT
GGGAAAAATACGGAAACACACGAAAACGAG
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