mRNA_F-serratus_M_contig657.17543.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig657.17543.1
Unique NamemRNA_F-serratus_M_contig657.17543.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig657.17543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig657contigF-serratus_M_contig657:414251..414824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig657.17543.1prot_F-serratus_M_contig657.17543.1Fucus serratus malepolypeptideF-serratus_M_contig657 414371..414697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932018.873973-UTR-F-serratus_M_contig657:414250..4143701622932018.873973-UTR-F-serratus_M_contig657:414250..414370Fucus serratus maleUTRF-serratus_M_contig657 414251..414370 +
1690964105.0079286-UTR-F-serratus_M_contig657:414250..4143701690964105.0079286-UTR-F-serratus_M_contig657:414250..414370Fucus serratus maleUTRF-serratus_M_contig657 414251..414370 +
1622932018.910432-UTR-F-serratus_M_contig657:414697..4148241622932018.910432-UTR-F-serratus_M_contig657:414697..414824Fucus serratus maleUTRF-serratus_M_contig657 414698..414824 +
1690964105.0441434-UTR-F-serratus_M_contig657:414697..4148241690964105.0441434-UTR-F-serratus_M_contig657:414697..414824Fucus serratus maleUTRF-serratus_M_contig657 414698..414824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932018.8906205-CDS-F-serratus_M_contig657:414370..4146971622932018.8906205-CDS-F-serratus_M_contig657:414370..414697Fucus serratus maleCDSF-serratus_M_contig657 414371..414697 +
1690964105.0305092-CDS-F-serratus_M_contig657:414370..4146971690964105.0305092-CDS-F-serratus_M_contig657:414370..414697Fucus serratus maleCDSF-serratus_M_contig657 414371..414697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig657.17543.1

>prot_F-serratus_M_contig657.17543.1 ID=prot_F-serratus_M_contig657.17543.1|Name=mRNA_F-serratus_M_contig657.17543.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MPFSSSASIVGRIHCNASPSTPVWGLRLLVRDDSMGGTLPSMASFRSAGT
VGPSKLADLASAPPSSRSSSGSTSCVSSPRSDNVPCVSTSSSEIASCHSC
SCCSCPNS*
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mRNA from alignment at F-serratus_M_contig657:414251..414824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig657.17543.1 ID=mRNA_F-serratus_M_contig657.17543.1|Name=mRNA_F-serratus_M_contig657.17543.1|organism=Fucus serratus male|type=mRNA|length=574bp|location=Sequence derived from alignment at F-serratus_M_contig657:414251..414824+ (Fucus serratus male)
TTCCGCCATTCGTCCCATTCGTGCGATTCCATCGCCTGTCGCCGATTCCT
CGGTTCTGATACATCTAGCGTCGCTTGCAAAGCCATCTGACCTCCGCCGT
CACATGATAACACATCCTCCATGCCGTTTTCTTCTTCCGCCTCAATCGTC
GGCAGGATACACTGCAACGCTTCCCCCTCCACACCGGTGTGGGGTCTCCG
ACTCCTGGTACGCGATGACAGTATGGGCGGTACATTGCCGTCGATGGCGA
GTTTCCGGAGCGCGGGTACGGTCGGTCCCTCCAAACTTGCTGACCTAGCT
TCCGCTCCCCCTTCCTCACGCTCGTCTTCCGGAAGCACTTCCTGCGTATC
CTCTCCAAGATCTGATAACGTCCCCTGCGTCTCCACTTCGAGTTCCGAAA
TCGCCTCCTGCCACTCGTGCTCGTGTTGTTCATGTCCTAACTCTTGAACG
TTGAGCTGCGGGGTACCTCTCTCAACAATGATGTCCCCTCCCGCCGGCTT
CTTGCCGCGGTCGTCACTGCCAGTGCCGTCACTCCCTGTCTTTTTAGGCC
CATCCATCCACTGAACGGCCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig657:414251..414824+

>mRNA_F-serratus_M_contig657.17543.1 ID=mRNA_F-serratus_M_contig657.17543.1|Name=mRNA_F-serratus_M_contig657.17543.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig657:414251..414824+ (Fucus serratus male)
ATGCCGTTTTCTTCTTCCGCCTCAATCGTCGGCAGGATACACTGCAACGC
TTCCCCCTCCACACCGGTGTGGGGTCTCCGACTCCTGGTACGCGATGACA
GTATGGGCGGTACATTGCCGTCGATGGCGAGTTTCCGGAGCGCGGGTACG
GTCGGTCCCTCCAAACTTGCTGACCTAGCTTCCGCTCCCCCTTCCTCACG
CTCGTCTTCCGGAAGCACTTCCTGCGTATCCTCTCCAAGATCTGATAACG
TCCCCTGCGTCTCCACTTCGAGTTCCGAAATCGCCTCCTGCCACTCGTGC
TCGTGTTGTTCATGTCCTAACTCTTGAATGCCGTTTTCTTCTTCCGCCTC
AATCGTCGGCAGGATACACTGCAACGCTTCCCCCTCCACACCGGTGTGGG
GTCTCCGACTCCTGGTACGCGATGACAGTATGGGCGGTACATTGCCGTCG
ATGGCGAGTTTCCGGAGCGCGGGTACGGTCGGTCCCTCCAAACTTGCTGA
CCTAGCTTCCGCTCCCCCTTCCTCACGCTCGTCTTCCGGAAGCACTTCCT
GCGTATCCTCTCCAAGATCTGATAACGTCCCCTGCGTCTCCACTTCGAGT
TCCGAAATCGCCTCCTGCCACTCGTGCTCGTGTTGTTCATGTCCTAACTC
TTGA
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