mRNA_F-serratus_M_contig656.17534.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig656.17534.1
Unique NamemRNA_F-serratus_M_contig656.17534.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: D8LPV4_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV4_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 9.650e-67
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            YNGPREAAGIVDYAT MLERSGWVPK PQLT   VIDEKCGGTKICVIAALPHILDSGKAGRE YIE  RGAAKKSRNPYLS++WTEGGAQPALEEATGLTFG+PA++AIS+EKK
Sbjct:  100 YNGPREAAGIVDYATGMLERSGWVPKTPQLTEKGVIDEKCGGTKICVIAALPHILDSGKAGREGYIETVRGAAKKSRNPYLSLMWTEGGAQPALEEATGLTFGYPAVIAISVEKK 214          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A6V1Q1R9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q1R9_HETAK)

HSP 1 Score: 149 bits (375), Expect = 1.030e-40
Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEK 342
            Y GPREA  IV YA E+LE SG VP + +LTG    D+ CGG +ICV+AALPHILDSGKAGRE+Y+E+    AKK R    S  W EG AQPA EEA GLTFGFPALVA+S EK
Sbjct:  261 YRGPREAPAIVQYALELLEASGVVPSIEELTGQRAFDDACGGKRICVLAALPHILDSGKAGREEYLERLVQVAKKVRGKPFSFFWFEGTAQPAAEEAYGLTFGFPALVAVSAEK 374          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: I2CQT3_NANGC (Protein disulfide-isomerase A6 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQT3_NANGC)

HSP 1 Score: 131 bits (330), Expect = 1.680e-36
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKKV 348
            Y GPREAAGI++Y  + LER G  P+V QL   +  +E+C G  ICV+AALPH+LD+GK GREDY+      A+K+R     + W+E GAQ A EEA GLTFGFPA+ A+S +K V
Sbjct:    7 YQGPREAAGIIEYTLDWLERHGAAPEVNQLLSPETYEEECAGPVICVLAALPHLLDTGKKGREDYLAVLMEVAQKNRKAPFRLFWSEAGAQSAAEEALGLTFGFPAVAALSKDKHV 122          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A7S2V150_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V150_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.730e-35
Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEK 342
            YNGPREA+ IV YA  MLE +G  P VP+LT     D  C G +ICV+AALPHILDSGK+GR +YIE     AKK R   +S+ W EGG Q  LE + GLTFGFPALVA++ EK
Sbjct:  256 YNGPREASDIVQYALNMLEEAGIDPAVPELTKQKEFDSACSGKRICVLAALPHILDSGKSGRNEYIEMLINVAKKLRGKPISLFWFEGGMQVELEASFGLTFGFPALVAVNKEK 369          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A6G0X5N7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5N7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.060e-31
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+AAGIV YA   LE+ G   KVP++T   V+++ C G  ICV+A LP+I+DSG AGRE Y+++  GAAK  R       W +GG Q  LE A  LTFG+PALVAIS++K+
Sbjct:  253 YQGPRQAAGIVGYALNKLEKLGGGLKVPEITSTKVLNDHCAGKSICVVALLPNIIDSGAAGRESYLKEVDGAAKLVRGKPFRFSWVQGGDQDKLESAFDLTFGYPALVAISLDKQ 367          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A0A7CNR2_9STRA (Disulfide-isomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CNR2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.760e-30
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+A+GI  YA + LE  G   KVP++T G V+ + C G  ICV+A LPHI+D GKA RE Y+ +  GAAK  R       W +GG QP LE A  LTFG+P ++AI++EK+
Sbjct:  266 YQGPRQASGITAYALQKLETLGGGMKVPEITSGKVLTDHCAGKAICVLAFLPHIIDGGKAARESYLAQVEGAAKLVRGKPFRFAWVQGGDQPGLEAAFELTFGYPTVLAINLEKQ 380          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A3R7D4L0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D4L0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.640e-30
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+A+GIV YA   LE+ G   KVP++T    + + C G  ICV+A LPHI DSG  GR DY+ +  GAAK  R       W +GG Q  LE+A  LTFG+PA+VAIS++K+
Sbjct:  280 YQGPRQASGIVSYALHQLEKLGGGLKVPEITSMSTMQDHCAGKSICVVAVLPHIFDSGAKGRTDYLSQVEGAAKLVRGKPFRFSWVQGGDQNKLEQAFDLTFGYPAVVAISLDKQ 394          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A067CFE8_SAPPC (Thioredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFE8_SAPPC)

HSP 1 Score: 119 bits (297), Expect = 2.060e-29
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+A+GI  YA + LE  G   K+P++T   V+ + C G  ICV+A LPHI+D GKAGRE Y+ +   AAK  R       W +GG Q ALEEA GLTFG+P+++AI+++K+
Sbjct:  250 YQGPRQASGITAYALQKLETLGGGMKLPEVTSEKVLLDHCAGKAICVLALLPHIIDGGKAGREAYLAQVESAAKLVRGKPFRFAWVQGGNQAALEEAFGLTFGYPSVLAINLDKQ 364          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: W4G7Q2_9STRA (Protein disulfide-isomerase domain n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.390e-29
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+A+GIV YA   LE+ G   KVP++T    + + C G  ICV+A LPHI+DSG  GR DY+ +  GAAK  R       W +GG Q  LE A  L+FG+PA+VAIS++K+
Sbjct:  262 YQGPRQASGIVSYALNQLEKLGGGLKVPEITSTAALHDHCAGKSICVVALLPHIIDSGAKGRTDYLSQVEGAAKLVRGKPFRFSWVQGGDQSKLEHAFDLSFGYPAVVAISLDKQ 376          
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Match: A0A0A7CMC1_9STRA (Disulfide-isomerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CMC1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.100e-28
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAALPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGLTFGFPALVAISIEKK 345
            Y GPR+A+GI  YA + LE  G   K+P++T   ++ + C G  ICV+A LPH+++SGKAGRE Y+++  GAAK  R       W +GG Q A EE   LTFG+P+++AI+++K+
Sbjct:  252 YQGPRQASGITAYALQKLETLGGGMKIPEITSSKILSDHCAGKAICVVAFLPHLVESGKAGREAYLDQVEGAAKLVRGKPFRFAWVQGGDQLAFEEKFELTFGYPSVLAINLDKQ 366          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig656.17534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPV4_ECTSI9.650e-6787.83Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6V1Q1R9_HETAK1.030e-4064.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CQT3_NANGC1.680e-3653.45Protein disulfide-isomerase A6 n=1 Tax=Nannochloro... [more]
A0A7S2V150_9STRA1.730e-3558.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0X5N7_9STRA4.060e-3152.17Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0A7CNR2_9STRA1.760e-3049.57Disulfide-isomerase n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A3R7D4L0_9STRA5.640e-3049.57Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067CFE8_SAPPC2.060e-2948.70Thioredoxin domain-containing protein n=2 Tax=Sapr... [more]
W4G7Q2_9STRA2.390e-2948.70Protein disulfide-isomerase domain n=9 Tax=Aphanom... [more]
A0A0A7CMC1_9STRA1.100e-2845.22Disulfide-isomerase n=1 Tax=Thraustotheca clavata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig656contigF-serratus_M_contig656:419637..420607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog2880.D8LPV4
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionThioredoxin domain
Ec32 orthologEc-02_004210.1
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig656.17534.1prot_F-serratus_M_contig656.17534.1Fucus serratus malepolypeptideF-serratus_M_contig656 419637..420607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932017.7461984-CDS-F-serratus_M_contig656:419636..4197991622932017.7461984-CDS-F-serratus_M_contig656:419636..419799Fucus serratus maleCDSF-serratus_M_contig656 419637..419799 -
1690964104.5773754-CDS-F-serratus_M_contig656:419636..4197991690964104.5773754-CDS-F-serratus_M_contig656:419636..419799Fucus serratus maleCDSF-serratus_M_contig656 419637..419799 -
1622932017.7780182-CDS-F-serratus_M_contig656:420194..4203311622932017.7780182-CDS-F-serratus_M_contig656:420194..420331Fucus serratus maleCDSF-serratus_M_contig656 420195..420331 -
1690964104.5925307-CDS-F-serratus_M_contig656:420194..4203311690964104.5925307-CDS-F-serratus_M_contig656:420194..420331Fucus serratus maleCDSF-serratus_M_contig656 420195..420331 -
1622932017.7947958-CDS-F-serratus_M_contig656:420559..4206071622932017.7947958-CDS-F-serratus_M_contig656:420559..420607Fucus serratus maleCDSF-serratus_M_contig656 420560..420607 -
1690964104.6067758-CDS-F-serratus_M_contig656:420559..4206071690964104.6067758-CDS-F-serratus_M_contig656:420559..420607Fucus serratus maleCDSF-serratus_M_contig656 420560..420607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig656.17534.1

>prot_F-serratus_M_contig656.17534.1 ID=prot_F-serratus_M_contig656.17534.1|Name=mRNA_F-serratus_M_contig656.17534.1|organism=Fucus serratus male|type=polypeptide|length=116bp
YNGPREAAGIVDYATEMLERSGWVPKVPQLTGGDVIDEKCGGTKICVIAA
LPHILDSGKAGREDYIEKARGAAKKSRNPYLSVIWTEGGAQPALEEATGL
TFGFPALVAISIEKKV
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mRNA from alignment at F-serratus_M_contig656:419637..420607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig656.17534.1 ID=mRNA_F-serratus_M_contig656.17534.1|Name=mRNA_F-serratus_M_contig656.17534.1|organism=Fucus serratus male|type=mRNA|length=971bp|location=Sequence derived from alignment at F-serratus_M_contig656:419637..420607- (Fucus serratus male)
TATAATGGCCCGCGCGAGGCGGCGGGAATTGTGGACTACGCTACCGAGGT GAGTAGACTTGGGAAGGCTCTTATCTAATTTGTGCGGTATTTGAGAGGAG GCGGTGGGAAGGCGTGCGTCGTTAGCTCTCGTTGGGAGGGAGGGTTGCTC GCCTTTTTTTCGTCTCGATTCTGTCCACTCTCCCACCCCTGGCCTTTTCA CCGCCTCCCAGGAGACCTTCGTTGCCCTTGTTATTGAATTCCCTAAACAT GTGTCGTTCGTGTTGTACTGCGACAGATGCTCGAACGATCGGGATGGGTC CCGAAGGTCCCTCAGCTGACGGGTGGTGACGTCATCGACGAGAAATGCGG GGGCACTAAGATTTGTGTCATCGCGGCCCTGCCGCACATCCTTGACTCGG GCAAGGCTGGCAGGTGAAAGCATGACCGAGACGAAAGAGGTTACCTTGAG GCAGGGTTGCCCTACACCGCCTTGCCCCGGTTTCTCATTACCTCCGTGAA TAGCTCTTGTTCTTGATCACTTCATGTATTGTATGGGTTGCCAATCCCGC ATGGAAAGCCCGGGGCAGCTTGACGAACGAAATGAGACCAGTAACCTTGC GTTTTGATTTGAGTGAACGCCGTTAGCACTTCATGATGGTTTTCATTGAG TGGAGGCGATGATCCCTCCCTACGCCTGTCATAAGGAAATGGAGCACACA TGCTCACGCGGATTGTTCCTCTTGCCTGCTATACTACCCCATTTGATCTG TTGCCCGCTTTCTCCCGTTTCCACCGGCTGTCACTTTCGCGGTGATTTAC CCCTCCAGAGAAGACTACATTGAGAAGGCCAGGGGCGCGGCCAAGAAGTC GAGGAACCCCTACCTCAGCGTCATTTGGACGGAGGGCGGCGCTCAGCCCG CTCTCGAGGAGGCGACGGGGCTCACATTCGGCTTCCCGGCTCTCGTGGCA ATCAGCATCGAAAAAAAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig656:419637..420607-

>mRNA_F-serratus_M_contig656.17534.1 ID=mRNA_F-serratus_M_contig656.17534.1|Name=mRNA_F-serratus_M_contig656.17534.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig656:419637..420607- (Fucus serratus male)
TATAATGGCCCGCGCGAGGCGGCGGGAATTGTGGACTACGCTACCGAGTA
TAATGGCCCGCGCGAGGCGGCGGGAATTGTGGACTACGCTACCGAGATGC
TCGAACGATCGGGATGGGTCCCGAAGGTCCCTCAGCTGACGGGTGGTGAC
GTCATCGACGAGAAATGCGGGGGCACTAAGATTTGTGTCATCGCGGCCCT
GCCGCACATCCTTGACTCGGGCAAGGCTGGCAGATGCTCGAACGATCGGG
ATGGGTCCCGAAGGTCCCTCAGCTGACGGGTGGTGACGTCATCGACGAGA
AATGCGGGGGCACTAAGATTTGTGTCATCGCGGCCCTGCCGCACATCCTT
GACTCGGGCAAGGCTGGCAGAGAAGACTACATTGAGAAGGCCAGGGGCGC
GGCCAAGAAGTCGAGGAACCCCTACCTCAGCGTCATTTGGACGGAGGGCG
GCGCTCAGCCCGCTCTCGAGGAGGCGACGGGGCTCACATTCGGCTTCCCG
GCTCTCGTGGCAATCAGCATCGAAAAAAAGGTGAGAAGACTACATTGAGA
AGGCCAGGGGCGCGGCCAAGAAGTCGAGGAACCCCTACCTCAGCGTCATT
TGGACGGAGGGCGGCGCTCAGCCCGCTCTCGAGGAGGCGACGGGGCTCAC
ATTCGGCTTCCCGGCTCTCGTGGCAATCAGCATCGAAAAAAAGGTG
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