mRNA_F-serratus_M_contig656.17527.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig656.17527.1
Unique NamemRNA_F-serratus_M_contig656.17527.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.840e-22
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 3 
Query:  129 MKSFAMVALCCAG-AQAFVPVPK-GSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            MKSFA+ A  CAG A AF PVPK  S+G ++A    S++T + AKS+ALPFL+SPA LDG++ GDFGFDPLGLTENID+P+A
Sbjct:    1 MKSFAVFAAWCAGGALAFAPVPKVSSLGAKSAPARNSAATALDAKSKALPFLESPATLDGSMIGDFGFDPLGLTENIDIPFA 82
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S0BCB3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BCB3_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 2.080e-10
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query:  219 QRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            +R +SS TVMMA S+++PFL+ P  LDG LPGD GFDPL L++NI+L YA
Sbjct:   22 RRARSSGTVMMAMSKSIPFLECPKNLDGRLPGDVGFDPLYLSDNINLQYA 71
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.310e-10
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  129 MKSFAMVALCCAGAQAFVPVP--KGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            MKS A++    AGA AF      KG++         SSS  MMAKS+++PF   PAALDG+LPGD GFDPLGLT +ID  +A
Sbjct:    1 MKSAAVLVGALAGASAFQAASPLKGAVR-------SSSSMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLT-SIDFDWA 74
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.670e-10
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  213 TAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            T +R +SS+ VMMAKS A+PFL++P  LDG++ GD GFDPL L+ENI+L Y+
Sbjct:   32 TTRRARSSNVVMMAKSAAIPFLEAPDKLDGSMVGDQGFDPLYLSENINLEYS 83
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 9.670e-10
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  216 AQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            A RVQS STV M  S+A+PFLD+P  LDGTL GD GFDPL L+  I+L YA
Sbjct:   22 APRVQSRSTVTMVASKAIPFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYA 72
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2ZL17_9RHOD (Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S2ZL17_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 9.990e-9
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  216 AQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 368
            A+  +S+ TVMMA S+++PFL+ P  L+G+LPGD GFDPL L++NI+L YA
Sbjct:   70 AKTARSTGTVMMAMSKSIPFLECPKNLNGSLPGDVGFDPLYLSDNINLNYA 120
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: P93450_PORPP (Chlorophyll a-b binding protein of LHCII type III, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=P93450_PORPP)

HSP 1 Score: 62.4 bits (150), Expect = 1.070e-8
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:  228 QSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPY 365
            +++   MMAKS+A+PFL++PA LDGTL GD GFDPLGL+  +D+ Y
Sbjct:   23 KNAHVTMMAKSKAIPFLEAPAKLDGTLVGDVGFDPLGLSATLDVKY 68
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A835Z6T4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.440e-8
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  129 MKSFAMVALCCAGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDL 359
            MK+ A++AL   GA AF+P          A  V+SSST+ M  S++LPFL  P  LDG+LPGD GFDPL L+   +L
Sbjct:    2 MKAAAVLALA-GGAAAFMPA------TPLAGAVKSSSTMSMVASKSLPFLPKPEKLDGSLPGDVGFDPLNLSATDEL 71
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BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S3HZY8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HZY8_9SPIT)

HSP 1 Score: 60.5 bits (145), Expect = 5.760e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:  228 QSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPY 365
            Q ++  MMAKS+ALPFL+ PA+LDG++PGD GFDPLGL+    L +
Sbjct:   28 QRAAVSMMAKSQALPFLEKPASLDGSMPGDVGFDPLGLSSYFPLDW 73
[Close]
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2UVQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.530e-8
Identity = 44/105 (41.90%), Postives = 54/105 (51.43%), Query Frame = 3 
Query:  129 MKSFAMVALCC-AGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYAGGECPRSSAVFLCESASWGSFCLL 440
            M  +A  AL   AGA+AFV  P  S G       ++S   + AKS ALP+ ++P  LDGTLPGD GFDP G T N  LP   G   RS   +       G  C+L
Sbjct:    1 MAKYAAAALILSAGAEAFV-APASSAG-------RTSVAPLNAKSIALPWQEAPPGLDGTLPGDVGFDPFGFTNN--LPTTSGPSARSLKWYREAELIHGRICML 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR8_ECTSI1.840e-2263.41Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S0BCB3_9RHOD2.080e-1062.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A836CGA6_9STRA4.310e-1051.22Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2UB14_9STRA6.670e-1059.62Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A2V3J3F8_9FLOR9.670e-1064.71Chlorophyll a-b binding protein 7, chloroplastic n... [more]
A0A7S2ZL17_9RHOD9.990e-956.86Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 ... [more]
P93450_PORPP1.070e-858.70Chlorophyll a-b binding protein of LHCII type III,... [more]
A0A835Z6T4_9STRA2.440e-848.05Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S3HZY8_9SPIT5.760e-858.70Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A7S2UVQ7_9STRA8.530e-841.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig656contigF-serratus_M_contig656:222813..224564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog2880.D8LMR8
Preferred nameLhcr3
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CYNJ@1,2S5BM@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons2
Model size553
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig656.17527.1prot_F-serratus_M_contig656.17527.1Fucus serratus malepolypeptideF-serratus_M_contig656 222890..224436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932016.1478963-UTR-F-serratus_M_contig656:222812..2228891622932016.1478963-UTR-F-serratus_M_contig656:222812..222889Fucus serratus maleUTRF-serratus_M_contig656 222813..222889 -
1690964103.9458787-UTR-F-serratus_M_contig656:222812..2228891690964103.9458787-UTR-F-serratus_M_contig656:222812..222889Fucus serratus maleUTRF-serratus_M_contig656 222813..222889 -
1622932016.5456357-UTR-F-serratus_M_contig656:224436..2245641622932016.5456357-UTR-F-serratus_M_contig656:224436..224564Fucus serratus maleUTRF-serratus_M_contig656 224437..224564 -
1690964103.98098-UTR-F-serratus_M_contig656:224436..2245641690964103.98098-UTR-F-serratus_M_contig656:224436..224564Fucus serratus maleUTRF-serratus_M_contig656 224437..224564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932016.159759-CDS-F-serratus_M_contig656:222889..2229991622932016.159759-CDS-F-serratus_M_contig656:222889..222999Fucus serratus maleCDSF-serratus_M_contig656 222890..222999 -
1690964103.9599867-CDS-F-serratus_M_contig656:222889..2229991690964103.9599867-CDS-F-serratus_M_contig656:222889..222999Fucus serratus maleCDSF-serratus_M_contig656 222890..222999 -
1622932016.1747823-CDS-F-serratus_M_contig656:224198..2244361622932016.1747823-CDS-F-serratus_M_contig656:224198..224436Fucus serratus maleCDSF-serratus_M_contig656 224199..224436 -
1690964103.9708126-CDS-F-serratus_M_contig656:224198..2244361690964103.9708126-CDS-F-serratus_M_contig656:224198..224436Fucus serratus maleCDSF-serratus_M_contig656 224199..224436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig656.17527.1

>prot_F-serratus_M_contig656.17527.1 ID=prot_F-serratus_M_contig656.17527.1|Name=mRNA_F-serratus_M_contig656.17527.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MKSFAMVALCCAGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFL
DSPAALDGTLPGDFGFDPLGLTENIDLPYAGGECPRSSAVFLCESASWGS
FCLLLYRECLHSVVK*
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mRNA from alignment at F-serratus_M_contig656:222813..224564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig656.17527.1 ID=mRNA_F-serratus_M_contig656.17527.1|Name=mRNA_F-serratus_M_contig656.17527.1|organism=Fucus serratus male|type=mRNA|length=1752bp|location=Sequence derived from alignment at F-serratus_M_contig656:222813..224564- (Fucus serratus male)
GCGGTACATGTAGAGTAGTATCAGCTTCAAGTATAAGTACAAATTTACCC
TACACTTGCATCTATCTCTTTGTCGATCACAGCCCTCACCCAGGACTCAG
CCGCCAATACACGAGCTCAACTATAAACATGAAGTCCTTTGCAATGGTCG
CCTTGTGCTGTGCTGGTGCTCAGGCGTTCGTGCCGGTACCGAAGGGGTCA
ATCGGAGTTGAGACTGCCCAGCGAGTGCAGTCGTCTAGTACGGTTATGAT
GGCCAAGAGCAGGGCATTGCCTTTCCTTGATTCACCCGCGGCGCTCGACG
GCACCTTGCCGGGTGACTTCGGCTTTGACCCGCTCGGGCTGACGGAGAAC
ATCGACCTTCCCTACGGTATGTTTATACTTGAACGTCCGTGACTTGTGTC
ATGCGTACGTAGGCTAGTTGCTCCCCAGAATTATGATATCTTCTTCCGTG
GGCGGTTTGAGAGGCTTTACAAGTTTGAGTGTCGATTACAGTACCGCAGC
TAGAAGCAGCCAGAGATAAGAGCGTTTACATATGTCCCTGCACTCTAGTA
CAGTTATAACGTTTCGCTCGCATTGAGGCTGGCCTGAGCATCCTGCTTAA
AAATATGCTTGTCAGCTGGCGTCTTCGGGTTTTGATTACACCGCAAAACG
AAATAATAGGTGAAAGGCACGTTGTTCATTTTATACTCGTTCAAAGTATT
TTGACCTCTGCGTACTGCAGTATTCTATACTGCTTGTATACGCAACAGTA
ATATCGTTCGTAGTCTAAAGTAGTCACATGCAAACACGGCGAGGCTGAGA
GCTCCCTCTAACCGGGGGATGCTCAAAAGGTCTAGGTGCTGTTCTGATTT
TCTTTAAACAAGCATGAACAATAACTTGTGATATGGGTGTCCACAAGACA
GTGCCTTTCACAACAGAGTAATTTTTACTTTGTTTGTACATTGTGCATGA
TGATTAAGAATTCCCAACTAAACGTTTCGACAGACAGCAGTATGTATTAG
TCCAAACCCTGGCAGTAGCGGTGCCGATGCTCGGAAGGTTTGGACATGGA
CAGTAGCAGTGTAGATAGAGTACGTAAATCTGAATGTATCTAGACCTTTT
GAGCATCCACCTGTCCGGGAAAAATGTCAAAACATTTTTGTTATTTAACC
TGTAGAATCTGTAGTGTACAGGACGCCGCCGCGGAACTCGGGATGAATCA
CGCACCAGATTCAGTCTGGGTATAGAGATGAGCAGGCTGACGCGGGCGGG
ACTGCCAAACCCGTCTCGCGACACCGAATCCTCAAGCGCGAACGCGGATA
GGGAAATATTAATCTTTCTTGTACAGCTGACCACGTGCAAGATTGGCGCT
GATCCATAATCTTGCTATCTGTTGTGTGACCACACATACAAACGAAGTAT
TTTCTCAATTTAGCTAGATGTACAGTACATTTTACTGAAATACGGTGTAA
GAATATGCTGCATTCTTAAAAAAACGCGTTCTCTCCCGATGTCCTCGACG
TGCATTTCGTTTGCCCCGTGCCATGCACCGCTGTGCTACCTACCTGGACT
TCTTCAACCTATAAGCTGGCGGTGAGTGCCCCCGCAGTTCAGCAGTATTC
TTGTGCGAATCCGCCTCGTGGGGGAGCTTTTGTTTGCTACTGTATCGCGA
GTGTCTTCACTCGGTAGTCAAATAATCCGAAATCATGAAATTTATCACTA
TATGGAGAACAAGGACGTATGAGTTGTGAATACCACGTGAGCATATATGT
GC
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Coding sequence (CDS) from alignment at F-serratus_M_contig656:222813..224564-

>mRNA_F-serratus_M_contig656.17527.1 ID=mRNA_F-serratus_M_contig656.17527.1|Name=mRNA_F-serratus_M_contig656.17527.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig656:222813..224564- (Fucus serratus male)
ATGAAGTCCTTTGCAATGGTCGCCTTGTGCTGTGCTGGTGCTCAGGCGTT
CGTGCCGGTACCGAAGGGGTCAATCGGAGTTGAGACTGCCCAGCGAGTGC
AGTCGTCTAGTACGGTTATGATGGCCAAGAGCAGGGCATTGCCTTTCCTT
GATTCACCCGCGGCGCTCGACGGCACCTTGCCGGGTGACTTCGGCTTTGA
CCCGCTCGGGCTGACGGAGAACATCGACCTTCCCTACGATGAAGTCCTTT
GCAATGGTCGCCTTGTGCTGTGCTGGTGCTCAGGCGTTCGTGCCGGTACC
GAAGGGGTCAATCGGAGTTGAGACTGCCCAGCGAGTGCAGTCGTCTAGTA
CGGTTATGATGGCCAAGAGCAGGGCATTGCCTTTCCTTGATTCACCCGCG
GCGCTCGACGGCACCTTGCCGGGTGACTTCGGCTTTGACCCGCTCGGGCT
GACGGAGAACATCGACCTTCCCTACGCTGGCGGTGAGTGCCCCCGCAGTT
CAGCAGTATTCTTGTGCGAATCCGCCTCGTGGGGGAGCTTTTGTTTGCTA
CTGTATCGCGAGTGTCTTCACTCGGTAGTCAAATAACTGGCGGTGAGTGC
CCCCGCAGTTCAGCAGTATTCTTGTGCGAATCCGCCTCGTGGGGGAGCTT
TTGTTTGCTACTGTATCGCGAGTGTCTTCACTCGGTAGTCAAATAA
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