mRNA_F-serratus_M_contig6537.17516.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6537.17516.1
Unique NamemRNA_F-serratus_M_contig6537.17516.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 130 bits (326), Expect = 1.220e-33
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 NVPNFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGGGGHQVDGAD 210
            NVP F GQFHKSLPHD++G+V+P AYQLLLDCI+SNDINVCDQVPSGVES GRKLVNPLGGGGHQVDGAD
Sbjct:   86 NVPLFDGQFHKSLPHDDVGRVNPEAYQLLLDCIESNDINVCDQVPSGVESDGRKLVNPLGGGGHQVDGAD 155          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.790e-25
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 NVPNFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGGGGHQVDGAD 210
            NVP+F+GQFHKSLPHD+ G V   +YQ LLDC+ S D+NVCDQVPSG  + G K++NPLGG  HQVDGAD
Sbjct:   83 NVPDFIGQFHKSLPHDKFGTVSKTSYQKLLDCVFSADVNVCDQVPSGASARGAKMINPLGGTAHQVDGAD 152          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 85.9 bits (211), Expect = 5.800e-18
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   13 FVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGGGGHQVDGAD 210
              GQ+HK+LPH++ GQV+   YQ LLDC++++DINVCD VP+G   G  KL NPLGG  HQVDGAD
Sbjct:  129 LAGQYHKTLPHNKYGQVNKDDYQKLLDCVRTSDINVCDNVPAG---GSAKLTNPLGGTAHQVDGAD 191          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 60.8 bits (146), Expect = 3.710e-9
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   10 NFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGR--KLVNP 174
            +   +FHKSLPHD+LGQVD  A+  L DCI + D+++C+ VP G   G    +LVNP
Sbjct:   49 DLAAKFHKSLPHDDLGQVDADAFAALEDCILNGDLSICEDVPVGNSEGDPVGRLVNP 105          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: UPI001359B6F0 (vanadium-dependent haloperoxidase n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI001359B6F0)

HSP 1 Score: 60.5 bits (145), Expect = 5.050e-9
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 VPNFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGGGGHQVDGAD 210
            VPN+ GQFHKSLPH+  G V P AY  LL+ I++      +Q+P+G   G  KL NPL    + ++G D
Sbjct:   63 VPNYSGQFHKSLPHNNNGMVAPLAYGKLLEAIQTGTFEAFEQIPAG---GPVKLANPLAAQVYDLEGRD 128          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 60.5 bits (145), Expect = 5.100e-9
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 NVPNF--VGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGG 183
            N+ +F     FHKSLPHDELGQV    ++ L++C+ S D + C +VP+G   G   LVNPLGG
Sbjct:   96 NLGDFSSAATFHKSLPHDELGQVFSFDFEELIECVASGDFDTCQEVPAGNVEG--FLVNPLGG 156          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.950e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 FHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGG 183
            FHKSLPHD LGQVD AA++ L +CI   D ++C+ VP+G      +L NPL G
Sbjct:  113 FHKSLPHDSLGQVDSAAFEALTECIAQGDFDICELVPAGDVG---RLSNPLAG 162          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.780e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 FHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGG 183
            FHKSLPHD LGQV+   + LL++CI   D + C+ VP+G +    +L NPLGG
Sbjct:  113 FHKSLPHDSLGQVNSEDFDLLMECIAQGDFDTCELVPAGDDG---RLSNPLGG 162          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 58.9 bits (141), Expect = 1.780e-8
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   10 NFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNP 174
            +    FHKSLPHDELGQV    + +L DCI + D ++C+ VP+G  +G  +LVNP
Sbjct:  172 DLATMFHKSLPHDELGQVTADDFAILEDCILNGDFSICEDVPAGDPAG--RLVNP 224          
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Match: UPI0019EFA36E (Vanadium-dependent haloperoxidase n=1 Tax=Nostocales cyanobacterium LEGE 11386 TaxID=1828825 RepID=UPI0019EFA36E)

HSP 1 Score: 58.2 bits (139), Expect = 3.310e-8
Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1
Query:    7 PNFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVESGGRKLVNPLGGGGHQVDGAD 210
            PNF+  F K LPH+ELG+VD  AY  LL  +KS      + +P G    GRKL NP  G G  + G D
Sbjct:   79 PNFIANFSKGLPHNELGEVDAKAYNALLKALKSGKPQDFEAIPLGK---GRKLTNPQAGLGFDLQGPD 143          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6537.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO1.220e-3387.14Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI2.790e-2567.14Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A411NJW8_SACJA5.800e-1860.61Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
PRXV_ASCNO3.710e-949.12Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
UPI001359B6F05.050e-944.93vanadium-dependent haloperoxidase n=1 Tax=Methylic... [more]
A0A3G3BM28_SACJA5.100e-949.21Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM6_9PHAE6.950e-952.83Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE1.780e-850.94Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
O82433_FUCDI1.780e-849.09Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
UPI0019EFA36E3.310e-845.59Vanadium-dependent haloperoxidase n=1 Tax=Nostocal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6537contigF-serratus_M_contig6537:7826..8744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.5e-21
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size213
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932013.7688153-CDS-F-serratus_M_contig6537:7825..78851622932013.7688153-CDS-F-serratus_M_contig6537:7825..7885Fucus serratus maleCDSF-serratus_M_contig6537 7826..7885 +
1690964102.7388165-CDS-F-serratus_M_contig6537:7825..78851690964102.7388165-CDS-F-serratus_M_contig6537:7825..7885Fucus serratus maleCDSF-serratus_M_contig6537 7826..7885 +
1622932013.786267-CDS-F-serratus_M_contig6537:8592..87421622932013.786267-CDS-F-serratus_M_contig6537:8592..8742Fucus serratus maleCDSF-serratus_M_contig6537 8593..8742 +
1690964102.7511733-CDS-F-serratus_M_contig6537:8592..87421690964102.7511733-CDS-F-serratus_M_contig6537:8592..8742Fucus serratus maleCDSF-serratus_M_contig6537 8593..8742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6537.17516.1prot_F-serratus_M_contig6537.17516.1Fucus serratus malepolypeptideF-serratus_M_contig6537 7826..8742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6537.17516.1

>prot_F-serratus_M_contig6537.17516.1 ID=prot_F-serratus_M_contig6537.17516.1|Name=mRNA_F-serratus_M_contig6537.17516.1|organism=Fucus serratus male|type=polypeptide|length=70bp
NVPNFVGQFHKSLPHDELGQVDPAAYQLLLDCIKSNDINVCDQVPSGVES
GGRKLVNPLGGGGHQVDGAD
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mRNA from alignment at F-serratus_M_contig6537:7826..8744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6537.17516.1 ID=mRNA_F-serratus_M_contig6537.17516.1|Name=mRNA_F-serratus_M_contig6537.17516.1|organism=Fucus serratus male|type=mRNA|length=919bp|location=Sequence derived from alignment at F-serratus_M_contig6537:7826..8744+ (Fucus serratus male)
AACGTCCCGAACTTCGTGGGGCAGTTCCACAAGTCACTCCCGCACGACGA GCTCGGACAGGTACGACGACGACGGCGTTATGATATCCCTTTGCATAATA TCTGGCAGTACAAAATAAGACCAACACTGACTTGTACAATAAAACGTCCA CTGTGCAGTATCCTTATTATAAAGTGTCGATTGAGTTGCACGCCTCAAGG GTCAATAGACAGAAAGGGTAGTATCCTTATGGAGTACGTATCGATTAAGT TGCACGCCTCGAGGGCTGTTGTCAAACTGCGGTAGTATAGCCCCCGCAAT ACTCGTCGCCCGAGTGGTCTAGTAAGCAACCTGCACACCTGCTAGTGCGG AAGTCGTGAGTTCAATTCTTACCAAAGTAGGATTTGTGTTCTTTCTCGTA ACGGAAAGCGTGGGAACGTGAGTAAGTTAAATTCAAACATTGGTTGACGA GTTGTAAGAGTGCTGAACTTGCATCGCGATAAAACATTGTAAGGCGTGAA CCGAGGAGAGATGGGAAGATCGTTTGTGACCACAGGCAGGATGGTAATTT GAGGTCCGTTGATATAAGTGTGATTTTTTTTTAAAAAAGGACATATTTGT GCCTACCTTACGACGGCTTTTCTAAGTCATCAGTTCCGCTAAAATGGACA TATTTGTGCCTACCTTACCACGGTTTTTCTGAGTCGTCAGTTCCGCTGCG GTAAAATCATCCAACGCTCACTCATGTTTATCTATTGGCCCGTTGTTTGC ACTTGAAACTGCTCCAGGTGGATCCCGCGGCGTACCAGCTTCTTCTAGAC TGCATCAAGTCAAACGATATCAACGTGTGCGACCAGGTGCCCTCGGGGGT TGAGAGCGGAGGCCGTAAGCTCGTCAACCCCCTCGGAGGCGGTGGACACC AGGTGGACGGCGCCGACAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6537:7826..8744+

>mRNA_F-serratus_M_contig6537.17516.1 ID=mRNA_F-serratus_M_contig6537.17516.1|Name=mRNA_F-serratus_M_contig6537.17516.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig6537:7826..8744+ (Fucus serratus male)
AACGTCCCGAACTTCGTGGGGCAGTTCCACAAGTCACTCCCGCACGACGA
GCTCGGACAGAACGTCCCGAACTTCGTGGGGCAGTTCCACAAGTCACTCC
CGCACGACGAGCTCGGACAGGTGGATCCCGCGGCGTACCAGCTTCTTCTA
GACTGCATCAAGTCAAACGATATCAACGTGTGCGACCAGGTGCCCTCGGG
GGTTGAGAGCGGAGGCCGTAAGCTCGTCAACCCCCTCGGAGGCGGTGGAC
ACCAGGTGGACGGCGCCGACGTGGATCCCGCGGCGTACCAGCTTCTTCTA
GACTGCATCAAGTCAAACGATATCAACGTGTGCGACCAGGTGCCCTCGGG
GGTTGAGAGCGGAGGCCGTAAGCTCGTCAACCCCCTCGGAGGCGGTGGAC
ACCAGGTGGACGGCGCCGAC
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