mRNA_F-serratus_M_contig653.17511.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 143 bits (361), Expect = 6.530e-35 Identity = 106/291 (36.43%), Postives = 152/291 (52.23%), Query Frame = 1
Query: 37 AWALRCDGTSDEQEYTE----DISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKGSPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
AW LR G E+++T DIS + S P +S + XXX P A A +R+ AAKGS NI+N+F G G +P+ RTR G E V SV+F +PAP P+ +Q HC F N QG +H + H AN +G RL + + + + PWE G GRC+ ++ G GA F LQPK+ L + GF+ + + R GA +R Y R +A I++LR L++ +A+++A ++P+QY + +NISKW KDED IV AA
Sbjct: 52 AWDLRSSGVFSEEDWTTQVDGDISGINSARPTLSSEHAVASSASGKRXXXXXXXXXPAARGAPNRGKRQRE---DAAKGSLNIYNSFAIGSG-QPVLRTRA-GVQEYVSSVSFASPAPAPR-VQCPHCPTTFVNAQGLGLHMKTNHSTANVFQGQRLQRMLGDDAKGDVLPWERAGPGRCYHVKI-DGITGAASFVLQPKRVPNIDLESDGFTPAEPR-SARRGAAKRNRYDFRFKAHVIQQLRILEEDRQALWQAEHLSPMQYLETHMKVPRTNISKWVKDEDEIVAFAA 334
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5K6P0_9PHAE (C2H2-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P0_9PHAE) HSP 1 Score: 133 bits (334), Expect = 4.500e-32 Identity = 104/305 (34.10%), Postives = 144/305 (47.21%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKGSP-------NIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L+ G +E+E+ I I S T + P + PP A A+ A +RK + K A+ NI NAF RG G KP+ RTR G +E V + FP PAP + I HC F NEQG +H + +H AN G RL + + + PW G GRCW ++ G GA F LQ K+ L + GF+ D K GA + ++Y R +A + +LR LQ+ +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 53 VAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGI--TSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSG-KPIERTR-GGVIEHVSGINFPPPAPE-RRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKCKLYDFRFKAYVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAA 349
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.690e-31 Identity = 106/305 (34.75%), Postives = 144/305 (47.21%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRK-----SSVMAKAAKG--SPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L+ G +E+E+ I I S T + P + PP A A+ A +RK +AA+G NI NAF RG G KP+ RTR G E V + FP PAP + I HC F NEQG +H + +H AN G RL + + + PW G GRCW ++ G GA F LQ K+ L + GF+ D K GA +R+ Y R +A + +LR LQ+ +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 45 VAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGI--TSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRWKQARDRAAQGVLGGNIINAFARGSG-KPIERTR-GGVTEHVSGINFPPPAPE-RRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAA 341
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.740e-31 Identity = 105/305 (34.43%), Postives = 142/305 (46.56%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKGSP-------NIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L G +E+E+ I I S T + P + PP A A+ A +RK + K A+ NI NAF RG G KP+ RTR G E V +TFP PAP + I HC F NEQG +H + +H AN G RL + + + PW G GRCW ++ G GA F LQ K+ L + GF+ D K GA +R+ Y R + + +LR LQ+ +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 45 VAKERWDAIENAWGLEQTGVFNEEEWITQIDGEAQGI--TSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSG-KPIERTR-GGVTEHVSGITFPPPAPE-RRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKTHVVIQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAA 341
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5JMI5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI5_9PHAE) HSP 1 Score: 125 bits (315), Expect = 6.140e-30 Identity = 81/226 (35.84%), Postives = 111/226 (49.12%), Query Frame = 1
Query: 259 GSPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNG-ESVAMWPWEGVGLGRCWLARLGTG---------PAGATVFQLQPKK-------RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
G+ NI NAF +G G KP+ RTR DGS E + ++ F P P + C F N QG VH + H R R + + G E+ ++ PW G GRC G P G+ F LQP + L+N GFS + P GA RR YT+R++ I++LR L+ + + + MTPL Y G + SNISKW KDED++V+ AA
Sbjct: 35 GTHNIINAFAKGSG-KPVVRTRGDGSTEEITNINFTAPPPPQPTVPCTKCNRRFFNTQGLGVHIKTDHEREAKISLQRWCSTNRKGAEASSLLPWGGTPSGRCCHVAFHHGESRGCGATCPPGSVTFVLQPLRPGAERNNNLVNDGFSQSESPPKKTCGAASRRRYTSREKVGVIQELRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWQKDEDSLVQQAA 259
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5LCI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI6_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.130e-24 Identity = 95/305 (31.15%), Postives = 132/305 (43.28%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKGSP-------NIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L+ G +E+E+ I I S T + P + PP A A+ A +RK + K A+ NI NAF RG G +R R + P P HC F NEQG +H + +H AN RL + + + PWE G GRCW ++ G GA F LQ K+ L + GF+ D K GA +R+ Y R +A + +LR LQ+ +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 45 VAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGI--TSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQGVLGGNIINAFARGSGKPTQWRKRTRTRAPSQPYFVIPCP----------HCPMTFVNEQGLGIHVKTQHSNANMSNRLRLQRMLGKIPKGYVQPWEEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAA 334
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5KEX5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.390e-24 Identity = 101/300 (33.67%), Postives = 132/300 (44.00%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKG--SPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L+ G E+E+ I I TSST + P D A A R +AA+G NI NAF RG G KP+ RTR G E V +TFP PAP + I HC F NEQG +H + +H AN G RL + + + PWE G GRCW ++ G GA F LQ K+ L + GF+ D K GA +R+ Y + +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 14 VAKERWDAIENAWGLKQTGVLKEEEWITKIDGEAQGI-----TSSTRPSF--------LTPQD-----AGGARDRGKQARDRAAQGVLGGNIINAFARGSG-KPIERTR-GGVTEHVSGITFPPPAPE-RRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWEEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDS------------------DLFKEEQLTPLQYLEDRLKVNFSLIVKWAQDEANIVQSAA 271
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5K3E7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E7_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.320e-22 Identity = 71/197 (36.04%), Postives = 98/197 (49.75%), Query Frame = 1
Query: 307 PLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKK----RLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
P + G E V + FP PAP + I HC F NEQG +H + +H AN G RL + + + PW G GRCW ++ G GA F LQ K+ L + GF+ D K GA +R+ Y R +A + +LR LQ+ +F+ ++TPLQY + S I KWA+DE NIV+ AA
Sbjct: 12 PTIERTRGGVTEHVSGINFPPPAPE-RRIPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQPWGEAGPGRCWHVKV-DGATGAASFVLQRKRFRDLDLESDGFT--DRKVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAA 204
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.650e-22 Identity = 73/229 (31.88%), Postives = 107/229 (46.72%), Query Frame = 1
Query: 208 ASRADRRKSSVMAKAA-KGSPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNG--ESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKKRLLNGGFSCDDDKPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
AS +RK A A G+PNI NAF+R G +P+ RTRKDGS E + +TFP P P + C +F N QG VH + H + + G S + + + PW GV GRCW + +G A R Y R++ + +E+LR L+ + + + + +TPL Y S G A +NISKW ++E+ ++EVAA
Sbjct: 1196 ASSGPKRKGRARAAAGIAGTPNIVNAFVRATG-EPMVRTRKDGSTENIMDITFPDPPPLTPKVPCPKCHRLFFNNQGLGVHVKTDH-KDDVRIGVTRWCSTASAVVDPSSTLPWSGVPSGRCWRVKFHHQASGL----------------------------ASPRGSYDPREKLSVVEQLRELESRAQEVRAHFNLTPLGYLSNKTGIAVANISKWQREEEKLLEVAA 1394
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Match: A0A6H5JV77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV77_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.660e-22 Identity = 103/302 (34.11%), Postives = 139/302 (46.03%), Query Frame = 1
Query: 4 VTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPP---VSHTSSTXXXXXXXXXXXSVPPADPPAAVASRADRRKSSVMAKAAKGSPNIWNAFIRGQGGKPLFRTRKDGSVETVQSVTFPTPAPTPKLIQSKHCEAMFQNEQGYSVHRRMRHPRANAHEGTRLLKSMKNGESVAMWPWEGVGLGRCWLARLGTGPAGATVFQLQPKKRLLNGGFSCDDD-----KPDGRSGAKQRRVYTNRKRAAAIEKLRRLQKQPRAIFEAYRMTPLQYASKTVGTAESNISKWAKDEDNIVEVAA 885
V E + AW L+ +G DE+E+ I I +S +S XXXXXXXXXXX +A R +AA NI NAF G G P+ RT G E + ++FP P P + HC F NEQG ++ R +H AN G RL ++ ++ PWE G GRCW + G F LQ +KR L+ D D KP A +RR Y R +A A+ +LR Q +++ + TPLQ+ + SNI KWAK+E +V VAA
Sbjct: 45 VAKERRDAIESAWGLKQNGVFDEEEWVTKIDGETQGITSSIRLSSSSQXXXXXXXXXXXXXXXXXXXXGTARRKAVDRGKQARERAATLGGNICNAFAIGSQG-PIERTC-GGVKELISGISFPPPTPESRR-SCPHCPTTFVNEQGLGIYVRTQHSSANMSNGVRLRCMLRKDVGGSVLPWEAAGPGRCWHVKFDHA-MGTASFVLQ-RKRFLD--LDLDSDGFMGRKPKDTRRAPKRRRYDFRFKAHAVNQLRIFQDNAEDLWKEEQRTPLQFLEGRLKIPYSNIVKWAKNEKELVAVAA 339 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig653.17511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig653.17511.1 >prot_F-serratus_M_contig653.17511.1 ID=prot_F-serratus_M_contig653.17511.1|Name=mRNA_F-serratus_M_contig653.17511.1|organism=Fucus serratus male|type=polypeptide|length=296bp VVTDEVLGLLGQAWALRCDGTSDEQEYTEDISNVISEIPPVSHTSSTAAAback to top mRNA from alignment at F-serratus_M_contig653:52788..54285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig653.17511.1 ID=mRNA_F-serratus_M_contig653.17511.1|Name=mRNA_F-serratus_M_contig653.17511.1|organism=Fucus serratus male|type=mRNA|length=1498bp|location=Sequence derived from alignment at F-serratus_M_contig653:52788..54285- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig653:52788..54285- >mRNA_F-serratus_M_contig653.17511.1 ID=mRNA_F-serratus_M_contig653.17511.1|Name=mRNA_F-serratus_M_contig653.17511.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig653:52788..54285- (Fucus serratus male)back to top |