mRNA_F-serratus_M_contig653.17513.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig653.17513.1
Unique NamemRNA_F-serratus_M_contig653.17513.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig653.17513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig653contigF-serratus_M_contig653:162660..165390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size324
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig653.17513.1prot_F-serratus_M_contig653.17513.1Fucus serratus malepolypeptideF-serratus_M_contig653 162660..165389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932013.1818266-CDS-F-serratus_M_contig653:162659..1627121622932013.1818266-CDS-F-serratus_M_contig653:162659..162712Fucus serratus maleCDSF-serratus_M_contig653 162660..162712 +
1690964102.4350336-CDS-F-serratus_M_contig653:162659..1627121690964102.4350336-CDS-F-serratus_M_contig653:162659..162712Fucus serratus maleCDSF-serratus_M_contig653 162660..162712 +
1622932013.1990962-CDS-F-serratus_M_contig653:163206..1633341622932013.1990962-CDS-F-serratus_M_contig653:163206..163334Fucus serratus maleCDSF-serratus_M_contig653 163207..163334 +
1690964102.4535003-CDS-F-serratus_M_contig653:163206..1633341690964102.4535003-CDS-F-serratus_M_contig653:163206..163334Fucus serratus maleCDSF-serratus_M_contig653 163207..163334 +
1622932013.2166848-CDS-F-serratus_M_contig653:164664..1647721622932013.2166848-CDS-F-serratus_M_contig653:164664..164772Fucus serratus maleCDSF-serratus_M_contig653 164665..164772 +
1690964102.466245-CDS-F-serratus_M_contig653:164664..1647721690964102.466245-CDS-F-serratus_M_contig653:164664..164772Fucus serratus maleCDSF-serratus_M_contig653 164665..164772 +
1622932013.23233-CDS-F-serratus_M_contig653:165357..1653891622932013.23233-CDS-F-serratus_M_contig653:165357..165389Fucus serratus maleCDSF-serratus_M_contig653 165358..165389 +
1690964102.4756055-CDS-F-serratus_M_contig653:165357..1653891690964102.4756055-CDS-F-serratus_M_contig653:165357..165389Fucus serratus maleCDSF-serratus_M_contig653 165358..165389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig653.17513.1

>prot_F-serratus_M_contig653.17513.1 ID=prot_F-serratus_M_contig653.17513.1|Name=mRNA_F-serratus_M_contig653.17513.1|organism=Fucus serratus male|type=polypeptide|length=107bp
SISHSTQPNQTSAFPRTWFGEVTTSSVIMNLLHFLLVAVLALSLNSGNVA
DASSRRLRSKVDTCGDFYCPDGYELKSKPDDITCYDDCDKRDCCDEVNTC
ENFHCPE
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mRNA from alignment at F-serratus_M_contig653:162660..165390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig653.17513.1 ID=mRNA_F-serratus_M_contig653.17513.1|Name=mRNA_F-serratus_M_contig653.17513.1|organism=Fucus serratus male|type=mRNA|length=2731bp|location=Sequence derived from alignment at F-serratus_M_contig653:162660..165390+ (Fucus serratus male)
TCAATCAGCCACTCGACTCAACCCAACCAGACCTCTGCATTCCCACGCAC
GTGGTAAGTGTTATTTTTAGTGTCTTATTTGGTCGTTTAATTTTATTGTG
ACTTTCCTAGAGCTCCAATGCTATATCGTAGTGTTGTTCGTAAACAAACG
TGCCTTGTTTTTAGACGTATTTAGTTGCAGTAGTAATCTAATCGATAGAT
CGCCCCTGATGCACTCGGTCGCAGTGACTTCGTGTACACTCAAGGACCCA
TACACTCGCCTGCCATGATATTATTAAGTAGGCGGCCAAATATAAATAAT
GTATCTTTCTCGGGCATAATGTAGGCAGCAGGTCGATACGCGTCCCCTTT
GTAGTATGGGATGACGGGCGAGCCTTGCAACGAGAGCAGAGCTTATTAAT
ATTAGTATGTGACACCTTCGCTGGCCTAATCTTTCTTTGGGCACATTGCA
AATTTGCAACATTAATAAGATACAATAGTATCAGAAACAATATTTTGCAC
TCATGCTTGATTCCCTTCGAATTCCTCCGCCTATTAATACTTGACAGGTT
CGGAGAGGTAACGACGTCGTCCGTCATCATGAACCTTCTACATTTCCTTC
TGGTGGCTGTGCTTGCCCTTTCTCTTAACTCGGGTAATGTTGCGGATGCC
AGCAGCAGGCGCCTCCGCTCGAAAGGTGAGAGTTTTTGTACGACACGTGT
CGTCTCTTGGGGCCCAAAATAGAGCCGATTACAACTTCTGCTCCTCCTCC
AATGAATACTGGTATATTCGGGATGAAATCGATGCCACCAGGGGGTCTGA
CACGCGAAGCGCAACAAAGTTAAAAGTTAACAAAACTCTCAGCTGCCGGC
CTCAAATCTTGAGAGTTTGTTTTACATTCTTGTGGAGCGATAAACGACGA
CCTAACTTTGCTCAGAGATAGATCCATACAAATATACTCGGCACCGAAAA
GGATATGCTCTTCAGTCTGCAAAAATGACTCCGCTCTTTCAAACTACTGT
TAATAGTTAATAGTGCTCTTTTTTGTTGTTATTTGTTCGGCTGGTTAGTA
GTATTAGGTCGATGCGGCTCGCACGACTGGCTGATTAAAACCTCATTTAC
ATGTGTATACTATGAAGAGAAGACATAGGAACGGCAAGGACAAGGCCGTC
TACGAAAAAAGATAAATTCCATCAAAAGTCTTGAACTGGTAGGCAGCGCG
AAGCCGGCGGATAAAAAACGTCCATCAAGTCCATTGCCGCCTCGTTTCCA
AAACATGATGAGTCGTCGAATGTTGGGGGTTTGTCCAAACATATTTCCCC
ACTCACACGTCTAAAAGTAGTCCAAATACTCTAAAATAGTCCCTCGACTC
AATGCGCTACACCAACACCAAATGTACTGTAGAGCAGTATGACCAAGCAT
GCCGAAGTAAAATCCCCTCATCATGACGTTAACTGGCTGAGAGGAGAGAA
ACATATTTACCTTGTAGTAGCCGTTGAGCGGTTGAAGTTATCTCTTCGGT
AATTTGTTTTCTCAGTTTTTTGTAGATTGTTAGGCCGACTCCTATGCGAG
ATCGAAAACGCAGATCGAAAACGAAAAACGGCGTTTTTCGATCTGGAATT
TTCGATCAGAAGAATAAAGCTATCTTATGCGATCGGATTTTGGCGATTTC
CGAGCAGTGTTTTTCGATCTAGCGTTTTCGATCACTCCATCGCACGGAAA
TGGGGCTGATTTTCGATCAGGGAAATGGTGATCGAAAAATACAGCGCGAC
TAGATACCAAAGGCGTATGTGAGACCCACTCACAAAAACCAATATAAATC
AGGTACAGTTAAAGACATTTCTAATGAGGTCATGAGGCGCTCTGCTCGTC
GTCGCTACAAGGCCACACTAGCTGCCGTGGCGGTGTTCACAGAGATTCGC
CAGCGAGTCCGGGTTGCGGCTACTTTTGGTTGCAGTGCTTGAGCTGTTAG
ACTTGGAAGATTTTAGTTACCAGTCATGTCATGCGGACTTCCGCATGCTG
CGCAGTTGACACCTGCGGAGATTTCTATTGCCCCGACGGATACGAGCTCA
AGAGTAAGCCCGATGACATCACCTGCTACGATGACTGCGACAAACGTGAC
TGTTGCGACGAAGGTCAGTGTCGTGCTGTCGTTGGGGTCCACGGTTCTAT
CATAATATGATCTAGCATTTAGTTTTATTTATTCCCTACGTCGGCTCTTT
GCTGTATAGAAATACTGGCAGGTTTTCGAAAGTTCCGAGGTCTGTACGAA
AAACCTGTTGATTTTTCCGGCAACGCGAACCATTTGTTTGAGTTTTACGG
TCTCATGCCAACAGATGTTTGTTGTTGCTGCTCCTGAAGGGGGAGAAACT
GTGCGTTACGTCGAACTTTTCTTCAAAGGTTTGGTGACTTTAGTTGGGAC
CACGATAACGGCAATTTATGCTGTATGATGTAAATCGAAAGGTGTCATCG
TGCTGACTTCATCGCCAGCCCTCAATAACTCACTAGAGCAGCGCTCTAAC
AACTTTTAAGCCTCGTGGTTATCGAGGCGGCTAGACATAAATATGATGCA
TCCAGATCTATCTATCTATGTCATTTTAGCTTGTTTTGTTCATTTTCTTA
TACCTTTTATCCGATGTGTTCTAAATCCTCGATTTTCACCAAACATTATG
GAATGTGTAAATATAAAAAGTCGTGCAAACTTTCGCATACATACGCAGTT
AATACCTGCGAAAACTTCCACTGCCCCGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig653:162660..165390+

>mRNA_F-serratus_M_contig653.17513.1 ID=mRNA_F-serratus_M_contig653.17513.1|Name=mRNA_F-serratus_M_contig653.17513.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig653:162660..165390+ (Fucus serratus male)
TCAATCAGCCACTCGACTCAACCCAACCAGACCTCTGCATTCCCACGCAC
GTGTCAATCAGCCACTCGACTCAACCCAACCAGACCTCTGCATTCCCACG
CACGTGGTTCGGAGAGGTAACGACGTCGTCCGTCATCATGAACCTTCTAC
ATTTCCTTCTGGTGGCTGTGCTTGCCCTTTCTCTTAACTCGGGTAATGTT
GCGGATGCCAGCAGCAGGCGCCTCCGCTCGAAAGGTTCGGAGAGGTAACG
ACGTCGTCCGTCATCATGAACCTTCTACATTTCCTTCTGGTGGCTGTGCT
TGCCCTTTCTCTTAACTCGGGTAATGTTGCGGATGCCAGCAGCAGGCGCC
TCCGCTCGAAAGTTGACACCTGCGGAGATTTCTATTGCCCCGACGGATAC
GAGCTCAAGAGTAAGCCCGATGACATCACCTGCTACGATGACTGCGACAA
ACGTGACTGTTGCGACGAAGTTGACACCTGCGGAGATTTCTATTGCCCCG
ACGGATACGAGCTCAAGAGTAAGCCCGATGACATCACCTGCTACGATGAC
TGCGACAAACGTGACTGTTGCGACGAAGTTAATACCTGCGAAAACTTCCA
CTGCCCCGAGTTAATACCTGCGAAAACTTCCACTGCCCCGAG
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