mRNA_F-serratus_M_contig6512.17506.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6512.17506.1
Unique Name	mRNA_F-serratus_M_contig6512.17506.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 8.430e-12
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q      T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:   59 GAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 115

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.420e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:   55 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 111

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.310e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYV+L +AVK++LFLRQ+  FM P + +  + +FEDN
Sbjct:   78 GAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDN 134

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.560e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:   85 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 141

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JKN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.230e-11
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1

Query:    1 MLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            M   G ISW SR Q+  A  T+EAEYV+LA+ +K+VLFLRQV  FM P   +  ++VFEDN
Sbjct:  654 MCGGGCISWFSRTQKCVALSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCISVFEDN 714

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BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1

Query:    1 MLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            M  +G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN
Sbjct:  163 MCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDN 223

[Close]

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.310e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:  130 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 186

[Close]

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.360e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL E VK +LFLRQ+  FM P + +  + VFEDN
Sbjct:   90 GAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDN 146

[Close]

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.770e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:  257 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 313

[Close]

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.140e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:   13 GAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDN 183
            GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN
Sbjct:  336 GAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDN 392

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6512.17506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KL35_9PHAE	8.430e-12	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JI51_9PHAE	1.420e-11	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7L4_9PHAE	2.310e-11	50.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUW6_9PHAE	2.560e-11	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKN1_9PHAE	3.230e-11	54.10	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KD60_9PHAE	4.230e-11	52.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWJ4_9PHAE	4.310e-11	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEZ8_9PHAE	5.360e-11	54.39	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPC7_9PHAE	7.770e-11	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG2_9PHAE	8.140e-11	52.63	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6512	contig	F-serratus_M_contig6512:13049..13231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	183
Cds size	183
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932012.5262945-CDS-F-serratus_M_contig6512:13048..13231	1622932012.5262945-CDS-F-serratus_M_contig6512:13048..13231	Fucus serratus male	CDS	F-serratus_M_contig6512 13049..13231 +
1690964102.0721424-CDS-F-serratus_M_contig6512:13048..13231	1690964102.0721424-CDS-F-serratus_M_contig6512:13048..13231	Fucus serratus male	CDS	F-serratus_M_contig6512 13049..13231 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6512.17506.1	prot_F-serratus_M_contig6512.17506.1	Fucus serratus male	polypeptide	F-serratus_M_contig6512 13049..13231 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6512:13049..13231+
coding sequence from alignment at F-serratus_M_contig6512:13049..13231+

protein sequence of mRNA_F-serratus_M_contig6512.17506.1

>prot_F-serratus_M_contig6512.17506.1 ID=prot_F-serratus_M_contig6512.17506.1|Name=mRNA_F-serratus_M_contig6512.17506.1|organism=Fucus serratus male|type=polypeptide|length=61bp
MLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSM
RVGAVNVFEDN

mRNA from alignment at F-serratus_M_contig6512:13049..13231+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6512.17506.1 ID=mRNA_F-serratus_M_contig6512.17506.1|Name=mRNA_F-serratus_M_contig6512.17506.1|organism=Fucus serratus male|type=mRNA|length=183bp|location=Sequence derived from alignment at F-serratus_M_contig6512:13049..13231+ (Fucus serratus male)
ATGTTGGCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAAC
GGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCA
AGGATGTACTGTTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCAATG
AGGGTCGGTGCGGTAAATGTGTTTGAAGATAAT

Coding sequence (CDS) from alignment at F-serratus_M_contig6512:13049..13231+

>mRNA_F-serratus_M_contig6512.17506.1 ID=mRNA_F-serratus_M_contig6512.17506.1|Name=mRNA_F-serratus_M_contig6512.17506.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig6512:13049..13231+ (Fucus serratus male)
ATGTTGGCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAAC
GGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCA
AGGATGTACTGTTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCAATG
AGGGTCGGTGCGGTAAATGTGTTTGAAGATAATATGTTGGCCAAGGGGGC
GATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTCGG
AGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGATGTACTGTTTTTG
AGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTAAA
TGTGTTTGAAGATAAT