mRNA_F-serratus_M_contig6511.17505.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6511.17505.1
Unique NamemRNA_F-serratus_M_contig6511.17505.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.890e-19
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWV+ WK ++ G I+K KARLVA GF Q H VD+ ET++ T  A+S++LLVA+A K D EL  L I+Q F+
Sbjct:   58 NVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHAASIRLLVALACKYDLELLHLDIEQAFV 133
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.190e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F+
Sbjct:  189 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFV 264
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.200e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F+
Sbjct:  461 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFV 536
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.220e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F+
Sbjct:  525 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFV 600
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.220e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F+
Sbjct:  669 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFV 744
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.270e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F+
Sbjct:  875 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFV 950
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.320e-18
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVF 231
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA+A K + EL  L I+Q F
Sbjct:  256 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAF 330
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.660e-18
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H VD+LET++ T  A+S++L+VA A K + EL  L I++ F+
Sbjct:  222 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAFACKYNMELLHLDIEEAFV 297
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.420e-18
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q + VD+LET++ T  A+S++LLVA+A K D EL    I+Q F+
Sbjct:  823 NVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFV 898
[Close]
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.910e-18
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    7 NVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPAASSVKLLVAIAVKNDWELRQLHIKQVFI 234
            NVI +RWVF WK D+ G I+K KARLVA GF Q H +D+L T++ T  A+S++LLVA+A K + EL  L I+Q F+
Sbjct:  210 NVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFV 285
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6511.17505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLE6_9PHAE7.890e-1953.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE9.190e-1955.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE9.200e-1955.26CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE9.220e-1955.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE9.220e-1955.26CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE9.270e-1955.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.320e-1856.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6C0_9PHAE2.660e-1853.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JB16_9PHAE4.420e-1855.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPV1_9PHAE5.910e-1853.95Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6511contigF-serratus_M_contig6511:19862..20095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog3750.XP_008359393.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932012.4324298-CDS-F-serratus_M_contig6511:19861..200951622932012.4324298-CDS-F-serratus_M_contig6511:19861..20095Fucus serratus maleCDSF-serratus_M_contig6511 19862..20095 +
1690964102.0506635-CDS-F-serratus_M_contig6511:19861..200951690964102.0506635-CDS-F-serratus_M_contig6511:19861..20095Fucus serratus maleCDSF-serratus_M_contig6511 19862..20095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6511.17505.1prot_F-serratus_M_contig6511.17505.1Fucus serratus malepolypeptideF-serratus_M_contig6511 19862..20095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6511.17505.1

>prot_F-serratus_M_contig6511.17505.1 ID=prot_F-serratus_M_contig6511.17505.1|Name=mRNA_F-serratus_M_contig6511.17505.1|organism=Fucus serratus male|type=polypeptide|length=78bp
DVNVISSRWVFAWKVDKDGNIIKPKARLVASGFSQAHTVDFLETYAATPA
ASSVKLLVAIAVKNDWELRQLHIKQVFI
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mRNA from alignment at F-serratus_M_contig6511:19862..20095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6511.17505.1 ID=mRNA_F-serratus_M_contig6511.17505.1|Name=mRNA_F-serratus_M_contig6511.17505.1|organism=Fucus serratus male|type=mRNA|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig6511:19862..20095+ (Fucus serratus male)
GATGTCAATGTCATAAGTTCTCGATGGGTGTTTGCCTGGAAGGTAGACAA
AGATGGCAACATCATAAAACCAAAAGCGAGGCTAGTTGCAAGTGGCTTTA
GTCAGGCGCATACCGTAGATTTCTTAGAAACCTATGCTGCTACTCCGGCT
GCGTCCAGTGTTAAACTATTGGTAGCTATTGCTGTAAAAAATGACTGGGA
ATTACGACAGCTACATATAAAACAAGTATTCATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6511:19862..20095+

>mRNA_F-serratus_M_contig6511.17505.1 ID=mRNA_F-serratus_M_contig6511.17505.1|Name=mRNA_F-serratus_M_contig6511.17505.1|organism=Fucus serratus male|type=CDS|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig6511:19862..20095+ (Fucus serratus male)
GATGTCAATGTCATAAGTTCTCGATGGGTGTTTGCCTGGAAGGTAGACAA
AGATGGCAACATCATAAAACCAAAAGCGAGGCTAGTTGCAAGTGGCTTTA
GTCAGGCGCATACCGTAGATTTCTTAGAAACCTATGCTGCTACTCCGGCT
GCGTCCAGTGTTAAACTATTGGTAGCTATTGCTGTAAAAAATGACTGGGA
ATTACGACAGCTACATATAAAACAAGTATTCATTGATGTCAATGTCATAA
GTTCTCGATGGGTGTTTGCCTGGAAGGTAGACAAAGATGGCAACATCATA
AAACCAAAAGCGAGGCTAGTTGCAAGTGGCTTTAGTCAGGCGCATACCGT
AGATTTCTTAGAAACCTATGCTGCTACTCCGGCTGCGTCCAGTGTTAAAC
TATTGGTAGCTATTGCTGTAAAAAATGACTGGGAATTACGACAGCTACAT
ATAAAACAAGTATTCATT
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