mRNA_F-serratus_M_contig650.17488.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig650.17488.1
Unique NamemRNA_F-serratus_M_contig650.17488.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig650.17488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig650contigF-serratus_M_contig650:59914..60639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size728
Cds size726
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932010.5768788-CDS-F-serratus_M_contig650:59913..606391622932010.5768788-CDS-F-serratus_M_contig650:59913..60639Fucus serratus maleCDSF-serratus_M_contig650 59914..60639 +
1690964101.2748024-CDS-F-serratus_M_contig650:59913..606391690964101.2748024-CDS-F-serratus_M_contig650:59913..60639Fucus serratus maleCDSF-serratus_M_contig650 59914..60639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig650.17488.1prot_F-serratus_M_contig650.17488.1Fucus serratus malepolypeptideF-serratus_M_contig650 59914..60639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig650.17488.1

>prot_F-serratus_M_contig650.17488.1 ID=prot_F-serratus_M_contig650.17488.1|Name=mRNA_F-serratus_M_contig650.17488.1|organism=Fucus serratus male|type=polypeptide|length=242bp
MGVFVSKVWAWLIADDSSEQQRPQSRVAAGTPTSETGRRAMDSSLKEATG
GTSAVSCERRAAKGDTNAVEVKTGGGGWKEWLTSGDSGERKQEGEGSEKR
SIVEKKRTVKRSIDPSEVSSERMQSKASDGEVKFTGFRKARRFHVSKTLG
QEGVVSGGSERFVSTTGKGKGLSAASREGKERESALADADAKLVAEDEQR
NVLGGLFGSKRWKSWASSAATAASCKFGRIDHIPRSKGSCKN
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mRNA from alignment at F-serratus_M_contig650:59914..60639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig650.17488.1 ID=mRNA_F-serratus_M_contig650.17488.1|Name=mRNA_F-serratus_M_contig650.17488.1|organism=Fucus serratus male|type=mRNA|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig650:59914..60639+ (Fucus serratus male)
ATGGGGGTTTTCGTCAGTAAAGTGTGGGCCTGGTTGATAGCGGACGATTC
TTCCGAACAGCAACGCCCACAGAGCCGCGTCGCTGCTGGCACGCCCACGT
CCGAGACTGGAAGACGCGCGATGGATTCTAGCTTGAAGGAAGCCACTGGA
GGAACTTCCGCCGTTTCGTGCGAAAGGCGTGCGGCGAAAGGCGACACAAA
CGCCGTCGAAGTTAAGACCGGAGGTGGCGGGTGGAAGGAGTGGCTGACGT
CCGGCGACTCTGGAGAGAGAAAGCAGGAGGGCGAGGGATCGGAGAAACGG
TCTATCGTGGAAAAAAAACGAACGGTGAAGCGAAGTATAGACCCGTCGGA
AGTTTCATCCGAAAGGATGCAATCAAAGGCGAGCGACGGTGAGGTGAAGT
TCACGGGTTTCAGGAAAGCGAGGCGTTTCCACGTCTCTAAGACTTTGGGA
CAAGAAGGAGTGGTCAGTGGTGGCAGCGAACGCTTCGTGTCCACAACAGG
AAAAGGTAAGGGACTGTCTGCCGCGTCAAGAGAGGGGAAAGAAAGAGAGA
GCGCGCTCGCGGACGCTGACGCCAAGCTTGTTGCCGAAGACGAACAGCGG
AATGTGCTCGGTGGCCTGTTCGGTAGTAAGCGATGGAAAAGCTGGGCGTC
GTCAGCAGCGACGGCGGCTTCTTGCAAATTCGGGAGGATAGATCATATCC
CGAGGTCTAAAGGCAGCTGCAAAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig650:59914..60639+

>mRNA_F-serratus_M_contig650.17488.1 ID=mRNA_F-serratus_M_contig650.17488.1|Name=mRNA_F-serratus_M_contig650.17488.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig650:59914..60639+ (Fucus serratus male)
ATGGGGGTTTTCGTCAGTAAAGTGTGGGCCTGGTTGATAGCGGACGATTC
TTCCGAACAGCAACGCCCACAGAGCCGCGTCGCTGCTGGCACGCCCACGT
CCGAGACTGGAAGACGCGCGATGGATTCTAGCTTGAAGGAAGCCACTGGA
GGAACTTCCGCCGTTTCGTGCGAAAGGCGTGCGGCGAAAGGCGACACAAA
CGCCGTCGAAGTTAAGACCGGAGGTGGCGGGTGGAAGGAGTGGCTGACGT
CCGGCGACTCTGGAGAGAGAAAGCAGGAGGGCGAGGGATCGGAGAAACGG
TCTATCGTGGAAAAAAAACGAACGGTGAAGCGAAGTATAGACCCGTCGGA
AGTTTCATCCGAAAGGATGCAATCAAAGGCGAGCGACGGTGAGGTGAAGT
TCACGGGTTTCAGGAAAGCGAGGCGTTTCCACGTCTCTAAGACTTTGGGA
CAAGAAGGAGTGGTCAGTGGTGGCAGCGAACGCTTCGTGTCCACAACAGG
AAAAGGTAAGGGACTGTCTGCCGCGTCAAGAGAGGGGAAAGAAAGAGAGA
GCGCGCTCGCGGACGCTGACGCCAAGCTTGTTGCCGAAGACGAACAGCGG
AATGTGCTCGGTGGCCTGTTCGGTAGTAAGCGATGGAAAAGCTGGGCGTC
GTCAGCAGCGACGGCGGCTTCTTGCAAATTCGGGAGGATAGATCATATCC
CGAGGTCTAAAGGCAGCTGCAAAAACATGGGGGTTTTCGTCAGTAAAGTG
TGGGCCTGGTTGATAGCGGACGATTCTTCCGAACAGCAACGCCCACAGAG
CCGCGTCGCTGCTGGCACGCCCACGTCCGAGACTGGAAGACGCGCGATGG
ATTCTAGCTTGAAGGAAGCCACTGGAGGAACTTCCGCCGTTTCGTGCGAA
AGGCGTGCGGCGAAAGGCGACACAAACGCCGTCGAAGTTAAGACCGGAGG
TGGCGGGTGGAAGGAGTGGCTGACGTCCGGCGACTCTGGAGAGAGAAAGC
AGGAGGGCGAGGGATCGGAGAAACGGTCTATCGTGGAAAAAAAACGAACG
GTGAAGCGAAGTATAGACCCGTCGGAAGTTTCATCCGAAAGGATGCAATC
AAAGGCGAGCGACGGTGAGGTGAAGTTCACGGGTTTCAGGAAAGCGAGGC
GTTTCCACGTCTCTAAGACTTTGGGACAAGAAGGAGTGGTCAGTGGTGGC
AGCGAACGCTTCGTGTCCACAACAGGAAAAGGTAAGGGACTGTCTGCCGC
GTCAAGAGAGGGGAAAGAAAGAGAGAGCGCGCTCGCGGACGCTGACGCCA
AGCTTGTTGCCGAAGACGAACAGCGGAATGTGCTCGGTGGCCTGTTCGGT
AGTAAGCGATGGAAAAGCTGGGCGTCGTCAGCAGCGACGGCGGCTTCTTG
CAAATTCGGGAGGATAGATCATATCCCGAGGTCTAAAGGCAGCTGCAAAA
AC
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