mRNA_F-serratus_M_contig650.17496.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig650.17496.1
Unique NamemRNA_F-serratus_M_contig650.17496.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig650.17496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig650contigF-serratus_M_contig650:400171..400483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size286
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig650.17496.1prot_F-serratus_M_contig650.17496.1Fucus serratus malepolypeptideF-serratus_M_contig650 400283..400456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932010.4673429-UTR-F-serratus_M_contig650:400170..4002821622932010.4673429-UTR-F-serratus_M_contig650:400170..400282Fucus serratus maleUTRF-serratus_M_contig650 400171..400282 -
1690964101.2287579-UTR-F-serratus_M_contig650:400170..4002821690964101.2287579-UTR-F-serratus_M_contig650:400170..400282Fucus serratus maleUTRF-serratus_M_contig650 400171..400282 -
1622932010.5260227-UTR-F-serratus_M_contig650:400456..4004831622932010.5260227-UTR-F-serratus_M_contig650:400456..400483Fucus serratus maleUTRF-serratus_M_contig650 400457..400483 -
1690964101.2662084-UTR-F-serratus_M_contig650:400456..4004831690964101.2662084-UTR-F-serratus_M_contig650:400456..400483Fucus serratus maleUTRF-serratus_M_contig650 400457..400483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932010.4867177-CDS-F-serratus_M_contig650:400282..4003491622932010.4867177-CDS-F-serratus_M_contig650:400282..400349Fucus serratus maleCDSF-serratus_M_contig650 400283..400349 -
1690964101.240163-CDS-F-serratus_M_contig650:400282..4003491690964101.240163-CDS-F-serratus_M_contig650:400282..400349Fucus serratus maleCDSF-serratus_M_contig650 400283..400349 -
1622932010.5093873-CDS-F-serratus_M_contig650:400376..4004561622932010.5093873-CDS-F-serratus_M_contig650:400376..400456Fucus serratus maleCDSF-serratus_M_contig650 400377..400456 -
1690964101.2487314-CDS-F-serratus_M_contig650:400376..4004561690964101.2487314-CDS-F-serratus_M_contig650:400376..400456Fucus serratus maleCDSF-serratus_M_contig650 400377..400456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig650.17496.1

>prot_F-serratus_M_contig650.17496.1 ID=prot_F-serratus_M_contig650.17496.1|Name=mRNA_F-serratus_M_contig650.17496.1|organism=Fucus serratus male|type=polypeptide|length=49bp
MQYLATVRKTGRTQRSMEVGRLRNSCADDYYGDISVRPNKLSVRFLSN*
back to top

mRNA from alignment at F-serratus_M_contig650:400171..400483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig650.17496.1 ID=mRNA_F-serratus_M_contig650.17496.1|Name=mRNA_F-serratus_M_contig650.17496.1|organism=Fucus serratus male|type=mRNA|length=313bp|location=Sequence derived from alignment at F-serratus_M_contig650:400171..400483- (Fucus serratus male)
ACACTAGCCCACCCTGTGAGGTCCGGGATGCAGTACTTAGCAACAGTGCG
AAAGACCGGCCGAACACAACGTTCAATGGAAGTTGGCAGGTTGCGCAATA
GCTGCGCGTCCATTGACCAATGTTCAATAAATAGCGATGATTATTACGGA
GACATATCTGTACGACCAAACAAGTTGAGCGTTAGATTTCTCTCAAACTA
AACATATCGCATTTGACTCAAACTACAAACAGCAGTGAGGGTTCAAACAA
CTGATTTCCTGCGATGGTCGAACGTAGTGACGTACTTTTGTATCTACTGC
ATTAAACACGACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig650:400171..400483-

>mRNA_F-serratus_M_contig650.17496.1 ID=mRNA_F-serratus_M_contig650.17496.1|Name=mRNA_F-serratus_M_contig650.17496.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig650:400171..400483- (Fucus serratus male)
ATGCAGTACTTAGCAACAGTGCGAAAGACCGGCCGAACACAACGTTCAAT
GGAAGTTGGCAGGTTGCGCAATAGCTGCGCATGCAGTACTTAGCAACAGT
GCGAAAGACCGGCCGAACACAACGTTCAATGGAAGTTGGCAGGTTGCGCA
ATAGCTGCGCCGATGATTATTACGGAGACATATCTGTACGACCAAACAAG
TTGAGCGTTAGATTTCTCTCAAACTAACGATGATTATTACGGAGACATAT
CTGTACGACCAAACAAGTTGAGCGTTAGATTTCTCTCAAACTAA
back to top