mRNA_F-serratus_M_contig65.17472.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17472.1
Unique NamemRNA_F-serratus_M_contig65.17472.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17472.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.290e-58
Identity = 113/208 (54.33%), Postives = 137/208 (65.87%), Query Frame = 3 
Query:  129 NGGQAVWPGYGRIEDRSCAGQFSQVFIKRLDYETGYWYYENQTTGECHWDRPLEGVVPFQPAPPRLEDLIEDEAREHRQRLEREMRWKHTLTRRYIFGKQVLNGTGRRELDENHRVQALWDEAEEHAVRKGGRLSIAWQQLPVVSEEHLFGFFARHG-MRLTTLHLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRELPDGMCALTNL 749
            NG ++   GY   +D + A    Q F K +D ETGYW+YEN  TGE HWDRPLEGV P +P  PR ++ + D+AR  RQR ERE R K    RR  F K +L      E+ E  RVQ LWDEAE+HA RK G  S+AW+Q+P VSE H+FGF  R+G  ++  L LVGLGL EVP AIGQ+L SLKSLS SSN L E+PDG+C LT L
Sbjct:   10 NGHESGNSGY---DDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTAL 214
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMJ1_ECTSI1.290e-5854.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:416264..419705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue8.6e-53
Seed eggNOG ortholog2880.D8LMJ1
Preferred nameLRCH1
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Exons6
Model size862
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17472.1prot_F-serratus_M_contig65.17472.1Fucus serratus malepolypeptideF-serratus_M_contig65 416320..419589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932006.3954465-UTR-F-serratus_M_contig65:416263..4163191622932006.3954465-UTR-F-serratus_M_contig65:416263..416319Fucus serratus maleUTRF-serratus_M_contig65 416264..416319 -
1690964098.9990857-UTR-F-serratus_M_contig65:416263..4163191690964098.9990857-UTR-F-serratus_M_contig65:416263..416319Fucus serratus maleUTRF-serratus_M_contig65 416264..416319 -
1622932006.5836086-UTR-F-serratus_M_contig65:419589..4197051622932006.5836086-UTR-F-serratus_M_contig65:419589..419705Fucus serratus maleUTRF-serratus_M_contig65 419590..419705 -
1690964099.0887234-UTR-F-serratus_M_contig65:419589..4197051690964099.0887234-UTR-F-serratus_M_contig65:419589..419705Fucus serratus maleUTRF-serratus_M_contig65 419590..419705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932006.4159634-CDS-F-serratus_M_contig65:416319..4164251622932006.4159634-CDS-F-serratus_M_contig65:416319..416425Fucus serratus maleCDSF-serratus_M_contig65 416320..416425 -
1690964099.0163105-CDS-F-serratus_M_contig65:416319..4164251690964099.0163105-CDS-F-serratus_M_contig65:416319..416425Fucus serratus maleCDSF-serratus_M_contig65 416320..416425 -
1622932006.4330332-CDS-F-serratus_M_contig65:416635..4167301622932006.4330332-CDS-F-serratus_M_contig65:416635..416730Fucus serratus maleCDSF-serratus_M_contig65 416636..416730 -
1690964099.0267236-CDS-F-serratus_M_contig65:416635..4167301690964099.0267236-CDS-F-serratus_M_contig65:416635..416730Fucus serratus maleCDSF-serratus_M_contig65 416636..416730 -
1622932006.4956326-CDS-F-serratus_M_contig65:417034..4172111622932006.4956326-CDS-F-serratus_M_contig65:417034..417211Fucus serratus maleCDSF-serratus_M_contig65 417035..417211 -
1690964099.035767-CDS-F-serratus_M_contig65:417034..4172111690964099.035767-CDS-F-serratus_M_contig65:417034..417211Fucus serratus maleCDSF-serratus_M_contig65 417035..417211 -
1622932006.5272284-CDS-F-serratus_M_contig65:418341..4184201622932006.5272284-CDS-F-serratus_M_contig65:418341..418420Fucus serratus maleCDSF-serratus_M_contig65 418342..418420 -
1690964099.0540025-CDS-F-serratus_M_contig65:418341..4184201690964099.0540025-CDS-F-serratus_M_contig65:418341..418420Fucus serratus maleCDSF-serratus_M_contig65 418342..418420 -
1622932006.547313-CDS-F-serratus_M_contig65:418661..4188101622932006.547313-CDS-F-serratus_M_contig65:418661..418810Fucus serratus maleCDSF-serratus_M_contig65 418662..418810 -
1690964099.067574-CDS-F-serratus_M_contig65:418661..4188101690964099.067574-CDS-F-serratus_M_contig65:418661..418810Fucus serratus maleCDSF-serratus_M_contig65 418662..418810 -
1622932006.568086-CDS-F-serratus_M_contig65:419505..4195891622932006.568086-CDS-F-serratus_M_contig65:419505..419589Fucus serratus maleCDSF-serratus_M_contig65 419506..419589 -
1690964099.080307-CDS-F-serratus_M_contig65:419505..4195891690964099.080307-CDS-F-serratus_M_contig65:419505..419589Fucus serratus maleCDSF-serratus_M_contig65 419506..419589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17472.1

>prot_F-serratus_M_contig65.17472.1 ID=prot_F-serratus_M_contig65.17472.1|Name=mRNA_F-serratus_M_contig65.17472.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MTRDNGGQAVWPGYGRIEDRSCAGQFSQVFIKRLDYETGYWYYENQTTGE
CHWDRPLEGVVPFQPAPPRLEDLIEDEAREHRQRLEREMRWKHTLTRRYI
FGKQVLNGTGRRELDENHRVQALWDEAEEHAVRKGGRLSIAWQQLPVVSE
EHLFGFFARHGMRLTTLHLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRE
LPDGMCALTNLTHLNLVRNRLVTLPDRCE*
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mRNA from alignment at F-serratus_M_contig65:416264..419705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17472.1 ID=mRNA_F-serratus_M_contig65.17472.1|Name=mRNA_F-serratus_M_contig65.17472.1|organism=Fucus serratus male|type=mRNA|length=3442bp|location=Sequence derived from alignment at F-serratus_M_contig65:416264..419705- (Fucus serratus male)
TGTACTCACAGCAGAGAGCGGTATTATGGATAGGAGCTAGAAATCATTGA
AAAAAAATTAACGAGTCGTTTTAAAGTCGTACCTGTTACATACTTCGTAT
TATATATATCGACAATATGACAAGAGACAATGGAGGTCAGGCGGTTTGGC
CAGGCTATGGCAGGATCGAAGATCGATCCTGTGCAGGACAGTTTTCTCAG
GTGTTATATACTCACTCACCTGAATAAGAGCTCTGCAACTGATGGCATGA
TTTAAGCCCATCACCACCTACAAAAAAAACTGTGTGTACTGTTCAATCTT
GTGCGTTGTAAATTGTGCCGGACAAGATCGATTGGCAGCGCAGTTTACGT
TGAGGATGGTGACATGCGTACATCTTGAAAGTCTCCAACAGCTTTCATTA
AACATCCTTTGCCACGCGTGCACAACATGCCGTAGTGGTGCTTCTGTCAT
ATAAGTCGTACTGCAACTCGCAACTGTATGAAGCGCTCATGATTCCCATG
GCTTTCTTCAAAAAGATGGAAGCGCGTTCCAAATTTGTGACCGCTGGGGG
CAGGCATCTACTTGAAAGGCACCAAGCGGCTGCGACTAATTTATGAGTGT
AGACGAGGCAGGCTGTCAGCGACTGGTTGCACTTATGTTATGAGTTATGT
GGCACCAGGTTGCCCAACGCGATTTACTGGACCATTCCTCCGTTTGAGCT
ACTACACTTGTTTCACTTGACTCGTTTTATACCGCAAATAATGTGTTGTA
CTGTAGGCATTTAGGGGCCAAGGTTATACGGTATCTAAATGACGCTGCAC
GTTGGGAACAAGTCTCGTTCTTTTGCCTTTTCCGCAGGCTGGCAGCATAT
GACTTACTGCCATTATCTTTACAATGTCCTCGATCGTCGCCGCAGGTTTT
TATAAAACGTTTAGACTACGAAACGGGGTATTGGTACTACGAAAATCAAA
CAACGGGGGAATGTCACTGGGATCGGCCTCTGGAGGGAGTGGTACCCTTC
CAACCAGCACCTCCGCGCCTGGAAGACCTCATTGAAGACGAGGCGTGAGT
GAATTTATTATCAACATCGGGTGGGATGGAGATGTGGTGGGGGGCTATGG
TGGTTGAGGTCGTTTGGATGTTACGACTGATTTGCGCGGCAATCAACTCA
ATCCCGCACTTGGTCTCGGTGATATTGTTGATGTCATCTATTAATAGTGG
TATGGGCCCTCTCCTCTTTACGTATATGCCAGTGAGGATTTAACGGTTCT
CGTTCGTACACCTTCCTGGCCTACTTCCTTGACAGCCGAGAACATCGACA
ACGGTTAGAGCGGGAAATGAGATGGAAGCATACGCTCACGCGTCGGTATA
TTTTTGGGAAGCAGGCGAGATTCGCGGAGGGAACACAGGATAATATGTTC
ACACGTGTTGCAGTAGTCCTGCGCGCATGGCCTTGTTTCAAGAGAACTTA
TGACCGACTTTTTCATCGATCTTGACTCTATTATCGCAAAGTAGGCAAAA
CCATCTTGTGTAGTCTTAAGTTTTCCAAATGTCGATTCGCGGTTGGAGAC
GAAACGAACTCACCTCTACCGTAGTTCGGTTAGCCAATCGCACTTACTGA
AACATCCATGTACAACCATGATAATCCTTTCGAAACTTGCTGCACATCTA
CACGATTCAGCAGCTGGATGCAAGCAATATTCCGGGGAGCCCTCAACAGG
CCTCGTCAACGATGCCGATTGTCGCCTCTCTTGCATCCGTTTCGATTAAA
GATATGTCGATGTAATTCCGTCGAGGCTCTTTAACCTGTCGGGAATGAGG
CGATTGTTCCGTGTTAGAAGATGCTTAGCACAAAAGATTGGGACAGTGGG
TGCTAACCACACAATGCTATCAGGAAGAGCTTACGGTGTATTGGAGGGAT
TGCTGTGGTGTACAAGCAGTGTGCCCTGGAAGAACTGCTTATGGCAGATG
TTTTCGGTTGGCTGTAAAAGGGAGTAACCATAGGGGCGCGGCCATCCTTC
GTCTCTGTTATGACTCACGTATACCACCGTAGTATGGTACAATCAATAAA
CATCCAGCTACTCTTCAAACCACTTTCATCCTATTGGCTATCTACTTCCC
GATACCCGACATTTCTATTAATAAAAGCATCAACCATCTTTTTACATTCT
GCGTTTTACTTGAAATTACGGCAAGTGATATATTTCCGACAAGATATGCA
TATCATTCCACACTCGAGTCTCGTGTCTACTTGAGAGTCGCCCAACGAAC
GGGAGAGGGAATTCGACGGTTTCGTCCCCGTGGGTGTCACCAAAGCAGTC
CCTTTCGGGGACGAGACTACGAGATCCCTCACATGGTTGCCAAGCTTGCC
ACGAATTCAACTCGTTTATCAAGAAGATTGATGAAGCGTGTCTCCGGGAG
GAGCTTTTTCTTGCCGTCCTTTCCCCAAACGGGGAGAAATTTAGGACCCC
CCCCCCCCCCCCCCCCCCATTCGTTAAACGGCTCTCAAATGCAGGTCTTA
AACGGGACAGGAAGGCGCGAACTCGATGAAAACCATAGGGTACAGGCTCT
GTGGGATGAGGCTGAAGAACACGCTGTGAGGAAAGGTGGTCGGTTGTCTA
TAGCTTGGCAGCAGCTTCCCGTCGTATCGGAGGAGCACCTCTTTGGATTT
TTTGCGAGACATGGAATGAGGGTGAGAATCCTCATGGCAATGAATGTGCG
CTGGTTTTTTCGCGGGACACAGAACGTTAATCCTGTGTGTGTTAATCAAA
TTTGCTTTGACCATGTCCGACCTCTAGTAGATGTGCAAGTAAATGGTTAC
AAGTCTTTAGCAACTCGCACACACAAACACGTCTTTTTTAAACCACGAGG
TCGGTAAACAGACTTTCTGCGTCGGGAAATATTGAAAACCTGCTGGGCGT
AGTAAAGTTAGAACGCCGACAAGTTCTACGCGCCAACGGCGCAACGATCA
CCTCGTCTACTCCGTTCCATACCAGCTCACTACCCTTCACTTGGTCGGCC
TGGGCCTTGCTGAAGTTCCCAGCGCTATTGGCCAGCACCTGTGGTCCCTC
AAGTCTCTGTCGTTTTCTAGGTGCAGTTCAAATATATCCACTTATTGCGC
GAGATGCTGAGCGCTAGGCCAAGGATCGGTCATTAGTTGGCATCGTACAG
CTGAGTCCTCCTATACGCGTTGGACAAAGCAATTTCCAAATCGATTGCTC
TCCGAAACTTTCTACCTTTCTGCATAGTAAGCGACTCGAACGGTTACCTC
CCCGTATCCGACCTGGCATGATTCTCCCAGCAATGTCTTGCGGGAACTTC
CGGACGGAATGTGCGCACTCACGAATCTGACGCATCTCAATCTGGTCAGA
AACAGGCTCGTTACTTTGCCAGACAGGTGCGAATAAGTGCATCCCATTTT
GTCGCTTTGTCTGGTCTTTGATGAACGAACGTGACTAAGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:416264..419705-

>mRNA_F-serratus_M_contig65.17472.1 ID=mRNA_F-serratus_M_contig65.17472.1|Name=mRNA_F-serratus_M_contig65.17472.1|organism=Fucus serratus male|type=CDS|length=1380bp|location=Sequence derived from alignment at F-serratus_M_contig65:416264..419705- (Fucus serratus male)
ATGACAAGAGACAATGGAGGTCAGGCGGTTTGGCCAGGCTATGGCAGGAT
CGAAGATCGATCCTGTGCAGGACAGTTTTCTCAGATGACAAGAGACAATG
GAGGTCAGGCGGTTTGGCCAGGCTATGGCAGGATCGAAGATCGATCCTGT
GCAGGACAGTTTTCTCAGGTTTTTATAAAACGTTTAGACTACGAAACGGG
GTATTGGTACTACGAAAATCAAACAACGGGGGAATGTCACTGGGATCGGC
CTCTGGAGGGAGTGGTACCCTTCCAACCAGCACCTCCGCGCCTGGAAGAC
CTCATTGAAGACGAGGCGTTTTTATAAAACGTTTAGACTACGAAACGGGG
TATTGGTACTACGAAAATCAAACAACGGGGGAATGTCACTGGGATCGGCC
TCTGGAGGGAGTGGTACCCTTCCAACCAGCACCTCCGCGCCTGGAAGACC
TCATTGAAGACGAGGCCCGAGAACATCGACAACGGTTAGAGCGGGAAATG
AGATGGAAGCATACGCTCACGCGTCGGTATATTTTTGGGAAGCAGCCGAG
AACATCGACAACGGTTAGAGCGGGAAATGAGATGGAAGCATACGCTCACG
CGTCGGTATATTTTTGGGAAGCAGGTCTTAAACGGGACAGGAAGGCGCGA
ACTCGATGAAAACCATAGGGTACAGGCTCTGTGGGATGAGGCTGAAGAAC
ACGCTGTGAGGAAAGGTGGTCGGTTGTCTATAGCTTGGCAGCAGCTTCCC
GTCGTATCGGAGGAGCACCTCTTTGGATTTTTTGCGAGACATGGAATGAG
GGTCTTAAACGGGACAGGAAGGCGCGAACTCGATGAAAACCATAGGGTAC
AGGCTCTGTGGGATGAGGCTGAAGAACACGCTGTGAGGAAAGGTGGTCGG
TTGTCTATAGCTTGGCAGCAGCTTCCCGTCGTATCGGAGGAGCACCTCTT
TGGATTTTTTGCGAGACATGGAATGAGGCTCACTACCCTTCACTTGGTCG
GCCTGGGCCTTGCTGAAGTTCCCAGCGCTATTGGCCAGCACCTGTGGTCC
CTCAAGTCTCTGTCGTTTTCTAGCTCACTACCCTTCACTTGGTCGGCCTG
GGCCTTGCTGAAGTTCCCAGCGCTATTGGCCAGCACCTGTGGTCCCTCAA
GTCTCTGTCGTTTTCTAGCAATGTCTTGCGGGAACTTCCGGACGGAATGT
GCGCACTCACGAATCTGACGCATCTCAATCTGGTCAGAAACAGGCTCGTT
ACTTTGCCAGACAGGTGCGAATAACAATGTCTTGCGGGAACTTCCGGACG
GAATGTGCGCACTCACGAATCTGACGCATCTCAATCTGGTCAGAAACAGG
CTCGTTACTTTGCCAGACAGGTGCGAATAA
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