mRNA_F-serratus_M_contig65.17471.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17471.1
Unique NamemRNA_F-serratus_M_contig65.17471.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17471.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 6.790e-44
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 2 
Query:  203 MKCRVFNVNNNRLAGLPHCLKDMPRLTVLSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDMVYPPSEIVREGCECVRRWCLRRLHDRVQARQHTIVVAVQDILRQIATRGLGSPTFFEPDVHIGDNKEDLH-YALIYERFWDTMLPALER 781
            MKCR  NV+NN+LAGLPHCLKDMPRLT +SAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NDMVYPP E++ +GC+ VR WC RR+HDRV ARQHTIV+AVQDIL+QI  RGLG P FFEPDV +G N+   H YAL+YERFWDTMLPALER
Sbjct:  280 MKCRWLNVSNNKLAGLPHCLKDMPRLTKISAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNDMVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER 473
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BLAST of mRNA_F-serratus_M_contig65.17471.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.980e-34
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 2 
Query:  509 NDMVYPPSEIVREGCECVRRWCLRRLHDRVQARQHTIVVAVQDILRQIATRGLGSPTFFEPDVHIGDNKEDLH-YALIYERFWDTMLPALER 781
            NDMVYPP EI+ +GC+ VR WC RR+HDRV ARQHTIV+ VQDIL+QI  RGLG P FFEPDV +G N+   H YAL+YERFWDTMLPALER
Sbjct:   81 NDMVYPPKEIILQGCDRVRAWCHRRMHDRVSARQHTIVMTVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALER 172
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BLAST of mRNA_F-serratus_M_contig65.17471.1 vs. uniprot
Match: A0A482SUE5_9ARCH (Leucine-rich repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUE5_9ARCH)

HSP 1 Score: 72.8 bits (177), Expect = 5.890e-11
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  524 PPSEIVREGCECVRRWCLRRLHDRVQARQHTIVVAVQDILRQIATRGLGSPTFFEPDVHIGDNKEDLHYALIYERFWDTMLPALERV 784
            PPSEI+ EG + V ++C        Q R   I++  Q++L+QIA RG+  P FFEP+  IG N EDL   L    FW+ ++P + ++
Sbjct:  282 PPSEILIEGAKRVVKFCFDTYMSDKQGRMRHIILTSQNVLQQIADRGVYDPAFFEPEARIGSNAEDLWVGLQLTHFWNDLIPRMNQI 368
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMJ1_ECTSI6.790e-4482.99Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KAI0_9PHAE3.980e-3471.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SUE5_9ARCH5.890e-1139.08Leucine-rich repeat domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:413143..416383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D8LMJ1
Preferred nameLRCH1
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Exons8
Model size838
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17471.1prot_F-serratus_M_contig65.17471.1Fucus serratus malepolypeptideF-serratus_M_contig65 413182..415518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932005.9713402-UTR-F-serratus_M_contig65:413142..4131811622932005.9713402-UTR-F-serratus_M_contig65:413142..413181Fucus serratus maleUTRF-serratus_M_contig65 413143..413181 -
1690964098.8763745-UTR-F-serratus_M_contig65:413142..4131811690964098.8763745-UTR-F-serratus_M_contig65:413142..413181Fucus serratus maleUTRF-serratus_M_contig65 413143..413181 -
1622932006.0923383-UTR-F-serratus_M_contig65:415518..4156181622932006.0923383-UTR-F-serratus_M_contig65:415518..415618Fucus serratus maleUTRF-serratus_M_contig65 415519..415618 -
1690964098.9612365-UTR-F-serratus_M_contig65:415518..4156181690964098.9612365-UTR-F-serratus_M_contig65:415518..415618Fucus serratus maleUTRF-serratus_M_contig65 415519..415618 -
1622932006.1119766-UTR-F-serratus_M_contig65:416038..4160861622932006.1119766-UTR-F-serratus_M_contig65:416038..416086Fucus serratus maleUTRF-serratus_M_contig65 416039..416086 -
1690964098.9745789-UTR-F-serratus_M_contig65:416038..4160861690964098.9745789-UTR-F-serratus_M_contig65:416038..416086Fucus serratus maleUTRF-serratus_M_contig65 416039..416086 -
1622932006.3483622-UTR-F-serratus_M_contig65:416329..4163831622932006.3483622-UTR-F-serratus_M_contig65:416329..416383Fucus serratus maleUTRF-serratus_M_contig65 416330..416383 -
1690964098.9857275-UTR-F-serratus_M_contig65:416329..4163831690964098.9857275-UTR-F-serratus_M_contig65:416329..416383Fucus serratus maleUTRF-serratus_M_contig65 416330..416383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932005.9868457-CDS-F-serratus_M_contig65:413181..4133311622932005.9868457-CDS-F-serratus_M_contig65:413181..413331Fucus serratus maleCDSF-serratus_M_contig65 413182..413331 -
1690964098.8898644-CDS-F-serratus_M_contig65:413181..4133311690964098.8898644-CDS-F-serratus_M_contig65:413181..413331Fucus serratus maleCDSF-serratus_M_contig65 413182..413331 -
1622932006.0028849-CDS-F-serratus_M_contig65:413670..4138021622932006.0028849-CDS-F-serratus_M_contig65:413670..413802Fucus serratus maleCDSF-serratus_M_contig65 413671..413802 -
1690964098.8977385-CDS-F-serratus_M_contig65:413670..4138021690964098.8977385-CDS-F-serratus_M_contig65:413670..413802Fucus serratus maleCDSF-serratus_M_contig65 413671..413802 -
1622932006.0185184-CDS-F-serratus_M_contig65:413978..4140431622932006.0185184-CDS-F-serratus_M_contig65:413978..414043Fucus serratus maleCDSF-serratus_M_contig65 413979..414043 -
1690964098.905646-CDS-F-serratus_M_contig65:413978..4140431690964098.905646-CDS-F-serratus_M_contig65:413978..414043Fucus serratus maleCDSF-serratus_M_contig65 413979..414043 -
1622932006.034951-CDS-F-serratus_M_contig65:414617..4147271622932006.034951-CDS-F-serratus_M_contig65:414617..414727Fucus serratus maleCDSF-serratus_M_contig65 414618..414727 -
1690964098.913546-CDS-F-serratus_M_contig65:414617..4147271690964098.913546-CDS-F-serratus_M_contig65:414617..414727Fucus serratus maleCDSF-serratus_M_contig65 414618..414727 -
1622932006.049661-CDS-F-serratus_M_contig65:415064..4151651622932006.049661-CDS-F-serratus_M_contig65:415064..415165Fucus serratus maleCDSF-serratus_M_contig65 415065..415165 -
1690964098.931242-CDS-F-serratus_M_contig65:415064..4151651690964098.931242-CDS-F-serratus_M_contig65:415064..415165Fucus serratus maleCDSF-serratus_M_contig65 415065..415165 -
1622932006.0721846-CDS-F-serratus_M_contig65:415479..4155181622932006.0721846-CDS-F-serratus_M_contig65:415479..415518Fucus serratus maleCDSF-serratus_M_contig65 415480..415518 -
1690964098.9442363-CDS-F-serratus_M_contig65:415479..4155181690964098.9442363-CDS-F-serratus_M_contig65:415479..415518Fucus serratus maleCDSF-serratus_M_contig65 415480..415518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17471.1

>prot_F-serratus_M_contig65.17471.1 ID=prot_F-serratus_M_contig65.17471.1|Name=mRNA_F-serratus_M_contig65.17471.1|organism=Fucus serratus male|type=polypeptide|length=199bp
MKCRVFNVNNNRLAGLPHCLKDMPRLTVLSAVNNVLRSLPSDIGDSKSIT
ALHLAANRLNQLPDNIYRLKTLRVLWLDHNFITGLPMKFHKLTNLDRLFM
EQNDMVYPPSEIVREGCECVRRWCLRRLHDRVQARQHTIVVAVQDILRQI
ATRGLGSPTFFEPDVHIGDNKEDLHYALIYERFWDTMLPALERVRAQR*
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mRNA from alignment at F-serratus_M_contig65:413143..416383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17471.1 ID=mRNA_F-serratus_M_contig65.17471.1|Name=mRNA_F-serratus_M_contig65.17471.1|organism=Fucus serratus male|type=mRNA|length=3241bp|location=Sequence derived from alignment at F-serratus_M_contig65:413143..416383- (Fucus serratus male)
GAATCTGACGCATCTCAATCTGGTCAGAAACAGGCTCGTTACTTTGCCAG
ACAGGTGCGAATAAGTGCATCCCATTTTGTCGCTTTGTCTGGTCTTTGAT
GAACGAACGTGACTAAGCCCGAGATTGTTGTTTCCTGTAGGTCAGGCGTG
TGGCTTCGACGAAAAGGAACGTCATTAGTTGGACGGCGAGACAATGTGAC
CAGCAACAGAAACGCGCAGCTGGTAAATTATAAAAACTCTTACAGGCTGT
TCCTATTCGCAACCCTGCATCTCTCTTACTTTGGTCTCCACCCCCAGATT
CGGCAGCTTACTACGGCTGCGACACTTGTCGTTAGCCAGTAACAGGCAAG
TCGAGACTTACTCTATCCGCGGCCAGCTGTGTCCGGAGTTCACAGAGGAC
ACAGCTGAGGTTTATAAAATACACGAAACAAATCAACCCTCCTTTCGCGT
CCTCCGAAAAGGCTTTTTGTGGCGGTCGGGCGTTATGATGGCGGTGCGTT
TTTCCCTCGTTAGGTTGTTTGAGCAACCGACCCCAACAGGACGTACTGGC
AGCGTTGGACACCGATATTGCCTTATTCTGAAGTTTTCTTAATGATCCCG
TCCAGCGCCGTCGCGCTTTCACGGTGATCGAACGATAGACAGCGAGCACA
GCGCGCCCTCGGAACACGAACGAATTCGGTGTACACAGAGAGTTATTTGT
GGATTATTTGATAATAATGCATTTTCACCTTGCCCCTTCCTCTGTCTTCG
ATCTCCACTCGTCAGACTCGAGACGATTCCACTCTCGTTCGGGAATCTTG
TACGTCTCGATCGAGTGAACCTAGACTGTAACTGCCTTTGCAAGCTTCCG
GAATCGCTTGGCAGCATGAAATGTCGCGTCTTCAACGTGAACAACAACAG
ACTAGTGAGAGTAATAATTATGGCTCCAACACGCGCAGAGACATGCTCCG
CGGTAGTTCGCGTATATGCGCATCTTGAGGTTCGGGTGGTGATGTCTTGA
AGGAGGCGTTATGGTTGTGATAAAAATAGTTTATATTCCAGTGTGCGATG
TTAGAGACTGTCCTTATGGCCCGTTGCGGTTTCTATATTTTTGGTAAAAA
ACGGTACCTGTTTTAAAACCCAAACTTCATTCGTTCCAGAATTCCAACGC
CCTGTAAAAAAATGATAAAACGTTGTCACTCGTAAGCGTTTTCCTGTACC
GAATCTCAATCGATCCAGGCGGGTCTGCCTCACTGCCTCAAGGACATGCC
ACGCCTTACCGTACTGTCGGCTGTCAACAACGTTTTGCGGTCGCTACCGT
CGGACATAGGTGATTCGAAGTAAGTGGTGATTATTACCTTCCCAGACGAA
ACGTGTCCTCCCTTTGGTGATGCGGTTTCACAACGTGGGCAACATTATTT
TCACCGTGGGATCAAAATATATAGGTACTAGACATGTGTTGTTTTGGGAA
TGCCAAGGGGAATTACCCGACAGTGCCCATAATCATGACATGGAATCATG
ATCTTTGAATTAATGTTTAGTCAAACGTACTGCCGCTGTTCGGCTACTAT
AGGGCGTAACTTCTGGGTGGAAAAGAGACGCGTTTTAACATTTGCAGCAA
TCTCCCGCATCCCAAGGGAGGGGGTGGGTCATTTTGCGCGGTTGATTGTG
AAACAGGTCGATCACAGCGCTGCATCTGGCTGCCAACCGACTCAACCAAC
TACCCGACAACATCTACCGCCTAAAAACGCTCAGGGTCTTGTGGCTCGAC
CATAACTTTATCACAGGTCAAGTGCACTGTGACGGCGCCACTTCGTTGGC
GTCGCGGGAAGTCATTAACGGTTCGCATTTAATGTTGTTTCCGACGTTAG
CGCTCTAAGCACTGAATGTCCATGACTTTCAAAGTAGGCCTCCTCTCAAG
GCTGCTCAATACTTCTGAGAGTCGTTCAAAGAATGGAAGAGGGGGGATTC
GATAATCCCGTCCCGAGGGATGTCATCAAAACAGTCCCTCCCAGGGATGG
AACTGCAGGCAAGCTTGCCCCGAACTCAACTTGTCTCACCAGGGGTTTGA
TCAAATGTATAACCGGGAGGGGCCACTTTTGTGCTATCCCCCCCTTAACT
GGGAGACAAATTTAGGATACCCCCCCCCCCCGTCCCCTCATTCATTGAAT
ATCTCTTCTTGAGGTCTCCACTGAAGCCGGACTTTGAACTCCCAAAGCAC
CCGAAGATCGAACAAGCTATCGTTCGATGATCGCCGTCCTTTTTAGTACC
GGCGAGCAGAGTCGCACAAATAAAGACCCGGCGCGTGATGTGTTGGCCTA
AGTTTTCTGCTACGTTTTGCCTGTGCGACGTACTCATCAGGCTTGCCGAT
GAAATTCCATAAGCTGACAAACTTGGACAGACTTTTCATGGAGCAAAATG
ATATGGTGCGTGTTTTTATCTGATCGGTGTAATGTGAGAAAGGATTTCCA
GCCTGCGCGACCCTCTGATCGTGGCGTAGACGTGACCGAAACTCCGAACA
GGTTACTGCTTGGTTGAGTAATACTTCGACAATTGATTTGCATACACACA
TGGATAGCTTTGGCCGATTTCGTCATTACAGGTGTATCCCCCGTCGGAAA
TTGTAAGAGAAGGCTGCGAGTGCGTCCGACGCTGGTGTTTGCGTCGATTG
CACGATCGCGTGCAAGCGAGGCAGCACACTATTGTCGTGGCGGTCCAGGA
TATCCTCCGCCAAGTACGTCGCGCCTTGATCCTCTTGTCCCATAATGAAC
TCGGAGGGGCCCATCATAATGACGGTTAGGGCGGGTTCCCATCCCAGTAC
CCTACAAGACGTCTGTCGTCCATGAGTAAGGATAGGTCCTCGCACATTTC
TCGGTGTATCATCTCGATATGCCATCAGAATGTGTAAACACTTGAGGGGG
TATCTATCTAAAACCAATAACAAAACTTTCGAGTGTGCTACTGAAAGGTG
TACCCACCAAACCGAGGTCTCAGGGTAAGCGGCATCTTTTGAACGGACAC
AAAACTGACCACCAACTGCCGTTCTTCCGTTGATTTCATCCGGCATCATA
AGATTGCGACACGCGGTCTGGGTAGTCCCACCTTCTTCGAGCCGGACGTC
CACATAGGGGACAACAAAGAAGATCTTCACTACGCCTTGATCTATGAGAG
ATTCTGGGACACCATGCTCCCGGCCCTCGAACGCGTACGTGCACAACGTT
AAAACTTTGCATCAAACTCAAAGGCCGCTTTAAGGGTTAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:413143..416383-

>mRNA_F-serratus_M_contig65.17471.1 ID=mRNA_F-serratus_M_contig65.17471.1|Name=mRNA_F-serratus_M_contig65.17471.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig65:413143..416383- (Fucus serratus male)
ATGAAATGTCGCGTCTTCAACGTGAACAACAACAGACTAATGAAATGTCG
CGTCTTCAACGTGAACAACAACAGACTAGCGGGTCTGCCTCACTGCCTCA
AGGACATGCCACGCCTTACCGTACTGTCGGCTGTCAACAACGTTTTGCGG
TCGCTACCGTCGGACATAGGTGATTCGAAGCGGGTCTGCCTCACTGCCTC
AAGGACATGCCACGCCTTACCGTACTGTCGGCTGTCAACAACGTTTTGCG
GTCGCTACCGTCGGACATAGGTGATTCGAAGTCGATCACAGCGCTGCATC
TGGCTGCCAACCGACTCAACCAACTACCCGACAACATCTACCGCCTAAAA
ACGCTCAGGGTCTTGTGGCTCGACCATAACTTTATCACAGGTCGATCACA
GCGCTGCATCTGGCTGCCAACCGACTCAACCAACTACCCGACAACATCTA
CCGCCTAAAAACGCTCAGGGTCTTGTGGCTCGACCATAACTTTATCACAG
GCTTGCCGATGAAATTCCATAAGCTGACAAACTTGGACAGACTTTTCATG
GAGCAAAATGATATGGCTTGCCGATGAAATTCCATAAGCTGACAAACTTG
GACAGACTTTTCATGGAGCAAAATGATATGGTGTATCCCCCGTCGGAAAT
TGTAAGAGAAGGCTGCGAGTGCGTCCGACGCTGGTGTTTGCGTCGATTGC
ACGATCGCGTGCAAGCGAGGCAGCACACTATTGTCGTGGCGGTCCAGGAT
ATCCTCCGCCAAGTGTATCCCCCGTCGGAAATTGTAAGAGAAGGCTGCGA
GTGCGTCCGACGCTGGTGTTTGCGTCGATTGCACGATCGCGTGCAAGCGA
GGCAGCACACTATTGTCGTGGCGGTCCAGGATATCCTCCGCCAAATTGCG
ACACGCGGTCTGGGTAGTCCCACCTTCTTCGAGCCGGACGTCCACATAGG
GGACAACAAAGAAGATCTTCACTACGCCTTGATCTATGAGAGATTCTGGG
ACACCATGCTCCCGGCCCTCGAACGCGTACGTGCACAACGTTAAATTGCG
ACACGCGGTCTGGGTAGTCCCACCTTCTTCGAGCCGGACGTCCACATAGG
GGACAACAAAGAAGATCTTCACTACGCCTTGATCTATGAGAGATTCTGGG
ACACCATGCTCCCGGCCCTCGAACGCGTACGTGCACAACGTTAA
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