mRNA_F-serratus_M_contig65.17468.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig65.17468.1
Unique NamemRNA_F-serratus_M_contig65.17468.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig65.17468.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 5.880e-20
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    4 SAEFSPRLAHREVKRRKLDALLQVLTAPSRAHLNSSHQVLVRAVLGMESSADRAFRSYNPTMTSEEARAYPTADDAGSRVEGG 252
            S E+SPRL+ +EVKRRK+DA+LQ+LTAPSRAH N +HQV+VRAVLGMESSADRA+RSYNP      A A  TA  A S  +GG
Sbjct: 1099 SMEYSPRLSRQEVKRRKMDAVLQLLTAPSRAHANRAHQVVVRAVLGMESSADRAYRSYNPV-----AAATATAP-AASSADGG 1175
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig65.17468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMK0_ECTSI5.880e-2066.27DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig65contigF-serratus_M_contig65:376184..378256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size543
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig65.17468.1prot_F-serratus_M_contig65.17468.1Fucus serratus malepolypeptideF-serratus_M_contig65 376184..378255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932005.2121513-CDS-F-serratus_M_contig65:376183..3763001622932005.2121513-CDS-F-serratus_M_contig65:376183..376300Fucus serratus maleCDSF-serratus_M_contig65 376184..376300 +
1690964098.4300659-CDS-F-serratus_M_contig65:376183..3763001690964098.4300659-CDS-F-serratus_M_contig65:376183..376300Fucus serratus maleCDSF-serratus_M_contig65 376184..376300 +
1622932005.2281172-CDS-F-serratus_M_contig65:377082..3772801622932005.2281172-CDS-F-serratus_M_contig65:377082..377280Fucus serratus maleCDSF-serratus_M_contig65 377083..377280 +
1690964098.4473643-CDS-F-serratus_M_contig65:377082..3772801690964098.4473643-CDS-F-serratus_M_contig65:377082..377280Fucus serratus maleCDSF-serratus_M_contig65 377083..377280 +
1622932005.2440746-CDS-F-serratus_M_contig65:378030..3782551622932005.2440746-CDS-F-serratus_M_contig65:378030..378255Fucus serratus maleCDSF-serratus_M_contig65 378031..378255 +
1690964098.459151-CDS-F-serratus_M_contig65:378030..3782551690964098.459151-CDS-F-serratus_M_contig65:378030..378255Fucus serratus maleCDSF-serratus_M_contig65 378031..378255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig65.17468.1

>prot_F-serratus_M_contig65.17468.1 ID=prot_F-serratus_M_contig65.17468.1|Name=mRNA_F-serratus_M_contig65.17468.1|organism=Fucus serratus male|type=polypeptide|length=180bp
RSAEFSPRLAHREVKRRKLDALLQVLTAPSRAHLNSSHQVLVRAVLGMES
SADRAFRSYNPTMTSEEARAYPTADDAGSRVEGGSDERASPTPDTEDQKT
LEPKQKRGAGNFTPRVSIDQALSPTGRKVGPFTAPEAVAFIDSPSRDSSD
RSGQGEASKGSAGGGRTLRRPSRRWASKYV
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mRNA from alignment at F-serratus_M_contig65:376184..378256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig65.17468.1 ID=mRNA_F-serratus_M_contig65.17468.1|Name=mRNA_F-serratus_M_contig65.17468.1|organism=Fucus serratus male|type=mRNA|length=2073bp|location=Sequence derived from alignment at F-serratus_M_contig65:376184..378256+ (Fucus serratus male)
AGGTCTGCGGAATTCTCGCCGCGGCTGGCCCATCGGGAGGTTAAACGTCG
CAAGCTTGACGCCCTGTTGCAGGTCTTGACGGCCCCGTCTCGCGCGCACC
TCAACAGCTCTCATCAGGTGTGAGGCGAGGCAACGGCTTACAGGATCGAA
GAAACGCATTAGGATATTTTTAAACTAGGGAAGGTTGGGGGTTGAGGGGC
GGATGATACCGTGTACCATAGGGGTAGATATATACATGGAAGGAAGGTTC
TTTGACAAACTACAGAAGACAGTAAGAACGCGTGCGTTGCGGACTCAGAA
ACACCTCGCCAAGAGCTTTCTGAAAGCTGTATCATCTTGTAGGACATATG
AAGTAGCTTGCGAAGTCCGTGCCGCACTAGCCCCCTGGGGAGATTTGTAG
TCCCAACGTCGAACGCCTCCATACCAAACTATAGTACTGTCTTGTCTCTT
GAGCCGGTGGTGTGTAAAGCTCTTGATTTACATCCGCTGTGGAGAGTAAG
AGCGTGCATCCTTTCTATGGGAGCACTGGTAGCATCTGTTGCGTGGCCTG
TTTCGCTTATTATACTTGAACGTAATGCAAATTACCACTTAAGCACGTTT
TCGGATGTTGATGTCCTGAGGTCACCTTGCTCCCGTGACGTCACTCGTCT
TCAAAGCATCAACGTAAACTGCAGGTTCCGTTCGGTTCTGTTCGGTTCCG
TTCAGTTCGATTCCGTTCGTCGTTCGGTTCCGTTCGTCGTTCGGTTCCGT
TCGTCGTTCGGATTAGTTCGTCGACTTTTTCATGTCGATCCATTTTCAGC
CCGCTCCCGTACATTTTCAGCCCGCTTCGATTTTCACACGATTTTCCTCC
TTCGGTTTCGTTTTGTTCTGTTCCGCTCCGTTATATCGCCGCTCGACAGG
TTCTAGTGAGGGCGGTGCTCGGTATGGAGAGCTCCGCCGATCGCGCCTTC
CGGTCGTACAACCCCACAATGACCTCGGAGGAAGCAAGGGCGTATCCTAC
GGCTGACGACGCTGGCTCGAGAGTCGAGGGTGGCAGCGACGAAAGGGCGT
CGCCGACGCCCGACACGGAGGACCAAAAGACTCTGGAGCCGAAGCAGGCG
AGCAAATTTCTGGGTATTTACTACCAGTACTATTAATAATAATACGGAGG
TGTCGGATTGACTTGTCCACAATTTACAGTTCTGGAGCCCATCTCTTTTT
CGCCCATGTTATGTTATCTTTTGGAGTCCATTTATACGTACGGTACAGTA
GGACCTGGCCGAAAGTACCAGTATTCGTTTTTCTTGTCTCAAGCGATCTT
TCTGGATCTTTCTGGAGCTTCCTCTTGGCCCTGTACTACCGCGATGTTGT
ACTGGTACTCTGGAGTATTGTTTTTGTCGAATGCACGATAATATTCCACA
GTTGCCGAGGCTCATAGCCTCTTTTGCTCCATCCTTAATCGAATGAGTAG
TAGGAAGCATTTTTTTTTTTTTTTTGTTTGTTGTTGTTGTTGTTGTTTTT
TGTTGTTGTAAATAAATGTCGGGCAGCGTTGATGTTCTGCTAGATGAACT
GCCATCGACAGCTTTATGACAATCATCGTCCTAGCGGTTGCGACAAGCGC
CATCTACTATCTTTCCCGTGCTTTGAACCGCCGAATCCCATAAATATATA
CCATTTTACATACTCCCCGTACAGGATGACTTATAGTAGCACGTGTAGTA
ACAACCGGCGTCGGTCGTCGCAGTATAGACAATGCCATCTGTTGCGCCCC
CGTCATTTTCCTCCTGTACTGTACGCTGTGTTTGTTTCTCCTTGTGCTTG
CGCCGGTAATGGCAACACTCCCTATCGCGCGCGCTGCGACCTCTCAGAAA
AGGGGTGCTGGAAATTTTACACCCCGGGTTTCCATCGATCAGGCGTTATC
TCCGACGGGGAGGAAGGTGGGACCCTTCACAGCGCCGGAGGCGGTGGCGT
TCATCGACTCTCCCTCGCGTGATTCGAGCGACCGATCTGGTCAGGGCGAG
GCGTCCAAGGGGAGCGCCGGGGGCGGAAGAACCCTCCGACGTCCCTCGCG
TAGATGGGCAAGCAAGTACGTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig65:376184..378256+

>mRNA_F-serratus_M_contig65.17468.1 ID=mRNA_F-serratus_M_contig65.17468.1|Name=mRNA_F-serratus_M_contig65.17468.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig65:376184..378256+ (Fucus serratus male)
AGGTCTGCGGAATTCTCGCCGCGGCTGGCCCATCGGGAGGTTAAACGTCG
CAAGCTTGACGCCCTGTTGCAGGTCTTGACGGCCCCGTCTCGCGCGCACC
TCAACAGCTCTCATCAGAGGTCTGCGGAATTCTCGCCGCGGCTGGCCCAT
CGGGAGGTTAAACGTCGCAAGCTTGACGCCCTGTTGCAGGTCTTGACGGC
CCCGTCTCGCGCGCACCTCAACAGCTCTCATCAGGTTCTAGTGAGGGCGG
TGCTCGGTATGGAGAGCTCCGCCGATCGCGCCTTCCGGTCGTACAACCCC
ACAATGACCTCGGAGGAAGCAAGGGCGTATCCTACGGCTGACGACGCTGG
CTCGAGAGTCGAGGGTGGCAGCGACGAAAGGGCGTCGCCGACGCCCGACA
CGGAGGACCAAAAGACTCTGGAGCCGAAGCAGGTTCTAGTGAGGGCGGTG
CTCGGTATGGAGAGCTCCGCCGATCGCGCCTTCCGGTCGTACAACCCCAC
AATGACCTCGGAGGAAGCAAGGGCGTATCCTACGGCTGACGACGCTGGCT
CGAGAGTCGAGGGTGGCAGCGACGAAAGGGCGTCGCCGACGCCCGACACG
GAGGACCAAAAGACTCTGGAGCCGAAGCAGAAAAGGGGTGCTGGAAATTT
TACACCCCGGGTTTCCATCGATCAGGCGTTATCTCCGACGGGGAGGAAGG
TGGGACCCTTCACAGCGCCGGAGGCGGTGGCGTTCATCGACTCTCCCTCG
CGTGATTCGAGCGACCGATCTGGTCAGGGCGAGGCGTCCAAGGGGAGCGC
CGGGGGCGGAAGAACCCTCCGACGTCCCTCGCGTAGATGGGCAAGCAAGT
ACGTTAAAAGGGGTGCTGGAAATTTTACACCCCGGGTTTCCATCGATCAG
GCGTTATCTCCGACGGGGAGGAAGGTGGGACCCTTCACAGCGCCGGAGGC
GGTGGCGTTCATCGACTCTCCCTCGCGTGATTCGAGCGACCGATCTGGTC
AGGGCGAGGCGTCCAAGGGGAGCGCCGGGGGCGGAAGAACCCTCCGACGT
CCCTCGCGTAGATGGGCAAGCAAGTACGTT
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